Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07545

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
1,418,810	+				+1.9
1,418,958	+		LU632_RS07545	0.12	-1.6
1,418,959	-		LU632_RS07545	0.12	-1.5
1,418,959	-		LU632_RS07545	0.12	-1.2
1,418,963	-		LU632_RS07545	0.12	-1.2
1,418,988	-		LU632_RS07545	0.14	-1.9
1,418,988	-		LU632_RS07545	0.14	+1.4
1,419,124	+		LU632_RS07545	0.24	-2.5
1,419,156	+		LU632_RS07545	0.27	-0.2
1,419,202	-		LU632_RS07545	0.30	-0.5
1,419,271	+		LU632_RS07545	0.35	-1.2
1,419,271	+		LU632_RS07545	0.35	+1.5
1,419,271	+		LU632_RS07545	0.35	-2.7
1,419,272	-		LU632_RS07545	0.35	-1.7
1,419,272	-		LU632_RS07545	0.35	-1.8
1,419,274	+		LU632_RS07545	0.35	+0.6
1,419,274	+		LU632_RS07545	0.35	-1.8
1,419,275	-		LU632_RS07545	0.35	-0.6
1,419,275	-		LU632_RS07545	0.35	+6.4
1,419,275	-		LU632_RS07545	0.35	+2.0
1,419,484	+		LU632_RS07545	0.51	-0.5
1,419,510	+		LU632_RS07545	0.53	-2.8
1,419,545	-		LU632_RS07545	0.55	+1.9
1,419,553	+		LU632_RS07545	0.56	-0.9
1,419,553	+		LU632_RS07545	0.56	-1.4
1,419,604	+		LU632_RS07545	0.60	-1.4
1,419,604	+		LU632_RS07545	0.60	+1.0
1,419,604	+		LU632_RS07545	0.60	-0.3
1,419,659	-		LU632_RS07545	0.64	-0.3
1,419,765	+		LU632_RS07545	0.72	+1.3
1,419,765	+		LU632_RS07545	0.72	-1.6
1,419,766	-		LU632_RS07545	0.72	-0.6
1,419,766	-		LU632_RS07545	0.72	-0.7
1,419,766	-		LU632_RS07545	0.72	-2.5
1,419,817	-		LU632_RS07545	0.76	-1.4
1,419,988	-		LU632_RS07545	0.88	+1.4
1,420,007	+		LU632_RS07545	0.90	-1.7
1,420,199	+				+0.6
1,420,200	-				-0.2
1,420,205	-				-2.9
1,420,241	+				-0.9
1,420,241	+				+1.6
1,420,241	+				-2.7
1,420,242	-				-2.6
1,420,315	+		LU632_RS07550	0.53	-1.3
1,420,378	+				+0.4
1,420,379	-				-0.5
1,420,440	+		LU632_RS07555	0.35	-0.2
1,420,441	+		LU632_RS07555	0.35	-1.8
1,420,466	-		LU632_RS07555	0.43	+0.8
1,420,466	-		LU632_RS07555	0.43	-1.4
1,420,528	+		LU632_RS07555	0.61	+1.0
1,420,529	-		LU632_RS07555	0.62	-1.8
1,420,532	+		LU632_RS07555	0.62	+0.3
1,420,589	+		LU632_RS07555	0.79	-0.1
1,420,670	-				+0.8
1,420,670	-				+1.6
1,420,670	-				-2.3
1,420,673	+				+2.3
1,420,688	-				+0.1
1,420,688	-				+1.4
1,420,712	+				-2.7
1,420,713	-				+0.4
1,420,726	-				+0.0
1,420,800	+				-0.6
1,420,801	-				+1.1
1,420,846	-		LU632_RS07560	0.11	+0.5
1,420,901	+		LU632_RS07560	0.22	+1.0
1,420,901	+		LU632_RS07560	0.22	+3.1