Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS01420

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS01415 and HMPREF1181_RS01420 are separated by 176 nucleotidesHMPREF1181_RS01420 and HMPREF1181_RS01425 are separated by 106 nucleotides HMPREF1181_RS01415: HMPREF1181_RS01415 - RagB/SusD family nutrient uptake outer membrane protein, at 338,217 to 339,815 _RS01415 HMPREF1181_RS01420: HMPREF1181_RS01420 - hypothetical protein, at 339,992 to 342,892 _RS01420 HMPREF1181_RS01425: HMPREF1181_RS01425 - hypothetical protein, at 342,999 to 344,207 _RS01425 Position (kb) 339 340 341 342 343Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 338.997 kb on - strand, within HMPREF1181_RS01415at 339.000 kb on + strand, within HMPREF1181_RS01415at 339.001 kb on - strand, within HMPREF1181_RS01415at 339.001 kb on - strand, within HMPREF1181_RS01415at 339.005 kb on + strand, within HMPREF1181_RS01415at 339.006 kb on - strand, within HMPREF1181_RS01415at 339.033 kb on + strand, within HMPREF1181_RS01415at 339.033 kb on + strand, within HMPREF1181_RS01415at 339.033 kb on + strand, within HMPREF1181_RS01415at 339.086 kb on + strand, within HMPREF1181_RS01415at 339.086 kb on + strand, within HMPREF1181_RS01415at 339.108 kb on + strand, within HMPREF1181_RS01415at 339.110 kb on + strand, within HMPREF1181_RS01415at 339.137 kb on - strand, within HMPREF1181_RS01415at 339.193 kb on - strand, within HMPREF1181_RS01415at 339.209 kb on - strand, within HMPREF1181_RS01415at 339.277 kb on + strand, within HMPREF1181_RS01415at 339.277 kb on + strand, within HMPREF1181_RS01415at 339.277 kb on + strand, within HMPREF1181_RS01415at 339.424 kb on + strand, within HMPREF1181_RS01415at 339.478 kb on - strand, within HMPREF1181_RS01415at 339.540 kb on - strand, within HMPREF1181_RS01415at 339.606 kb on + strand, within HMPREF1181_RS01415at 339.626 kb on + strand, within HMPREF1181_RS01415at 339.626 kb on + strand, within HMPREF1181_RS01415at 339.630 kb on + strand, within HMPREF1181_RS01415at 339.631 kb on - strand, within HMPREF1181_RS01415at 339.631 kb on - strand, within HMPREF1181_RS01415at 339.644 kb on - strand, within HMPREF1181_RS01415at 339.644 kb on - strand, within HMPREF1181_RS01415at 339.655 kb on + strand, within HMPREF1181_RS01415at 339.801 kb on - strandat 339.804 kb on + strandat 339.818 kb on + strandat 339.942 kb on + strandat 340.012 kb on - strandat 340.014 kb on - strandat 340.014 kb on - strandat 340.042 kb on - strandat 340.133 kb on + strandat 340.246 kb on + strandat 340.246 kb on + strandat 340.246 kb on + strandat 340.318 kb on + strand, within HMPREF1181_RS01420at 340.318 kb on + strand, within HMPREF1181_RS01420at 340.318 kb on + strand, within HMPREF1181_RS01420at 340.320 kb on + strand, within HMPREF1181_RS01420at 340.320 kb on + strand, within HMPREF1181_RS01420at 340.399 kb on + strand, within HMPREF1181_RS01420at 340.399 kb on + strand, within HMPREF1181_RS01420at 340.534 kb on + strand, within HMPREF1181_RS01420at 340.534 kb on + strand, within HMPREF1181_RS01420at 340.618 kb on + strand, within HMPREF1181_RS01420at 340.726 kb on + strand, within HMPREF1181_RS01420at 340.726 