Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11520

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
2,196,227	-				+0.3
2,196,228	+				-0.5
2,196,229	-				-2.1
2,196,260	-				-1.5
2,196,310	-				+2.8
2,196,358	+				-1.2
2,196,363	+				-0.0
2,196,378	+				+0.1
2,196,378	+				-2.2
2,196,379	-				+0.1
2,196,379	-				-0.5
2,196,379	-				+0.4
2,196,379	-				+1.1
2,196,824	-	mpaA	LU632_RS11515	0.46	+1.3
2,196,824	-	mpaA	LU632_RS11515	0.46	+3.5
2,196,828	+	mpaA	LU632_RS11515	0.46	+1.5
2,196,828	-	mpaA	LU632_RS11515	0.46	-2.3
2,197,048	-	mpaA	LU632_RS11515	0.77	-2.0
2,197,128	+	mpaA	LU632_RS11515	0.88	-2.3
2,197,305	-		LU632_RS11520	0.29	-2.0
2,197,343	-		LU632_RS11520	0.38	-2.9
2,197,343	-		LU632_RS11520	0.38	-0.9
2,197,350	-		LU632_RS11520	0.40	-0.9
2,197,350	-		LU632_RS11520	0.40	-1.5
2,197,355	+		LU632_RS11520	0.41	-0.2
2,197,356	-		LU632_RS11520	0.41	-1.5
2,197,356	-		LU632_RS11520	0.41	-1.7
2,197,431	+		LU632_RS11520	0.60	-1.0
2,197,432	-		LU632_RS11520	0.60	-2.8
2,197,572	+				-0.5
2,197,602	+				+1.4
2,197,602	+				-0.1
2,197,602	+				-0.7
2,197,602	+				+0.2
2,197,603	-				-2.3
2,197,603	-				-0.9
2,197,639	+		LU632_RS11525	0.38	+0.4
2,197,639	+		LU632_RS11525	0.38	+0.3
2,197,645	-		LU632_RS11525	0.43	-1.0
2,197,684	-		LU632_RS11525	0.76	-1.5
2,197,763	+				+4.1
2,197,764	-				+0.9
2,197,834	-				+1.1
2,197,886	+				+1.2
2,197,886	+				+0.1
2,198,057	-	tyrR	LU632_RS11530	0.19	+0.1
2,198,082	+	tyrR	LU632_RS11530	0.20	+2.3
2,198,085	-	tyrR	LU632_RS11530	0.21	-1.2
2,198,181	+	tyrR	LU632_RS11530	0.27	+2.5
2,198,182	-	tyrR	LU632_RS11530	0.27	+0.5
2,198,227	+	tyrR	LU632_RS11530	0.30	-0.5
2,198,227	+	tyrR	LU632_RS11530	0.30	+1.0
2,198,227	+	tyrR	LU632_RS11530	0.30	+2.7
2,198,227	+	tyrR	LU632_RS11530	0.30	+1.6
2,198,227	+	tyrR	LU632_RS11530	0.30	+0.5
2,198,228	-	tyrR	LU632_RS11530	0.30	-0.0
2,198,228	-	tyrR	LU632_RS11530	0.30	-1.9
2,198,551	+	tyrR	LU632_RS11530	0.50	-1.7