Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12885

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
2,452,623	-	oppA	LU632_RS12880	0.50	-1.7
2,452,624	+	oppA	LU632_RS12880	0.50	-0.4
2,452,787	+	oppA	LU632_RS12880	0.60	-1.7
2,452,787	+	oppA	LU632_RS12880	0.60	+0.4
2,452,788	-	oppA	LU632_RS12880	0.60	-0.6
2,452,842	-	oppA	LU632_RS12880	0.64	-0.5
2,452,856	+	oppA	LU632_RS12880	0.64	+1.1
2,452,857	-	oppA	LU632_RS12880	0.65	-0.6
2,452,858	+	oppA	LU632_RS12880	0.65	+0.5
2,452,859	-	oppA	LU632_RS12880	0.65	+0.8
2,452,859	-	oppA	LU632_RS12880	0.65	-1.2
2,452,934	+	oppA	LU632_RS12880	0.69	-0.1
2,452,934	+	oppA	LU632_RS12880	0.69	+1.7
2,452,934	+	oppA	LU632_RS12880	0.69	+3.6
2,452,934	+	oppA	LU632_RS12880	0.69	-3.1
2,452,934	+	oppA	LU632_RS12880	0.69	+1.1
2,452,935	-	oppA	LU632_RS12880	0.69	-1.0
2,453,149	-	oppA	LU632_RS12880	0.82	+1.6
2,453,249	+	oppA	LU632_RS12880	0.89	-2.6
2,453,249	+	oppA	LU632_RS12880	0.89	-1.9
2,453,250	-	oppA	LU632_RS12880	0.89	-0.6
2,453,250	-	oppA	LU632_RS12880	0.89	+0.4
2,453,395	-				+1.9
2,453,395	-				+1.0
2,453,400	+				+2.1
2,453,401	-				-0.6
2,453,455	-				+2.4
2,453,562	-				-0.3
2,453,620	+				-0.4
2,453,620	+				-0.9
2,453,620	+				-0.9
2,453,621	-				-2.3
2,453,621	-				+0.1
2,453,627	-				-2.0
2,453,686	-				-3.4
2,453,707	+				-1.4
2,453,711	-				-2.0
2,453,718	+				+0.1
2,453,719	-				+1.4
2,453,762	-				-0.4
2,453,762	-				+0.1
2,453,764	+				-0.4
2,453,764	+				-1.9
2,453,764	+				+0.1
2,453,764	+				-0.4
2,453,765	-				-0.8
2,453,765	-				-2.6
2,453,861	+		LU632_RS12885	0.16	+1.0
2,453,862	-		LU632_RS12885	0.16	-1.5
2,453,979	-		LU632_RS12885	0.23	+1.5
2,453,988	+		LU632_RS12885	0.24	-1.4
2,453,989	-		LU632_RS12885	0.24	+0.7
2,453,989	-		LU632_RS12885	0.24	+2.0
2,454,064	+		LU632_RS12885	0.28	-1.2
2,454,064	+		LU632_RS12885	0.28	-1.7
2,454,096	-		LU632_RS12885	0.30	-0.4
2,454,194	+		LU632_RS12885	0.36	-1.3
2,454,222	+		LU632_RS12885	0.38	+0.6
2,454,223	-		LU632_RS12885	0.38	-1.7
2,454,252	-		LU632_RS12885	0.40	+1.3
2,454,327	+		LU632_RS12885	0.45	+0.6
2,454,335	-		LU632_RS12885	0.45	+1.4
2,454,338	-		LU632_RS12885	0.45	+1.1
2,454,338	-		LU632_RS12885	0.45	-1.9
2,454,360	-		LU632_RS12885	0.47	+0.1
2,454,362	+		LU632_RS12885	0.47	+0.2
2,454,362	+		LU632_RS12885	0.47	+2.0
2,454,363	-		LU632_RS12885	0.47	-0.9
2,454,363	-		LU632_RS12885	0.47	-2.3
2,454,363	-		LU632_RS12885	0.47	-3.4
2,454,366	+		LU632_RS12885	0.47	+1.1
2,454,366	+		LU632_RS12885	0.47	-0.2
2,454,367	-		LU632_RS12885	0.47	+2.4
2,454,603	-		LU632_RS12885	0.62	-2.7
2,454,605	-		LU632_RS12885	0.62	-0.6
2,454,674	+		LU632_RS12885	0.66	-0.3
2,454,674	+		LU632_RS12885	0.66	-2.9
2,454,674	+		LU632_RS12885	0.66	-2.7
2,454,675	-		LU632_RS12885	0.66	+0.7
2,454,675	-		LU632_RS12885	0.66	+0.1
2,454,675	-		LU632_RS12885	0.66	-3.2
2,454,689	+		LU632_RS12885	0.67	+0.6
2,454,935	+		LU632_RS12885	0.82	-0.9
2,454,935	+		LU632_RS12885	0.82	+0.2
2,454,935	+		LU632_RS12885	0.82	+0.1
2,455,041	+		LU632_RS12885	0.89	-0.9
2,455,042	-		LU632_RS12885	0.89	+1.7
2,455,042	-		LU632_RS12885	0.89	-0.0
2,455,106	+				-2.6
2,455,140	-				-1.2
2,455,166	+				-1.9
2,455,167	-				-1.7
2,455,169	+				+0.1
2,455,170	-				+0.7
2,455,190	+				-0.4
2,455,190	+				+1.9
2,455,191	-				+1.1
2,455,195	-				+0.8
2,455,236	+				+0.2
2,455,237	-				+0.6
2,455,267	-				-2.4
2,455,267	-				-0.5
2,455,280	-				-0.4
2,455,334	-				-0.3
2,455,387	-				-0.5
2,455,542	-				+0.1
2,455,704	+				+0.0
2,455,855	-				-0.1
2,455,952	-		LU632_RS12890	0.14	+1.9
2,455,952	-		LU632_RS12890	0.14	-0.2
2,455,960	+		LU632_RS12890	0.16	-0.7
2,455,976	+		LU632_RS12890	0.18	-2.2
2,456,048	-		LU632_RS12890	0.29	-1.9
2,456,133	-		LU632_RS12890	0.42	+0.3
2,456,165	+		LU632_RS12890	0.47	-2.7
2,456,166	-		LU632_RS12890	0.47	-2.6