kb on + strand, within HMPREF1181_RS01420at 340.727 kb on - strand, within HMPREF1181_RS01420at 340.727 kb on - strand, within HMPREF1181_RS01420at 340.786 kb on - strand, within HMPREF1181_RS01420at 340.824 kb on + strand, within HMPREF1181_RS01420at 340.874 kb on + strand, within HMPREF1181_RS01420at 340.877 kb on + strand, within HMPREF1181_RS01420at 340.878 kb on - strand, within HMPREF1181_RS01420at 340.878 kb on - strand, within HMPREF1181_RS01420at 340.907 kb on + strand, within HMPREF1181_RS01420at 340.926 kb on - strand, within HMPREF1181_RS01420at 341.134 kb on - strand, within HMPREF1181_RS01420at 341.150 kb on - strand, within HMPREF1181_RS01420at 341.150 kb on - strand, within HMPREF1181_RS01420at 341.150 kb on - strand, within HMPREF1181_RS01420at 341.256 kb on - strand, within HMPREF1181_RS01420at 341.257 kb on + strand, within HMPREF1181_RS01420at 341.257 kb on + strand, within HMPREF1181_RS01420at 341.278 kb on + strand, within HMPREF1181_RS01420at 341.278 kb on + strand, within HMPREF1181_RS01420at 341.279 kb on - strand, within HMPREF1181_RS01420at 341.282 kb on - strand, within HMPREF1181_RS01420at 341.327 kb on + strand, within HMPREF1181_RS01420at 341.328 kb on - strand, within HMPREF1181_RS01420at 341.347 kb on + strand, within HMPREF1181_RS01420at 341.400 kb on + strand, within HMPREF1181_RS01420at 341.401 kb on - strand, within HMPREF1181_RS01420at 341.401 kb on - strand, within HMPREF1181_RS01420at 341.415 kb on + strand, within HMPREF1181_RS01420at 341.477 kb on - strand, within HMPREF1181_RS01420at 341.524 kb on - strand, within HMPREF1181_RS01420at 341.623 kb on + strand, within HMPREF1181_RS01420at 341.623 kb on + strand, within HMPREF1181_RS01420at 341.623 kb on + strand, within HMPREF1181_RS01420at 341.627 kb on - strand, within HMPREF1181_RS01420at 341.662 kb on - strand, within HMPREF1181_RS01420at 341.696 kb on + strand, within HMPREF1181_RS01420at 341.732 kb on - strand, within HMPREF1181_RS01420at 341.732 kb on - strand, within HMPREF1181_RS01420at 341.838 kb on + strand, within HMPREF1181_RS01420at 341.919 kb on + strand, within HMPREF1181_RS01420at 341.919 kb on + strand, within HMPREF1181_RS01420at 341.919 kb on + strand, within HMPREF1181_RS01420at 341.962 kb on + strand, within HMPREF1181_RS01420at 341.962 kb on + strand, within HMPREF1181_RS01420at 341.962 kb on + strand, within HMPREF1181_RS01420at 341.962 kb on + strand, within HMPREF1181_RS01420at 341.963 kb on - strand, within HMPREF1181_RS01420at 342.271 kb on + strand, within HMPREF1181_RS01420at 342.272 kb on - strand, within HMPREF1181_RS01420at 342.312 kb on - strand, within HMPREF1181_RS01420at 342.312 kb on - strand, within HMPREF1181_RS01420at 342.340 kb on - strand, within HMPREF1181_RS01420at 342.452 kb on + strand, within HMPREF1181_RS01420at 342.452 kb on + strand, within HMPREF1181_RS01420at 342.465 kb on + strand, within HMPREF1181_RS01420at 342.465 kb on + strand, within HMPREF1181_RS01420at 342.579 kb on - strand, within HMPREF1181_RS01420at 342.750 kb on + strandat 343.054 kb on + strandat 343.069 kb on + strandat 343.093 kb on + strandat 343.094 kb on - strandat 343.099 