Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00815

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntugpC and LU632_RS00810 are separated by 27 nucleotidesLU632_RS00810 and LU632_RS00815 overlap by 11 nucleotidesLU632_RS00815 and LU632_RS00820 are separated by 9 nucleotides LU632_RS00805: ugpC - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 175,371 to 176,495 ugpC LU632_RS00810: LU632_RS00810 - carbohydrate ABC transporter permease, at 176,523 to 177,362 _RS00810 LU632_RS00815: LU632_RS00815 - sugar ABC transporter permease, at 177,352 to 178,260 _RS00815 LU632_RS00820: LU632_RS00820 - extracellular solute-binding protein, at 178,270 to 179,520 _RS00820 Position (kb) 177 178 179Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 176.496 kb on - strandat 176.585 kb on + strandat 176.586 kb on - strandat 176.589 kb on + strandat 176.696 kb on + strand, within LU632_RS00810at 176.697 kb on - strand, within LU632_RS00810at 176.697 kb on - strand, within LU632_RS00810at 176.697 kb on - strand, within LU632_RS00810at 176.697 kb on - strand, within LU632_RS00810at 176.705 kb on + strand, within LU632_RS00810at 176.719 kb on + strand, within LU632_RS00810at 176.720 kb on - strand, within LU632_RS00810at 176.867 kb on + strand, within LU632_RS00810at 176.868 kb on - strand, within LU632_RS00810at 176.920 kb on + strand, within LU632_RS00810at 176.921 kb on - strand, within LU632_RS00810at 176.946 kb on - strand, within LU632_RS00810at 177.011 kb on + strand, within LU632_RS00810at 177.011 kb on + strand, within LU632_RS00810at 177.012 kb on - strand, within LU632_RS00810at 177.012 kb on - strand, within LU632_RS00810at 177.013 kb on + strand, within LU632_RS00810at 177.013 kb on - strand, within LU632_RS00810at 177.014 kb on - strand, within LU632_RS00810at 177.014 kb on - strand, within LU632_RS00810at 177.353 kb on + strandat 177.363 kb on - strandat 177.404 kb on + strandat 177.404 kb on + strandat 177.404 kb on + strandat 177.405 kb on - strandat 177.405 kb on - strandat 177.412 kb on + strandat 177.449 kb on + strand, within LU632_RS00815at 177.495 kb on - strand, within LU632_RS00815at 177.551 kb on + strand, within LU632_RS00815at 177.551 kb on + strand, within LU632_RS00815at 177.551 kb on + strand, within LU632_RS00815at 177.551 kb on + strand, within LU632_RS00815at 177.552 kb on - strand, within LU632_RS00815at 177.552 kb on - strand, within LU632_RS00815at 177.728 kb on - strand, within LU632_RS00815at 177.957 kb on - strand, within LU632_RS00815at 178.032 kb on - strand, within LU632_RS00815at 178.080 kb on - strand, within LU632_RS00815at 178.086 kb on - strand, within LU632_RS00815at 178.086 kb on - strand, within LU632_RS00815at 178.104 kb on - strand, within LU632_RS00815at 178.122 kb on + strand, within LU632_RS00815at 178.122 kb on + strand, within LU632_RS00815at 178.123 kb on - strand, within LU632_RS00815at 178.126 kb on + strand, within LU632_RS00815at 178.127 kb on - strand, within LU632_RS00815at 178.127 kb on - strand, within LU632_RS00815at 178.198 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.272 kb on - strandat 178.365 kb on + strandat 178.365 kb on + strandat 178.478 kb on + strand, within LU632_RS00820at 178.478 kb on + strand, within LU632_RS00820at 178.514 kb on + strand, within LU632_RS00820at 178.515 kb on - strand, within LU632_RS00820at 178.551 kb on + strand, within LU632_RS00820at 178.551 kb on + strand, within LU632_RS00820at 178.551 kb on + strand, within LU632_RS00820at 178.552 kb on - strand, within LU632_RS00820at 178.553 kb on + strand, within LU632_RS00820at 178.554 kb on - strand, within LU632_RS00820at 178.680 kb on + strand, within LU632_RS00820at 178.709 kb on + strand, within LU632_RS00820at 178.710 kb on - strand, within LU632_RS00820at 178.710 kb on - strand, within LU632_RS00820at 178.710 kb on - strand, within LU632_RS00820at 178.713 kb on + strand, within LU632_RS00820at 178.713 kb on + strand, within LU632_RS00820at 178.714 kb on - strand, within LU632_RS00820at 178.715 kb on + strand, within LU632_RS00820at 178.715 kb on + strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.716 kb on - strand, within LU632_RS00820at 178.781 kb on + strand, within LU632_RS00820at 178.782 kb on - strand, within LU632_RS00820at 178.922 kb on + strand, within LU632_RS00820at 178.923 kb on - strand, within LU632_RS00820at 179.075 kb on + strand, within LU632_RS00820at 179.076 kb on - strand, within LU632_RS00820at 179.076 kb on - strand, within LU632_RS00820at 179.085 kb on - strand, within LU632_RS00820at 179.089 kb on - strand, within LU632_RS00820at 179.239 kb on - strand, within LU632_RS00820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
remove
176,496 - +2.3
176,585 + -1.6
176,586 - -0.9
176,589 + -0.5
176,696 + LU632_RS00810 0.21 -0.0
176,697 - LU632_RS00810 0.21 -2.2
176,697 - LU632_RS00810 0.21 -1.3
176,697 - LU632_RS00810 0.21 +4.5
176,697 - LU632_RS00810 0.21 +0.9
176,705 + LU632_RS00810 0.22 +0.7
176,719 + LU632_RS00810 0.23 -0.9
176,720 - LU632_RS00810 0.23 -2.2
176,867 + LU632_RS00810 0.41 -2.3
176,868 - LU632_RS00810 0.41 -1.3
176,920 + LU632_RS00810 0.47 +2.4
176,921 - LU632_RS00810 0.47 -1.6
176,946 - LU632_RS00810 0.50 -1.1
177,011 + LU632_RS00810 0.58 -1.1
177,011 + LU632_RS00810 0.58 -1.1
177,012 - LU632_RS00810 0.58 -0.9
177,012 - LU632_RS00810 0.58 -3.8
177,013 + LU632_RS00810 0.58 +0.7
177,013 - LU632_RS00810 0.58 +1.6
177,014 - LU632_RS00810 0.58 +0.2
177,014 - LU632_RS00810 0.58 -1.3
177,353 + -0.1
177,363 - -2.5
177,404 + +0.7
177,404 + +0.7
177,404 + +0.9
177,405 - +0.0
177,405 - +1.3
177,412 + -0.0
177,449 + LU632_RS00815 0.11 -1.7
177,495 - LU632_RS00815 0.16 +0.5
177,551 + LU632_RS00815 0.22 +0.3
177,551 + LU632_RS00815 0.22 -0.0
177,551 + LU632_RS00815 0.22 -1.4
177,551 + LU632_RS00815 0.22 +1.7
177,552 - LU632_RS00815 0.22 -1.7
177,552 - LU632_RS00815 0.22 +0.1
177,728 - LU632_RS00815 0.41 -2.5
177,957 - LU632_RS00815 0.67 -1.7
178,032 - LU632_RS00815 0.75 +0.7
178,080 - LU632_RS00815 0.80 -0.7
178,086 - LU632_RS00815 0.81 -0.6
178,086 - LU632_RS00815 0.81 -2.9
178,104 - LU632_RS00815 0.83 +1.4
178,122 + LU632_RS00815 0.85 +0.7
178,122 + LU632_RS00815 0.85 +1.1
178,123 - LU632_RS00815 0.85 -0.5
178,126 + LU632_RS00815 0.85 +1.1
178,127 - LU632_RS00815 0.85 -0.9
178,127 - LU632_RS00815 0.85 +0.8
178,198 + +1.1
178,271 + -2.9
178,271 + -1.5
178,271 + -3.2
178,271 + +0.7
178,271 + +1.1
178,271 + -1.0
178,271 + -1.7
178,272 - +0.4
178,365 + -2.6
178,365 + -0.3
178,478 + LU632_RS00820 0.17 -3.4
178,478 + LU632_RS00820 0.17 +3.3
178,514 + LU632_RS00820 0.20 -0.3
178,515 - LU632_RS00820 0.20 -0.6
178,551 + LU632_RS00820 0.22 -0.6
178,551 + LU632_RS00820 0.22 -1.5
178,551 + LU632_RS00820 0.22 +0.5
178,552 - LU632_RS00820 0.23 -1.5
178,553 + LU632_RS00820 0.23 +0.0
178,554 - LU632_RS00820 0.23 -1.5
178,680 + LU632_RS00820 0.33 +1.7
178,709 + LU632_RS00820 0.35 -0.6
178,710 - LU632_RS00820 0.35 +0.1
178,710 - LU632_RS00820 0.35 -1.8
178,710 - LU632_RS00820 0.35 -1.2
178,713 + LU632_RS00820 0.35 +1.7
178,713 + LU632_RS00820 0.35 -1.2
178,714 - LU632_RS00820 0.35 +1.7
178,715 + LU632_RS00820 0.36 -1.3
178,715 + LU632_RS00820 0.36 +0.1
178,716 - LU632_RS00820 0.36 +3.9
178,716 - LU632_RS00820 0.36 -0.2
178,716 - LU632_RS00820 0.36 -2.4
178,716 - LU632_RS00820 0.36 +0.7
178,716 - LU632_RS00820 0.36 +1.0
178,716 - LU632_RS00820 0.36 -0.6
178,716 - LU632_RS00820 0.36 +0.7
178,781 + LU632_RS00820 0.41 +1.2
178,782 - LU632_RS00820 0.41 -0.6
178,922 + LU632_RS00820 0.52 -1.3
178,923 - LU632_RS00820 0.52 +0.7
179,075 + LU632_RS00820 0.64 -0.9
179,076 - LU632_RS00820 0.64 +1.8
179,076 - LU632_RS00820 0.64 -3.1
179,085 - LU632_RS00820 0.65 -1.1
179,089 - LU632_RS00820 0.65 +0.6
179,239 - LU632_RS00820 0.77 +1.0

Or see this region's nucleotide sequence