Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS14055 and HMPREF1181_RS14060 are separated by 41 nucleotides HMPREF1181_RS14060 and HMPREF1181_RS14065 are separated by 216 nucleotides HMPREF1181_RS14065 and HMPREF1181_RS18165 are separated by 191 nucleotides HMPREF1181_RS18165 and HMPREF1181_RS14070 are separated by 128 nucleotides
HMPREF1181_RS14055: HMPREF1181_RS14055 - chaperonin GroEL, at 333,889 to 335,526
_RS14055
HMPREF1181_RS14060: HMPREF1181_RS14060 - co-chaperone GroES, at 335,568 to 335,840
_RS14060
HMPREF1181_RS14065: HMPREF1181_RS14065 - glutamine synthetase, at 336,057 to 337,559
_RS14065
HMPREF1181_RS18165: HMPREF1181_RS18165 - hypothetical protein, at 337,751 to 337,909
_RS18165
HMPREF1181_RS14070: HMPREF1181_RS14070 - histidine--tRNA ligase, at 338,038 to 339,399
_RS14070
Position (kb) 336
337
338 Strain fitness (log2 ratio) -2
-1
0
1 at 335.559 kb on - strand at 335.989 kb on + strand at 335.990 kb on - strand at 336.034 kb on + strand at 336.035 kb on - strand at 336.035 kb on - strand at 336.037 kb on + strand at 336.040 kb on - strand at 336.074 kb on - strand at 336.107 kb on + strand at 336.122 kb on + strand at 336.135 kb on - strand at 336.142 kb on + strand at 336.161 kb on + strand at 336.197 kb on - strand at 336.305 kb on + strand, within HMPREF1181_RS14065 at 336.375 kb on + strand, within HMPREF1181_RS14065 at 336.500 kb on + strand, within HMPREF1181_RS14065 at 336.534 kb on + strand, within HMPREF1181_RS14065 at 336.569 kb on + strand, within HMPREF1181_RS14065 at 336.607 kb on + strand, within HMPREF1181_RS14065 at 336.608 kb on - strand, within HMPREF1181_RS14065 at 336.614 kb on + strand, within HMPREF1181_RS14065 at 336.620 kb on + strand, within HMPREF1181_RS14065 at 336.806 kb on - strand, within HMPREF1181_RS14065 at 336.911 kb on - strand, within HMPREF1181_RS14065 at 336.912 kb on + strand, within HMPREF1181_RS14065 at 336.912 kb on + strand, within HMPREF1181_RS14065 at 336.913 kb on - strand, within HMPREF1181_RS14065 at 336.960 kb on - strand, within HMPREF1181_RS14065 at 336.992 kb on + strand, within HMPREF1181_RS14065 at 337.093 kb on + strand, within HMPREF1181_RS14065 at 337.096 kb on + strand, within HMPREF1181_RS14065 at 337.143 kb on - strand, within HMPREF1181_RS14065 at 337.236 kb on - strand, within HMPREF1181_RS14065 at 337.260 kb on - strand, within HMPREF1181_RS14065 at 337.260 kb on - strand, within HMPREF1181_RS14065 at 337.284 kb on + strand, within HMPREF1181_RS14065 at 337.284 kb on + strand, within HMPREF1181_RS14065 at 337.284 kb on + strand, within HMPREF1181_RS14065 at 337.285 kb on - strand, within HMPREF1181_RS14065 at 337.288 kb on + strand, within HMPREF1181_RS14065 at 337.291 kb on - strand, within HMPREF1181_RS14065 at 337.355 kb on + strand, within HMPREF1181_RS14065 at 337.430 kb on - strand at 337.464 kb on + strand at 337.465 kb on - strand at 337.611 kb on - strand at 337.637 kb on + strand at 337.640 kb on - strand at 337.696 kb on + strand at 337.700 kb on + strand at 337.700 kb on + strand at 337.701 kb on - strand at 337.701 kb on - strand at 337.769 kb on + strand, within HMPREF1181_RS18165 at 337.776 kb on + strand, within HMPREF1181_RS18165 at 337.824 kb on + strand, within HMPREF1181_RS18165 at 337.824 kb on + strand, within HMPREF1181_RS18165 at 337.957 kb on - strand at 337.957 kb on - strand at 337.984 kb on + strand at 338.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C) remove 335,559 - -0.1 335,989 + +0.2 335,990 - -1.5 336,034 + +0.0 336,035 - +0.2 336,035 - +0.1 336,037 + -0.1 336,040 - +0.3 336,074 - -0.2 336,107 + -1.4 336,122 + +0.5 336,135 - +0.0 336,142 + -1.1 336,161 + +1.3 336,197 - -0.0 336,305 + HMPREF1181_RS14065 0.17 -0.1 336,375 + HMPREF1181_RS14065 0.21 -2.6 336,500 + HMPREF1181_RS14065 0.29 +0.9 336,534 + HMPREF1181_RS14065 0.32 -0.7 336,569 + HMPREF1181_RS14065 0.34 -0.6 336,607 + HMPREF1181_RS14065 0.37 -2.5 336,608 - HMPREF1181_RS14065 0.37 -0.1 336,614 + HMPREF1181_RS14065 0.37 -0.6 336,620 + HMPREF1181_RS14065 0.37 -0.2 336,806 - HMPREF1181_RS14065 0.50 -0.3 336,911 - HMPREF1181_RS14065 0.57 -0.5 336,912 + HMPREF1181_RS14065 0.57 -0.3 336,912 + HMPREF1181_RS14065 0.57 -1.5 336,913 - HMPREF1181_RS14065 0.57 -0.0 336,960 - HMPREF1181_RS14065 0.60 +0.5 336,992 + HMPREF1181_RS14065 0.62 +1.1 337,093 + HMPREF1181_RS14065 0.69 -0.1 337,096 + HMPREF1181_RS14065 0.69 -0.1 337,143 - HMPREF1181_RS14065 0.72 -2.3 337,236 - HMPREF1181_RS14065 0.78 -0.2 337,260 - HMPREF1181_RS14065 0.80 -0.1 337,260 - HMPREF1181_RS14065 0.80 +0.1 337,284 + HMPREF1181_RS14065 0.82 -1.0 337,284 + HMPREF1181_RS14065 0.82 +0.8 337,284 + HMPREF1181_RS14065 0.82 +0.1 337,285 - HMPREF1181_RS14065 0.82 +0.1 337,288 + HMPREF1181_RS14065 0.82 -0.3 337,291 - HMPREF1181_RS14065 0.82 -0.3 337,355 + HMPREF1181_RS14065 0.86 -0.1 337,430 - -0.9 337,464 + +0.7 337,465 - -1.1 337,611 - +0.1 337,637 + -0.8 337,640 - -0.3 337,696 + +0.2 337,700 + +0.2 337,700 + -0.4 337,701 - -0.1 337,701 - -0.9 337,769 + HMPREF1181_RS18165 0.11 +0.9 337,776 + HMPREF1181_RS18165 0.16 -0.3 337,824 + HMPREF1181_RS18165 0.46 -0.8 337,824 + HMPREF1181_RS18165 0.46 -0.9 337,957 - -0.1 337,957 - +0.1 337,984 + -0.4 338,025 - -1.2
Or see this region's nucleotide sequence