kb on + strandat 343.099 kb on + strandat 343.246 kb on + strand, within HMPREF1181_RS01425at 343.324 kb on + strand, within HMPREF1181_RS01425at 343.325 kb on - strand, within HMPREF1181_RS01425at 343.376 kb on + strand, within HMPREF1181_RS01425at 343.377 kb on - strand, within HMPREF1181_RS01425at 343.377 kb on - strand, within HMPREF1181_RS01425at 343.381 kb on + strand, within HMPREF1181_RS01425at 343.392 kb on - strand, within HMPREF1181_RS01425at 343.450 kb on - strand, within HMPREF1181_RS01425at 343.529 kb on + strand, within HMPREF1181_RS01425at 343.607 kb on - strand, within HMPREF1181_RS01425at 343.654 kb on + strand, within HMPREF1181_RS01425at 343.655 kb on - strand, within HMPREF1181_RS01425at 343.655 kb on - strand, within HMPREF1181_RS01425at 343.708 kb on + strand, within HMPREF1181_RS01425at 343.729 kb on + strand, within HMPREF1181_RS01425at 343.730 kb on - strand, within HMPREF1181_RS01425at 343.855 kb on - strand, within HMPREF1181_RS01425at 343.855 kb on - strand, within HMPREF1181_RS01425at 343.855 kb on - strand, within HMPREF1181_RS01425at 343.855 kb on - strand, within HMPREF1181_RS01425

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
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338,997 - HMPREF1181_RS01415 0.49 +0.2
339,000 + HMPREF1181_RS01415 0.49 +0.3
339,001 - HMPREF1181_RS01415 0.49 -0.3
339,001 - HMPREF1181_RS01415 0.49 -0.6
339,005 + HMPREF1181_RS01415 0.49 +0.4
339,006 - HMPREF1181_RS01415 0.49 +1.2
339,033 + HMPREF1181_RS01415 0.51 +0.2
339,033 + HMPREF1181_RS01415 0.51 +0.4
339,033 + HMPREF1181_RS01415 0.51 -0.1
339,086 + HMPREF1181_RS01415 0.54 +0.4
339,086 + HMPREF1181_RS01415 0.54 +0.1
339,108 + HMPREF1181_RS01415 0.56 +0.2
339,110 + HMPREF1181_RS01415 0.56 +0.3
339,137 - HMPREF1181_RS01415 0.58 -0.7
339,193 - HMPREF1181_RS01415 0.61 -1.1
339,209 - HMPREF1181_RS01415 0.62 +0.0
339,277 + HMPREF1181_RS01415 0.66 +0.0
339,277 + HMPREF1181_RS01415 0.66 +1.2
339,277 + HMPREF1181_RS01415 0.66 -0.3
339,424 + HMPREF1181_RS01415 0.75 +0.5
339,478 - HMPREF1181_RS01415 0.79 +0.1
339,540 - HMPREF1181_RS01415 0.83 +0.5
339,606 + HMPREF1181_RS01415 0.87 +0.3
339,626 + HMPREF1181_RS01415 0.88 +0.4
339,626 + HMPREF1181_RS01415 0.88 -0.3
339,630 + HMPREF1181_RS01415 0.88 +0.4
339,631 - HMPREF1181_RS01415 0.88 -2.6
339,631 - HMPREF1181_RS01415 0.88 +0.1
339,644 - HMPREF1181_RS01415 0.89 -0.5
339,644 - HMPREF1181_RS01415 0.89 +0.1
339,655 + HMPREF1181_RS01415 0.90 +0.9
339,801 - -0.2
339,804 + +0.1
339,818 + +0.8
339,942 + -0.5
340,012 - +0.5
340,014 - -1.5
340,014 - -0.5
340,042 - -0.1
340,133 + -0.0
340,246 + -0.1
340,246 + +1.7
340,246 + +0.2
340,318 + HMPREF1181_RS01420 0.11 -1.0
340,318 + HMPREF1181_RS01420 0.11 -0.8
340,318 + HMPREF1181_RS01420 0.11 +0.3
340,320 + HMPREF1181_RS01420 0.11 +1.9
340,320 + HMPREF1181_RS01420 0.11 +0.4
340,399 + HMPREF1181_RS01420 0.14 -1.3
340,399 + HMPREF1181_RS01420 0.14 +1.2
340,534 + HMPREF1181_RS01420 0.19 +0.1
340,534 + HMPREF1181_RS01420 0.19 +0.1
340,618 + HMPREF1181_RS01420 0.22 -2.6
340,726 + HMPREF1181_RS01420 0.25 -0.5
340,726 + HMPREF1181_RS01420 0.25 -1.5
340,727 - HMPREF1181_RS01420 0.25 +0.0
