Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07965

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
1,490,664	+				-0.8
1,490,816	-				+1.7
1,490,859	-				+1.0
1,490,868	+				-2.3
1,490,869	-				+0.1
1,490,869	-				-0.9
1,490,869	-				+0.7
1,491,278	+				-1.2
1,491,407	+		LU632_RS07965	0.29	+0.4
1,491,407	+		LU632_RS07965	0.29	+0.4
1,491,408	-		LU632_RS07965	0.29	-2.5
1,491,408	-		LU632_RS07965	0.29	-0.8
1,491,408	-		LU632_RS07965	0.29	-0.2
1,491,523	-		LU632_RS07965	0.56	+0.4
1,491,528	+		LU632_RS07965	0.57	-2.5
1,491,528	+		LU632_RS07965	0.57	-1.6
1,491,529	-		LU632_RS07965	0.57	+0.4
1,491,714	+				-2.0
1,491,727	+				-3.2
1,491,728	-				-2.4
1,491,843	+		LU632_RS07970	0.16	+0.4
1,491,843	+		LU632_RS07970	0.16	-3.5
1,491,844	-		LU632_RS07970	0.17	+0.4
1,491,844	-		LU632_RS07970	0.17	-2.1
1,491,844	-		LU632_RS07970	0.17	-3.1
1,491,894	-		LU632_RS07970	0.24	-2.3
1,491,936	+		LU632_RS07970	0.30	+1.4
1,491,936	+		LU632_RS07970	0.30	-0.2
1,491,936	+		LU632_RS07970	0.30	-0.6
1,491,936	+		LU632_RS07970	0.30	-3.3
1,491,937	-		LU632_RS07970	0.30	-2.1
1,491,937	-		LU632_RS07970	0.30	-0.8
1,491,966	+		LU632_RS07970	0.35	-2.3
1,491,967	+		LU632_RS07970	0.35	-0.6
1,491,968	-		LU632_RS07970	0.35	-2.6
1,491,968	-		LU632_RS07970	0.35	+2.7
1,491,968	-		LU632_RS07970	0.35	-1.8
1,491,968	-		LU632_RS07970	0.35	+0.4
1,492,029	-		LU632_RS07970	0.44	-0.9
1,492,149	+		LU632_RS07970	0.62	-0.8
1,492,150	-		LU632_RS07970	0.62	-2.2
1,492,158	+		LU632_RS07970	0.63	+1.4
1,492,203	+		LU632_RS07970	0.70	-1.4
1,492,204	-		LU632_RS07970	0.70	-0.6
1,492,206	-		LU632_RS07970	0.70	-0.6
1,492,236	+		LU632_RS07970	0.75	-1.6
1,492,237	-		LU632_RS07970	0.75	+2.7
1,492,237	-		LU632_RS07970	0.75	-1.6
1,492,237	-		LU632_RS07970	0.75	-1.2
1,492,238	+		LU632_RS07970	0.75	-0.6
1,492,239	-		LU632_RS07970	0.75	-2.2
1,492,415	+				+0.5
1,492,513	-				-0.9
1,492,524	-				-0.0
1,492,600	-				-1.8