Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06085

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
1,159,447	+		LU632_RS06080	0.33	+1.9
1,159,448	-		LU632_RS06080	0.33	-1.6
1,159,448	-		LU632_RS06080	0.33	+2.6
1,159,620	-		LU632_RS06080	0.50	-1.8
1,159,620	-		LU632_RS06080	0.50	-0.7
1,159,622	-		LU632_RS06080	0.50	-2.2
1,159,709	-		LU632_RS06080	0.58	+0.8
1,159,782	+		LU632_RS06080	0.65	+0.3
1,159,942	+		LU632_RS06080	0.80	-1.4
1,160,130	-				-1.6
1,160,221	-				+1.4
1,160,230	+				-0.4
1,160,354	+				-1.0
1,160,421	-				-0.9
1,160,459	+				-1.4
1,160,459	+				-1.2
1,160,459	+				-0.9
1,160,460	-				+0.9
1,160,460	-				-0.2
1,160,460	-				-0.8
1,160,594	-		LU632_RS06085	0.69	+5.0
1,160,603	+		LU632_RS06085	0.73	+0.7
1,160,603	+		LU632_RS06085	0.73	-0.6
1,160,622	-		LU632_RS06085	0.82	-1.8
1,160,696	+				+3.4
1,160,697	-				-0.2
1,160,706	+				-0.4
1,160,706	+				-1.1
1,160,707	-				-1.4
1,160,707	-				-1.4
1,160,707	-				-1.8
1,160,709	-				+1.0
1,160,742	-				+0.5
1,160,786	-				+2.6
1,160,903	-		LU632_RS06090	0.11	+0.8
1,160,903	-		LU632_RS06090	0.11	+1.9
1,160,946	+		LU632_RS06090	0.17	+0.6
1,160,947	+		LU632_RS06090	0.17	-0.9
1,161,073	+		LU632_RS06090	0.34	-1.2
1,161,074	-		LU632_RS06090	0.35	-1.4
1,161,074	-		LU632_RS06090	0.35	-1.0
1,161,220	-		LU632_RS06090	0.55	-0.6
1,161,220	-		LU632_RS06090	0.55	-0.1
1,161,220	-		LU632_RS06090	0.55	-1.4
1,161,220	-		LU632_RS06090	0.55	-0.3
1,161,220	-		LU632_RS06090	0.55	-1.0
1,161,266	-		LU632_RS06090	0.62	-1.9
1,161,266	-		LU632_RS06090	0.62	-1.6
1,161,343	+		LU632_RS06090	0.72	-0.1
1,161,361	+		LU632_RS06090	0.75	+0.8
1,161,403	+		LU632_RS06090	0.81	+2.2
1,161,452	-		LU632_RS06090	0.88	+3.4
1,161,457	+		LU632_RS06090	0.88	-0.6
1,161,458	-		LU632_RS06090	0.89	-1.6
1,161,603	+				+0.3
1,161,603	+				-0.1
1,161,603	+				+0.7
1,161,603	+				+7.5
1,161,604	-				+0.3
1,161,604	-				+1.2
1,161,604	-				+0.7
1,161,604	-				-0.9
1,161,604	-				-0.2
1,161,607	+				-1.7
1,161,607	+				-2.4
1,161,607	+				-3.2
1,161,607	+				+0.4
1,161,607	+				-0.9
1,161,608	-				+0.2
1,161,608	-				-1.6
1,161,608	-				+2.1
1,161,608	-				-3.4
1,161,614	+				-0.7
1,161,614	+				-0.8
1,161,618	+				-1.8
1,161,618	+				+1.6
1,161,619	-				-1.1