Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15535

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
2,943,811	+		LU632_RS15520	0.38	-0.8
2,943,812	-		LU632_RS15520	0.38	-1.1
2,943,864	+		LU632_RS15520	0.54	-0.3
2,943,864	+		LU632_RS15520	0.54	-0.3
2,943,865	-		LU632_RS15520	0.54	-0.5
2,943,969	+		LU632_RS15520	0.85	+3.8
2,943,969	+		LU632_RS15520	0.85	-0.5
2,943,970	-		LU632_RS15520	0.85	+1.1
2,944,046	-				-1.0
2,944,225	+		LU632_RS15525	0.70	+1.0
2,944,396	+		LU632_RS15530	0.18	+0.5
2,944,396	+		LU632_RS15530	0.18	-0.9
2,944,397	-		LU632_RS15530	0.18	+1.9
2,944,397	-		LU632_RS15530	0.18	-0.0
2,944,397	-		LU632_RS15530	0.18	-1.4
2,944,461	+		LU632_RS15530	0.32	+2.4
2,944,513	+		LU632_RS15530	0.44	-0.8
2,944,600	-		LU632_RS15530	0.63	-0.4
2,944,623	+		LU632_RS15530	0.68	+2.6
2,944,623	+		LU632_RS15530	0.68	-0.3
2,944,624	-		LU632_RS15530	0.68	-1.2
2,944,686	-		LU632_RS15530	0.82	-1.5
2,944,802	+				+1.4
2,944,813	+				-1.1
2,944,816	+				-0.2
2,944,816	+				-0.1
2,944,855	+				+0.7
2,944,876	-				+0.8
2,945,151	+		LU632_RS15535	0.34	+0.6
2,945,195	+		LU632_RS15535	0.37	-3.2
2,945,195	+		LU632_RS15535	0.37	+0.2
2,945,195	+		LU632_RS15535	0.37	+2.5
2,945,195	+		LU632_RS15535	0.37	+0.1
2,945,195	+		LU632_RS15535	0.37	+4.4
2,945,196	-		LU632_RS15535	0.38	+1.5
2,945,196	-		LU632_RS15535	0.38	+9.7
2,945,196	-		LU632_RS15535	0.38	+1.6
2,945,196	-		LU632_RS15535	0.38	-0.5
2,945,196	-		LU632_RS15535	0.38	+2.5
2,945,196	-		LU632_RS15535	0.38	-2.2
2,945,263	+		LU632_RS15535	0.43	-2.2
2,945,267	+		LU632_RS15535	0.44	-0.8
2,945,315	-		LU632_RS15535	0.48	-1.3
2,945,315	-		LU632_RS15535	0.48	-0.8
2,945,477	-		LU632_RS15535	0.62	-2.6
2,945,498	-		LU632_RS15535	0.64	+0.5
2,945,541	-		LU632_RS15535	0.68	+0.3
2,945,660	-		LU632_RS15535	0.78	+0.6
2,945,774	-		LU632_RS15535	0.88	+0.2
2,945,887	+				-1.1
2,945,895	-				-2.2
2,945,913	-				-2.8
2,945,926	+				-1.7
2,945,926	+				-3.1
2,945,926	+				-3.3
2,945,926	+				+0.3
2,945,927	-				-1.3
2,945,927	-				-1.8
2,945,968	+				+2.8
2,945,969	-				-3.2
2,945,969	-				-0.7
2,945,969	-				+1.5
2,946,117	+		LU632_RS15540	0.30	+0.2
2,946,118	-		LU632_RS15540	0.30	-1.9
2,946,210	+		LU632_RS15540	0.43	+0.8
2,946,429	+		LU632_RS15540	0.75	-1.8
2,946,430	-		LU632_RS15540	0.75	+1.0
2,946,430	-		LU632_RS15540	0.75	+0.7
2,946,595	-				-2.5
2,946,747	+		LU632_RS15545	0.29	-0.8
2,946,747	+		LU632_RS15545	0.29	-1.7
2,946,747	+		LU632_RS15545	0.29	-1.1
2,946,748	-		LU632_RS15545	0.29	-0.8
2,946,748	-		LU632_RS15545	0.29	+3.6
2,946,844	+		LU632_RS15545	0.48	-2.1
2,946,844	+		LU632_RS15545	0.48	+0.4
2,946,844	+		LU632_RS15545	0.48	-2.9
2,946,844	+		LU632_RS15545	0.48	+1.2
2,946,845	-		LU632_RS15545	0.48	+1.3