Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hflK and hflC are separated by 3 nucleotides hflC and LU632_RS02075 are separated by 481 nucleotides LU632_RS02075 and LU632_RS02080 are separated by 146 nucleotides
LU632_RS02065: hflK - FtsH protease activity modulator HflK, at 405,933 to 407,174
hflK
LU632_RS02070: hflC - protease modulator HflC, at 407,178 to 408,188
hflC
LU632_RS02075: LU632_RS02075 - transposase, at 408,670 to 409,005
_RS02075
LU632_RS02080: LU632_RS02080 - hypothetical protein, at 409,152 to 409,565
_RS02080
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 406.398 kb on + strand, within hflK at 406.423 kb on - strand, within hflK at 406.480 kb on + strand, within hflK at 406.613 kb on + strand, within hflK at 406.695 kb on + strand, within hflK at 406.695 kb on + strand, within hflK at 406.696 kb on - strand, within hflK at 406.782 kb on + strand, within hflK at 406.885 kb on - strand, within hflK at 407.307 kb on - strand, within hflC at 407.317 kb on + strand, within hflC at 407.452 kb on - strand, within hflC at 407.622 kb on - strand, within hflC at 407.847 kb on + strand, within hflC at 408.057 kb on + strand, within hflC at 408.058 kb on - strand, within hflC at 408.065 kb on + strand, within hflC at 408.179 kb on + strand at 408.186 kb on + strand at 408.187 kb on - strand at 408.222 kb on + strand at 408.223 kb on - strand at 408.314 kb on + strand at 408.337 kb on + strand at 408.347 kb on + strand at 408.348 kb on - strand at 408.402 kb on + strand at 408.425 kb on + strand at 408.425 kb on + strand at 408.425 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.557 kb on + strand at 408.557 kb on + strand at 408.558 kb on - strand at 408.581 kb on - strand at 408.600 kb on + strand at 408.659 kb on - strand at 408.705 kb on + strand, within LU632_RS02075 at 408.878 kb on + strand, within LU632_RS02075 at 408.878 kb on + strand, within LU632_RS02075 at 408.956 kb on - strand, within LU632_RS02075 at 409.065 kb on - strand at 409.068 kb on + strand at 409.069 kb on - strand at 409.069 kb on - strand at 409.069 kb on - strand at 409.098 kb on - strand at 409.106 kb on + strand at 409.130 kb on + strand at 409.138 kb on - strand at 409.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1) remove 406,398 + hflK LU632_RS02065 0.37 -1.1 406,423 - hflK LU632_RS02065 0.39 +0.0 406,480 + hflK LU632_RS02065 0.44 -2.3 406,613 + hflK LU632_RS02065 0.55 +0.6 406,695 + hflK LU632_RS02065 0.61 -0.4 406,695 + hflK LU632_RS02065 0.61 -1.8 406,696 - hflK LU632_RS02065 0.61 -0.4 406,782 + hflK LU632_RS02065 0.68 +0.6 406,885 - hflK LU632_RS02065 0.77 -1.2 407,307 - hflC LU632_RS02070 0.13 +0.0 407,317 + hflC LU632_RS02070 0.14 -0.7 407,452 - hflC LU632_RS02070 0.27 -0.7 407,622 - hflC LU632_RS02070 0.44 -0.7 407,847 + hflC LU632_RS02070 0.66 -2.7 408,057 + hflC LU632_RS02070 0.87 -0.7 408,058 - hflC LU632_RS02070 0.87 +0.6 408,065 + hflC LU632_RS02070 0.88 -2.1 408,179 + -0.9 408,186 + -1.4 408,187 - +0.2 408,222 + -0.4 408,223 - +1.9 408,314 + +0.1 408,337 + +0.9 408,347 + +0.3 408,348 - -1.0 408,402 + -1.7 408,425 + +0.6 408,425 + -1.2 408,425 - -0.1 408,426 - -2.1 408,426 - -2.0 408,426 - +1.2 408,426 - +1.9 408,426 - +3.2 408,426 - -0.7 408,557 + +1.6 408,557 + +0.8 408,558 - +2.6 408,581 - +1.0 408,600 + -3.1 408,659 - -0.7 408,705 + LU632_RS02075 0.10 +0.5 408,878 + LU632_RS02075 0.62 +0.6 408,878 + LU632_RS02075 0.62 -1.4 408,956 - LU632_RS02075 0.85 +0.3 409,065 - -1.2 409,068 + +0.3 409,069 - +2.2 409,069 - -0.4 409,069 - -1.3 409,098 - -0.1 409,106 + +1.0 409,130 + -0.2 409,138 - +0.6 409,165 - -1.2
Or see this region's nucleotide sequence