340,727 - HMPREF1181_RS01420 0.25 +0.2
340,786 - HMPREF1181_RS01420 0.27 -0.3
340,824 + HMPREF1181_RS01420 0.29 -1.0
340,874 + HMPREF1181_RS01420 0.30 +0.3
340,877 + HMPREF1181_RS01420 0.31 -0.4
340,878 - HMPREF1181_RS01420 0.31 -0.1
340,878 - HMPREF1181_RS01420 0.31 -0.2
340,907 + HMPREF1181_RS01420 0.32 -1.4
340,926 - HMPREF1181_RS01420 0.32 -0.5
341,134 - HMPREF1181_RS01420 0.39 +0.2
341,150 - HMPREF1181_RS01420 0.40 -0.2
341,150 - HMPREF1181_RS01420 0.40 -0.2
341,150 - HMPREF1181_RS01420 0.40 -0.3
341,256 - HMPREF1181_RS01420 0.44 -0.4
341,257 + HMPREF1181_RS01420 0.44 +0.1
341,257 + HMPREF1181_RS01420 0.44 +0.5
341,278 + HMPREF1181_RS01420 0.44 -0.1
341,278 + HMPREF1181_RS01420 0.44 -0.1
341,279 - HMPREF1181_RS01420 0.44 -0.4
341,282 - HMPREF1181_RS01420 0.44 -1.5
341,327 + HMPREF1181_RS01420 0.46 +0.1
341,328 - HMPREF1181_RS01420 0.46 -0.3
341,347 + HMPREF1181_RS01420 0.47 -0.3
341,400 + HMPREF1181_RS01420 0.49 +0.1
341,401 - HMPREF1181_RS01420 0.49 +0.3
341,401 - HMPREF1181_RS01420 0.49 +0.2
341,415 + HMPREF1181_RS01420 0.49 -0.4
341,477 - HMPREF1181_RS01420 0.51 +1.0
341,524 - HMPREF1181_RS01420 0.53 -0.1
341,623 + HMPREF1181_RS01420 0.56 -1.8
341,623 + HMPREF1181_RS01420 0.56 +0.1
341,623 + HMPREF1181_RS01420 0.56 -0.2
341,627 - HMPREF1181_RS01420 0.56 -0.4
341,662 - HMPREF1181_RS01420 0.58 +0.6
341,696 + HMPREF1181_RS01420 0.59 +0.3
341,732 - HMPREF1181_RS01420 0.60 +0.5
341,732 - HMPREF1181_RS01420 0.60 +0.9
341,838 + HMPREF1181_RS01420 0.64 +0.0
341,919 + HMPREF1181_RS01420 0.66 -0.1
341,919 + HMPREF1181_RS01420 0.66 -0.5
341,919 + HMPREF1181_RS01420 0.66 +0.5
341,962 + HMPREF1181_RS01420 0.68 +0.3
341,962 + HMPREF1181_RS01420 0.68 +0.3
341,962 + HMPREF1181_RS01420 0.68 +0.4
341,962 + HMPREF1181_RS01420 0.68 -1.9
341,963 - HMPREF1181_RS01420 0.68 +0.4
342,271 + HMPREF1181_RS01420 0.79 -0.2
342,272 - HMPREF1181_RS01420 0.79 +1.1
342,312 - HMPREF1181_RS01420 0.80 -1.4
342,312 - HMPREF1181_RS01420 0.80 +1.6
342,340 - HMPREF1181_RS01420 0.81 +0.2
342,452 + HMPREF1181_RS01420 0.85 +0.1
342,452 + HMPREF1181_RS01420 0.85 -0.1
342,465 + HMPREF1181_RS01420 0.85 -0.1
342,465 + HMPREF1181_RS01420 0.85 +0.4
342,579 - HMPREF1181_RS01420 0.89 -1.2
342,750 + -0.3
343,054 + -0.4
343,069 + +0.6
343,093 + -3.0
343,094 - +0.1
343,099 + -0.2
343,099 + -1.3
343,246 + HMPREF1181_RS01425 0.20 +0.1
343,324 + HMPREF1181_RS01425 0.27 -0.1
343,325 - HMPREF1181_RS01425 0.27 -1.1
343,376 + HMPREF1181_RS01425 0.31 -0.8
343,377 - HMPREF1181_RS01425 0.31 -1.2
343,377 - HMPREF1181_RS01425 0.31 -1.5
343,381 + HMPREF1181_RS01425 0.32 -1.4
343,392 - HMPREF1181_RS01425 0.33 -0.3
343,450 - HMPREF1181_RS01425 0.37 +0.1
343,529 + HMPREF1181_RS01425 0.44 -0.2
343,607 - HMPREF1181_RS01425 0.50 -1.5
343,654 + HMPREF1181_RS01425 0.54 +0.1
343,655 - HMPREF1181_RS01425 0.54 -2.1
343,655 - HMPREF1181_RS01425 0.54 +0.8
343,708 + HMPREF1181_RS01425 0.59 +1.5
343,729 + HMPREF1181_RS01425 0.60 +0.0
343,730 - HMPREF1181_RS01425 0.60 +0.2
343,855 - HMPREF1181_RS01425 0.71 +0.5
343,855 - HMPREF1181_RS01425 0.71 +0.5
343,855 - HMPREF1181_RS01425 0.71 -0.9
343,855 - HMPREF1181_RS01425 0.71 -0.2

Or see this region's nucleotide sequence