Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08770 and LU632_RS08775 are separated by 15 nucleotides LU632_RS08775 and wzc are separated by 12 nucleotides wzc and LU632_RS08785 are separated by 104 nucleotides
LU632_RS08770: LU632_RS08770 - polysaccharide export protein, at 1,648,511 to 1,649,644
_RS08770
LU632_RS08775: LU632_RS08775 - protein tyrosine phosphatase, at 1,649,660 to 1,650,094
_RS08775
LU632_RS08780: wzc - tyrosine-protein kinase Wzc, at 1,650,107 to 1,652,290
wzc
LU632_RS08785: LU632_RS08785 - glycosyltransferase family 2 protein, at 1,652,395 to 1,653,300
_RS08785
Position (kb) 1650
1651
1652
1653 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1649.234 kb on + strand, within LU632_RS08770 at 1649.453 kb on - strand, within LU632_RS08770 at 1649.456 kb on + strand, within LU632_RS08770 at 1649.603 kb on + strand at 1649.603 kb on + strand at 1649.665 kb on + strand at 1649.695 kb on + strand at 1649.695 kb on + strand at 1649.769 kb on + strand, within LU632_RS08775 at 1649.770 kb on - strand, within LU632_RS08775 at 1649.771 kb on + strand, within LU632_RS08775 at 1649.771 kb on + strand, within LU632_RS08775 at 1649.772 kb on - strand, within LU632_RS08775 at 1649.851 kb on - strand, within LU632_RS08775 at 1649.967 kb on + strand, within LU632_RS08775 at 1649.968 kb on + strand, within LU632_RS08775 at 1649.983 kb on + strand, within LU632_RS08775 at 1650.042 kb on - strand, within LU632_RS08775 at 1650.048 kb on + strand, within LU632_RS08775 at 1650.049 kb on - strand, within LU632_RS08775 at 1650.085 kb on - strand at 1650.112 kb on + strand at 1650.113 kb on - strand at 1650.113 kb on - strand at 1650.121 kb on + strand at 1650.225 kb on + strand at 1650.226 kb on - strand at 1650.226 kb on - strand at 1650.229 kb on + strand at 1650.229 kb on + strand at 1650.230 kb on - strand at 1650.230 kb on - strand at 1650.248 kb on + strand at 1650.249 kb on - strand at 1650.249 kb on - strand at 1650.249 kb on - strand at 1650.516 kb on + strand, within wzc at 1650.517 kb on - strand, within wzc at 1650.517 kb on - strand, within wzc at 1650.622 kb on + strand, within wzc at 1650.739 kb on + strand, within wzc at 1650.776 kb on - strand, within wzc at 1650.809 kb on + strand, within wzc at 1650.866 kb on + strand, within wzc at 1650.866 kb on + strand, within wzc at 1650.867 kb on - strand, within wzc at 1650.867 kb on - strand, within wzc at 1650.867 kb on - strand, within wzc at 1650.974 kb on - strand, within wzc at 1650.982 kb on + strand, within wzc at 1651.012 kb on + strand, within wzc at 1651.013 kb on - strand, within wzc at 1651.013 kb on - strand, within wzc at 1651.013 kb on - strand, within wzc at 1651.013 kb on - strand, within wzc at 1651.052 kb on - strand, within wzc at 1651.056 kb on + strand, within wzc at 1651.057 kb on - strand, within wzc at 1651.127 kb on - strand, within wzc at 1651.156 kb on + strand, within wzc at 