Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13930

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
2,669,787	+		LU632_RS13920	0.89	-0.2
2,669,878	+				+0.8
2,669,890	-				+0.9
2,669,950	+				-0.3
2,670,006	+				+0.1
2,670,007	-				-2.7
2,670,091	-				+0.1
2,670,245	+		LU632_RS13925	0.74	+1.2
2,670,245	+		LU632_RS13925	0.74	-0.9
2,670,245	+		LU632_RS13925	0.74	+0.2
2,670,246	-		LU632_RS13925	0.74	-2.3
2,670,246	-		LU632_RS13925	0.74	-0.4
2,670,246	-		LU632_RS13925	0.74	-1.3
2,670,246	-		LU632_RS13925	0.74	+0.1
2,670,248	+		LU632_RS13925	0.75	+1.2
2,670,255	+		LU632_RS13925	0.79	+0.7
2,670,340	+				-1.4
2,670,409	+				-2.1
2,670,418	+				-1.6
2,670,420	+				+0.8
2,670,420	+				-1.2
2,670,420	+				-1.3
2,670,420	+				+0.2
2,670,421	-				-0.4
2,670,421	-				+2.5
2,670,478	+				-0.3
2,670,527	-				-2.1
2,670,565	+				+0.7
2,670,566	-				+0.4
2,670,862	+		LU632_RS13930	0.86	-1.7
2,670,912	+				-1.5
2,670,958	-				-2.3
2,670,960	+				+1.9
2,670,960	+				+4.4
2,670,961	-				+1.8
2,671,017	+				+0.3
2,671,020	+				+0.8
2,671,021	-				-0.7
2,671,106	-		LU632_RS13935	0.23	+1.2
2,671,131	-		LU632_RS13935	0.28	+1.0
2,671,263	-		LU632_RS13935	0.51	+4.5
2,671,364	+		LU632_RS13935	0.69	-1.4
2,671,367	-		LU632_RS13935	0.70	+1.2
2,671,461	+		LU632_RS13935	0.87	+1.2
2,671,462	-		LU632_RS13935	0.87	-0.8