Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11505

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
2,194,075	+				+1.1
2,194,114	-				-1.0
2,194,144	+				-1.4
2,194,146	+				+1.1
2,194,146	+				-0.4
2,194,146	+				-1.8
2,194,147	-				+1.5
2,194,269	+		LU632_RS11505	0.29	-2.6
2,194,269	+		LU632_RS11505	0.29	-3.3
2,194,465	+		LU632_RS11505	0.88	-0.9
2,194,466	-		LU632_RS11505	0.88	-0.1
2,194,483	-				+2.1
2,194,504	-				-0.9
2,194,640	+				-2.2
2,194,666	-				-0.7
2,194,786	-		LU632_RS11510	0.11	-0.9
2,194,786	-		LU632_RS11510	0.11	+0.4
2,194,788	+		LU632_RS11510	0.11	+1.3
2,194,890	+		LU632_RS11510	0.17	-2.0
2,194,903	-		LU632_RS11510	0.18	-1.5
2,194,905	-		LU632_RS11510	0.18	+1.1
2,194,905	-		LU632_RS11510	0.18	-1.8
2,194,930	+		LU632_RS11510	0.20	-0.9
2,194,930	+		LU632_RS11510	0.20	-2.9
2,194,930	+		LU632_RS11510	0.20	-3.0
2,194,931	-		LU632_RS11510	0.20	+1.8
2,195,068	-		LU632_RS11510	0.28	-0.5
2,195,069	+		LU632_RS11510	0.29	-1.2
2,195,139	+		LU632_RS11510	0.33	-0.0
2,195,140	-		LU632_RS11510	0.33	-1.5
2,195,296	+		LU632_RS11510	0.43	-2.0
2,195,303	-		LU632_RS11510	0.43	-0.1
2,195,303	-		LU632_RS11510	0.43	-0.5
2,195,329	-		LU632_RS11510	0.45	+1.0
2,195,342	+		LU632_RS11510	0.45	+0.1
2,195,342	+		LU632_RS11510	0.45	-0.6
2,195,345	+		LU632_RS11510	0.46	+0.3
2,195,345	+		LU632_RS11510	0.46	-0.5
2,195,346	-		LU632_RS11510	0.46	+0.6
2,195,346	-		LU632_RS11510	0.46	-0.6
2,195,369	+		LU632_RS11510	0.47	+0.7
2,195,369	+		LU632_RS11510	0.47	+1.3
2,195,369	+		LU632_RS11510	0.47	-0.5
2,195,405	+		LU632_RS11510	0.49	-1.2
2,195,405	+		LU632_RS11510	0.49	+1.0