1651.246 kb on - strand, within wzc at 1651.265 kb on + strand, within wzc at 1651.265 kb on + strand, within wzc at 1651.265 kb on + strand, within wzc at 1651.265 kb on + strand, within wzc at 1651.266 kb on - strand, within wzc at 1651.267 kb on + strand, within wzc at 1651.509 kb on - strand, within wzc at 1651.540 kb on + strand, within wzc at 1651.691 kb on - strand, within wzc at 1651.700 kb on - strand, within wzc at 1651.711 kb on + strand, within wzc at 1651.745 kb on - strand, within wzc at 1651.798 kb on - strand, within wzc at 1651.840 kb on - strand, within wzc at 1651.850 kb on - strand, within wzc at 1651.850 kb on - strand, within wzc at 1651.894 kb on - strand, within wzc at 1651.894 kb on - strand, within wzc at 1651.894 kb on - strand, within wzc at 1651.903 kb on + strand, within wzc at 1652.001 kb on + strand, within wzc at 1652.002 kb on - strand, within wzc at 1652.002 kb on - strand, within wzc at 1652.018 kb on - strand, within wzc at 1652.024 kb on + strand, within wzc at 1652.034 kb on + strand, within wzc at 1652.240 kb on + strand at 1652.241 kb on - strand at 1652.262 kb on - strand at 1652.288 kb on + strand at 1652.403 kb on + strand at 1652.431 kb on + strand at 1652.432 kb on - strand at 1652.518 kb on - strand, within LU632_RS08785 at 1652.632 kb on - strand, within LU632_RS08785 at 1652.660 kb on - strand, within LU632_RS08785 at 1652.728 kb on - strand, within LU632_RS08785 at 1652.768 kb on - strand, within LU632_RS08785 at 1652.782 kb on - strand, within LU632_RS08785 at 1652.784 kb on + strand, within LU632_RS08785 at 1652.855 kb on - strand, within LU632_RS08785 at 1652.897 kb on + strand, within LU632_RS08785 at 1653.028 kb on + strand, within LU632_RS08785 at 1653.028 kb on + strand, within LU632_RS08785 at 1653.037 kb on - strand, within LU632_RS08785 at 1653.103 kb on - strand, within LU632_RS08785 at 1653.136 kb on - strand, within LU632_RS08785 at 1653.140 kb on - strand, within LU632_RS08785 at 1653.140 kb on - strand, within LU632_RS08785 at 1653.209 kb on + strand, within LU632_RS08785
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1) remove 1,649,234 + LU632_RS08770 0.64 -4.4 1,649,453 - LU632_RS08770 0.83 -0.9 1,649,456 + LU632_RS08770 0.83 +0.4 1,649,603 + -2.6 1,649,603 + -0.8 1,649,665 + -1.4 1,649,695 + -2.6 1,649,695 + -2.2 1,649,769 + LU632_RS08775 0.25 -3.3 1,649,770 - LU632_RS08775 0.25 -2.6 1,649,771 + LU632_RS08775 0.26 -1.2 1,649,771 + LU632_RS08775 0.26 -2.6 1,649,772 - LU632_RS08775 0.26 -0.6 1,649,851 - LU632_RS08775 0.44 -2.1 1,649,967 + LU632_RS08775 0.71 -2.6 1,649,968 + LU632_RS08775 0.71 -2.6 1,649,983 + LU632_RS08775 0.74 +1.4 1,650,042 - LU632_RS08775 0.88 -2.6 1,650,048 + LU632_RS08775 0.89 -3.8 1,650,049 - LU632_RS08775 0.89 +1.4 1,650,085 - -1.8 1,650,112 + -0.6 1,650,113 - -2.8 1,650,113 - -4.4 1,650,121 + +0.4 1,650,225 + +0.4 1,650,226 - -5.0 1,650,226 - +1.4 1,650,229 + -2.2 1,650,229 + -2.4 1,650,230 - -0.9 1,650,230 - -2.3 1,650,248 + -1.6 1,650,249 - +1.4 1,650,249 - -0.9 1,650,249 - -2.8 1,650,516 + wzc LU632_RS08780 0.19 -2.2 1,650,517 - wzc LU632_RS08780 0.19 -4.5 1,650,517 - wzc LU632_RS08780 0.19 -1.4 1,650,622 + wzc LU632_RS08780 0.24 -0.2 1,650,739 + wzc LU632_RS08780 0.29 -3.6 1,650,776 - wzc LU632_RS08780 0.31 -4.3 1,650,809 + wzc LU632_RS08780 0.32 -1.6 1,650,866 + wzc LU632_RS08780 0.35 -2.8 1,650,866 + wzc LU632_RS08780 0.35 -2.2 1,650,867 - wzc LU632_RS08780 0.35 -2.6 1,650,867 - wzc LU632_RS08780 0.35 -2.1 1,650,867 - wzc LU632_RS08780 0.35 -0.2 1,650,974 - wzc LU632_RS08780 0.40 -2.3 1,650,982 + wzc LU632_RS08780 0.40 -0.2 1,651,012 + wzc LU632_RS08780 0.41 -3.1 1,651,013 - wzc LU632_RS08780 0.41 -0.2 1,651,013 - wzc LU632_RS08780 0.41 -0.6 1,651,013 - wzc LU632_RS08780 0.41 -1.2 1,651,013 - wzc LU632_RS08780 0.41 -3.9 1,651,052 - wzc LU632_RS08780 0.43 -2.2 1,651,056 + wzc LU632_RS08780 0.43 -0.9 1,651,057 - wzc LU632_RS08780 0.43 -3.0 1,651,127 - wzc LU632_RS08780 0.47 -2.1 1,651,156 + wzc LU632_RS08780 0.48 -0.9 1,651,246 - wzc LU632_RS08780 0.52 -2.6 1,651,265 + wzc LU632_RS08780 0.53 -1.6 1,651,265 + wzc LU632_RS08780 0.53 -2.1 1,651,265 + wzc LU632_RS08780 0.53 -4.4 1,651,265 + wzc LU632_RS08780 0.53 +1.4 1,651,266 - wzc LU632_RS08780 0.53 -1.1 1,651,267 + wzc LU632_RS08780 0.53 +0.4 1,651,509 - wzc LU632_RS08780 0.64 -0.9 1,651,540 + wzc LU632_RS08780 0.66 +1.4 1,651,691 - wzc LU632_RS08780 0.73 +1.4 1,651,700 - wzc LU632_RS08780 0.73 +1.4 1,651,711 + wzc LU632_RS08780 0.73 -0.9 1,651,745 - wzc LU632_RS08780 0.75 -1.2 1,651,798 - wzc LU632_RS08780 0.77 -0.6 1,651,840 - wzc LU632_RS08780 0.79 -2.1 1,651,850 - wzc LU632_RS08780 0.80 -3.9 1,651,850 - wzc LU632_RS08780 0.80 +0.4 1,651,894 - wzc LU632_RS08780 0.82 -1.8 1,651,894 - wzc LU632_RS08780 0.82 -2.0 1,651,894 - wzc LU632_RS08780 0.82 -5.4 1,651,903 + wzc LU632_RS08780 0.82 -4.5 1,652,001 + wzc LU632_RS08780 0.87 -2.5 1,652,002 - wzc LU632_RS08780 0.87 +0.2 1,652,002 - wzc LU632_RS08780 0.87 -3.7 1,652,018 - wzc LU632_RS08780 0.88 -2.1 1,652,024 + wzc LU632_RS08780 0.88 -2.8 1,652,034 + wzc LU632_RS08780 0.88 -4.8 1,652,240 + -1.9 1,652,241 - -3.3 1,652,262 - -5.4 1,652,288 + -3.1 1,652,403 + -2.4 1,652,431 + -2.3 1,652,432 - -0.9 1,652,518 - LU632_RS08785 0.14 -0.6 1,652,632 - LU632_RS08785 0.26 -3.4 1,652,660 - LU632_RS08785 0.29 -2.2 1,652,728 - LU632_RS08785 0.37 -3.9 1,652,768 - LU632_RS08785 0.41 -2.2 1,652,782 - LU632_RS08785 0.43 -3.5 1,652,784 + LU632_RS08785 0.43 -1.4 1,652,855 - LU632_RS08785 0.51 +0.4 1,652,897 + LU632_RS08785 0.55 -3.3 1,653,028 + LU632_RS08785 0.70 -2.6 1,653,028 + LU632_RS08785 0.70 -0.9 1,653,037 - LU632_RS08785 0.71 -2.2 1,653,103 - LU632_RS08785 0.78 -3.9 1,653,136 - LU632_RS08785 0.82 -1.4 1,653,140 - LU632_RS08785 0.82 -4.4 1,653,140 - LU632_RS08785 0.82 -3.7 1,653,209 + LU632_RS08785 0.90 -2.1
Or see this region's nucleotide sequence