Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11755

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
2,233,795	+		LU632_RS11745	0.79	+1.2
2,233,795	+		LU632_RS11745	0.79	-2.5
2,233,809	-		LU632_RS11745	0.81	+1.7
2,233,879	+				-0.4
2,233,879	+				-0.1
2,233,898	+				+0.4
2,233,925	-				+1.6
2,233,952	-				+0.1
2,233,999	+				-0.8
2,234,027	+				-1.9
2,234,028	-				-0.8
2,234,028	-				-2.8
2,234,031	+				-0.9
2,234,031	+				+1.1
2,234,031	+				+0.6
2,234,033	+				-0.8
2,234,033	+				-0.4
2,234,033	+				+0.2
2,234,033	+				-2.0
2,234,105	+				+0.0
2,234,120	+				+1.2
2,234,121	-				-2.3
2,234,121	-				+0.2
2,234,121	-				+0.7
2,234,170	-				+0.7
2,234,195	+				-0.4
2,234,303	+		LU632_RS11750	0.40	-0.2
2,234,403	-		LU632_RS11750	0.68	-0.4
2,234,414	+		LU632_RS11750	0.71	-1.4
2,234,504	+				-0.8
2,234,569	-				+0.2
2,234,649	-				-2.9
2,234,801	+		LU632_RS11755	0.40	-0.9
2,234,864	+		LU632_RS11755	0.81	-1.8
2,234,864	+		LU632_RS11755	0.81	-0.7
2,234,865	-		LU632_RS11755	0.82	-1.2
2,234,911	-				+0.5
2,234,916	+				+1.2
2,234,932	+				-0.4
2,234,986	-				+1.2
2,235,094	+		LU632_RS11760	0.25	+0.6
2,235,094	+		LU632_RS11760	0.25	-0.0
2,235,119	-		LU632_RS11760	0.29	-0.4
2,235,270	+		LU632_RS11760	0.55	-0.4
2,235,271	-		LU632_RS11760	0.55	-1.2
2,235,273	+		LU632_RS11760	0.56	-1.9
2,235,273	+		LU632_RS11760	0.56	+0.0
2,235,273	+		LU632_RS11760	0.56	-0.3
2,235,274	-		LU632_RS11760	0.56	+0.2
2,235,274	-		LU632_RS11760	0.56	+0.6
2,235,274	-		LU632_RS11760	0.56	+0.5
2,235,296	+		LU632_RS11760	0.60	-1.2
2,235,432	+		LU632_RS11760	0.84	-1.9
2,235,432	+		LU632_RS11760	0.84	-0.9
2,235,433	-		LU632_RS11760	0.84	+0.9
2,235,434	+		LU632_RS11760	0.84	+3.0
2,235,435	-		LU632_RS11760	0.84	+2.4
2,235,435	-		LU632_RS11760	0.84	+0.1
2,235,435	-		LU632_RS11760	0.84	-2.7
2,235,435	-		LU632_RS11760	0.84	+0.9
2,235,476	-				-0.9
2,235,540	-				-1.2
2,235,593	+		LU632_RS11765	0.11	-1.7
2,235,629	+		LU632_RS11765	0.16	-1.7
2,235,630	-		LU632_RS11765	0.17	+1.7
2,235,636	-		LU632_RS11765	0.17	+1.1
2,235,636	-		LU632_RS11765	0.17	-0.1
2,235,656	+		LU632_RS11765	0.21	+1.1
2,235,657	-		LU632_RS11765	0.21	-0.9
2,235,657	-		LU632_RS11765	0.21	-1.9
2,235,657	-		LU632_RS11765	0.21	-0.1
2,235,703	+		LU632_RS11765	0.28	-0.2
2,235,704	-		LU632_RS11765	0.28	+1.4
2,235,704	-		LU632_RS11765	0.28	-0.0
2,235,747	-		LU632_RS11765	0.34	-2.3
2,235,835	-		LU632_RS11765	0.48	-2.0
2,235,835	-		LU632_RS11765	0.48	+0.9
2,235,886	+		LU632_RS11765	0.56	-1.5
2,235,887	-		LU632_RS11765	0.56	-0.4