Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12870

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
2,448,908	-				-0.1
2,448,993	-		LU632_RS12865	0.13	+0.3
2,448,993	-		LU632_RS12865	0.13	-1.4
2,449,000	+		LU632_RS12865	0.14	-1.4
2,449,018	+		LU632_RS12865	0.16	-1.3
2,449,019	-		LU632_RS12865	0.16	-1.7
2,449,104	-		LU632_RS12865	0.24	-1.4
2,449,104	-		LU632_RS12865	0.24	-1.4
2,449,136	-		LU632_RS12865	0.28	-0.9
2,449,143	+		LU632_RS12865	0.28	-1.7
2,449,143	+		LU632_RS12865	0.28	+0.8
2,449,143	+		LU632_RS12865	0.28	-0.7
2,449,143	+		LU632_RS12865	0.28	-0.1
2,449,143	+		LU632_RS12865	0.28	-2.2
2,449,143	+		LU632_RS12865	0.28	-0.1
2,449,144	-		LU632_RS12865	0.28	-2.7
2,449,144	-		LU632_RS12865	0.28	-2.0
2,449,202	-		LU632_RS12865	0.34	-1.9
2,449,216	+		LU632_RS12865	0.35	+0.1
2,449,216	+		LU632_RS12865	0.35	-1.2
2,449,228	+		LU632_RS12865	0.37	-0.9
2,449,249	+		LU632_RS12865	0.39	-0.9
2,449,250	-		LU632_RS12865	0.39	-1.2
2,449,268	+		LU632_RS12865	0.41	-2.6
2,449,282	+		LU632_RS12865	0.42	-2.9
2,449,340	+		LU632_RS12865	0.48	-1.4
2,449,490	+		LU632_RS12865	0.62	-2.1
2,449,510	+		LU632_RS12865	0.64	-2.2
2,449,510	+		LU632_RS12865	0.64	-1.1
2,449,615	+		LU632_RS12865	0.75	-2.9
2,449,616	-		LU632_RS12865	0.75	-0.4
2,449,716	-		LU632_RS12865	0.85	-2.0
2,449,784	-				+0.5
2,449,926	-				-1.6
2,449,974	+	oppC	LU632_RS12870	0.10	-1.7
2,449,974	+	oppC	LU632_RS12870	0.10	+1.1
2,449,974	+	oppC	LU632_RS12870	0.10	-2.4
2,450,116	+	oppC	LU632_RS12870	0.26	+1.1
2,450,127	+	oppC	LU632_RS12870	0.27	+0.1
2,450,150	+	oppC	LU632_RS12870	0.30	-2.0
2,450,279	+	oppC	LU632_RS12870	0.44	-0.7
2,450,303	+	oppC	LU632_RS12870	0.46	-0.9
2,450,303	+	oppC	LU632_RS12870	0.46	+0.1
2,450,343	-	oppC	LU632_RS12870	0.51	+0.0
2,450,511	+	oppC	LU632_RS12870	0.69	-1.1
2,450,511	+	oppC	LU632_RS12870	0.69	-0.9
2,450,599	+	oppC	LU632_RS12870	0.79	-0.6
2,450,603	+	oppC	LU632_RS12870	0.79	-1.4
2,450,604	-	oppC	LU632_RS12870	0.80	+0.7
2,450,684	+	oppC	LU632_RS12870	0.88	-1.9
2,450,688	+	oppC	LU632_RS12870	0.89	+0.9
2,450,689	-	oppC	LU632_RS12870	0.89	+2.1
2,450,689	-	oppC	LU632_RS12870	0.89	-0.4
2,450,689	-	oppC	LU632_RS12870	0.89	+1.1
2,450,689	-	oppC	LU632_RS12870	0.89	-2.3
2,450,938	+	oppB	LU632_RS12875	0.15	+1.5
2,450,939	-	oppB	LU632_RS12875	0.15	+1.1
2,450,977	+	oppB	LU632_RS12875	0.19	+0.7
2,451,020	+	oppB	LU632_RS12875	0.24	+0.1
2,451,125	-	oppB	LU632_RS12875	0.35	+0.5
2,451,170	+	oppB	LU632_RS12875	0.40	+3.5
2,451,171	-	oppB	LU632_RS12875	0.40	-3.6
2,451,348	+	oppB	LU632_RS12875	0.59	-0.5
2,451,349	-	oppB	LU632_RS12875	0.59	+0.6
2,451,349	-	oppB	LU632_RS12875	0.59	-1.9
2,451,349	-	oppB	LU632_RS12875	0.59	+1.1
2,451,349	-	oppB	LU632_RS12875	0.59	-2.7
2,451,349	-	oppB	LU632_RS12875	0.59	+1.7
2,451,349	-	oppB	LU632_RS12875	0.59	-2.0
2,451,392	-	oppB	LU632_RS12875	0.64	+0.2
2,451,455	-	oppB	LU632_RS12875	0.71	+0.9
2,451,481	-	oppB	LU632_RS12875	0.74	+0.0
2,451,482	+	oppB	LU632_RS12875	0.74	-0.9
2,451,482	+	oppB	LU632_RS12875	0.74	-0.9
2,451,521	-	oppB	LU632_RS12875	0.78	+2.1
2,451,521	-	oppB	LU632_RS12875	0.78	+1.1
2,451,527	+	oppB	LU632_RS12875	0.79	+1.3
2,451,559	-	oppB	LU632_RS12875	0.82	-2.2
2,451,559	-	oppB	LU632_RS12875	0.82	+0.6
2,451,567	-	oppB	LU632_RS12875	0.83	-3.8
2,451,618	+	oppB	LU632_RS12875	0.88	+1.1
2,451,660	+				-0.4
2,451,660	+				+0.1
2,451,661	-				-0.1
2,451,664	-				-3.0
2,451,707	-				-0.2