Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02309 and OHPLBJKB_02310 are separated by 102 nucleotides OHPLBJKB_02310 and OHPLBJKB_02311 are separated by 81 nucleotides OHPLBJKB_02311 and OHPLBJKB_02312 overlap by 19 nucleotides OHPLBJKB_02312 and OHPLBJKB_02313 are separated by 100 nucleotides
OHPLBJKB_02309: OHPLBJKB_02309 - hypothetical protein, at 2,408,204 to 2,414,059
_02309
OHPLBJKB_02310: OHPLBJKB_02310 - hypothetical protein, at 2,414,162 to 2,414,308
_02310
OHPLBJKB_02311: OHPLBJKB_02311 - Carnitine operon protein CaiE, at 2,414,390 to 2,414,980
_02311
OHPLBJKB_02312: OHPLBJKB_02312 - Transcriptional repressor PaaX, at 2,414,962 to 2,415,912
_02312
OHPLBJKB_02313: OHPLBJKB_02313 - Phenylacetate-coenzyme A ligase, at 2,416,013 to 2,417,326
_02313
Position (kb)
2414
2415
2416 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2413.979 kb on + strand at 2414.021 kb on + strand at 2414.022 kb on - strand at 2414.022 kb on - strand at 2414.022 kb on - strand at 2414.062 kb on + strand at 2414.082 kb on - strand at 2414.245 kb on - strand, within OHPLBJKB_02310 at 2414.483 kb on - strand, within OHPLBJKB_02311 at 2414.505 kb on + strand, within OHPLBJKB_02311 at 2414.515 kb on + strand, within OHPLBJKB_02311 at 2414.516 kb on - strand, within OHPLBJKB_02311 at 2414.549 kb on - strand, within OHPLBJKB_02311 at 2414.589 kb on + strand, within OHPLBJKB_02311 at 2414.593 kb on + strand, within OHPLBJKB_02311 at 2414.594 kb on - strand, within OHPLBJKB_02311 at 2414.694 kb on - strand, within OHPLBJKB_02311 at 2414.734 kb on + strand, within OHPLBJKB_02311 at 2414.744 kb on - strand, within OHPLBJKB_02311 at 2414.744 kb on - strand, within OHPLBJKB_02311 at 2414.801 kb on - strand, within OHPLBJKB_02311 at 2414.874 kb on + strand, within OHPLBJKB_02311 at 2414.894 kb on - strand, within OHPLBJKB_02311 at 2414.963 kb on + strand at 2414.963 kb on + strand at 2414.963 kb on + strand at 2414.964 kb on - strand at 2414.964 kb on - strand at 2415.086 kb on - strand, within OHPLBJKB_02312 at 2415.110 kb on + strand, within OHPLBJKB_02312 at 2415.120 kb on + strand, within OHPLBJKB_02312 at 2415.121 kb on - strand, within OHPLBJKB_02312 at 2415.121 kb on - strand, within OHPLBJKB_02312 at 2415.121 kb on - strand, within OHPLBJKB_02312 at 2415.220 kb on + strand, within OHPLBJKB_02312 at 2415.274 kb on + strand, within OHPLBJKB_02312 at 2415.317 kb on + strand, within OHPLBJKB_02312 at 2415.317 kb on + strand, within OHPLBJKB_02312 at 2415.318 kb on - strand, within OHPLBJKB_02312 at 2415.338 kb on - strand, within OHPLBJKB_02312 at 2415.338 kb on - strand, within OHPLBJKB_02312 at 2415.355 kb on + strand, within OHPLBJKB_02312 at 2415.356 kb on - strand, within OHPLBJKB_02312 at 2415.356 kb on - strand, within OHPLBJKB_02312 at 2415.454 kb on + strand, within OHPLBJKB_02312 at 2415.454 kb on + strand, within OHPLBJKB_02312 at 2415.454 kb on + strand, within OHPLBJKB_02312 at 2415.455 kb on - strand, within OHPLBJKB_02312 at 2415.455 kb on - strand, within OHPLBJKB_02312 at 2415.455 kb on - strand, within OHPLBJKB_02312 at 2415.455 kb on - strand, within OHPLBJKB_02312 at 2415.560 kb on - strand, within OHPLBJKB_02312 at 2415.589 kb on - strand, within OHPLBJKB_02312 at 2415.717 kb on + strand, within OHPLBJKB_02312 at 2415.717 kb on + strand, within OHPLBJKB_02312 at 2415.718 kb on - strand, within OHPLBJKB_02312 at 2415.720 kb on + strand, within OHPLBJKB_02312 at 2415.790 kb on - strand, within OHPLBJKB_02312 at 2415.790 kb on - strand, within OHPLBJKB_02312 at 2415.877 kb on + strand at 2415.877 kb on + strand at 2415.898 kb on - strand at 2415.898 kb on - strand at 2415.907 kb on - strand at 2415.930 kb on + strand at 2415.930 kb on + strand at 2415.953 kb on - strand at 2416.028 kb on - strand at 2416.088 kb on - strand at 2416.265 kb on + strand, within OHPLBJKB_02313 at 2416.464 kb on - strand, within OHPLBJKB_02313 at 2416.528 kb on - strand, within OHPLBJKB_02313 at 2416.562 kb on - strand, within OHPLBJKB_02313 at 2416.614 kb on + strand, within OHPLBJKB_02313 at 2416.618 kb on + strand, within OHPLBJKB_02313 at 2416.619 kb on - strand, within OHPLBJKB_02313 at 2416.619 kb on - strand, within OHPLBJKB_02313 at 2416.767 kb on + strand, within OHPLBJKB_02313 at 2416.767 kb on + strand, within OHPLBJKB_02313 at 2416.768 kb on - strand, within OHPLBJKB_02313 at 2416.790 kb on - strand, within OHPLBJKB_02313 at 2416.790 kb on - strand, within OHPLBJKB_02313 at 2416.790 kb on - strand, within OHPLBJKB_02313 at 2416.881 kb on + strand, within OHPLBJKB_02313
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 2,413,979 + -0.9 2,414,021 + +0.2 2,414,022 - -0.0 2,414,022 - -0.8 2,414,022 - +1.2 2,414,062 + -0.4 2,414,082 - -0.5 2,414,245 - OHPLBJKB_02310 0.56 +3.1 2,414,483 - OHPLBJKB_02311 0.16 -0.3 2,414,505 + OHPLBJKB_02311 0.19 -0.3 2,414,515 + OHPLBJKB_02311 0.21 -0.4 2,414,516 - OHPLBJKB_02311 0.21 -1.3 2,414,549 - OHPLBJKB_02311 0.27 +0.1 2,414,589 + OHPLBJKB_02311 0.34 +0.5 2,414,593 + OHPLBJKB_02311 0.34 -0.2 2,414,594 - OHPLBJKB_02311 0.35 -0.4 2,414,694 - OHPLBJKB_02311 0.51 -1.4 2,414,734 + OHPLBJKB_02311 0.58 -1.1 2,414,744 - OHPLBJKB_02311 0.60 -1.5 2,414,744 - OHPLBJKB_02311 0.60 -1.3 2,414,801 - OHPLBJKB_02311 0.70 -0.1 2,414,874 + OHPLBJKB_02311 0.82 -0.6 2,414,894 - OHPLBJKB_02311 0.85 -0.6 2,414,963 + -0.1 2,414,963 + -0.5 2,414,963 + +2.2 2,414,964 - +1.8 2,414,964 - -0.5 2,415,086 - OHPLBJKB_02312 0.13 +0.5 2,415,110 + OHPLBJKB_02312 0.16 -0.3 2,415,120 + OHPLBJKB_02312 0.17 +0.3 2,415,121 - OHPLBJKB_02312 0.17 +0.5 2,415,121 - OHPLBJKB_02312 0.17 -1.4 2,415,121 - OHPLBJKB_02312 0.17 -0.2 2,415,220 + OHPLBJKB_02312 0.27 +0.0 2,415,274 + OHPLBJKB_02312 0.33 +0.5 2,415,317 + OHPLBJKB_02312 0.37 -0.7 2,415,317 + OHPLBJKB_02312 0.37 +1.5 2,415,318 - OHPLBJKB_02312 0.37 -0.7 2,415,338 - OHPLBJKB_02312 0.40 +2.0 2,415,338 - OHPLBJKB_02312 0.40 -0.7 2,415,355 + OHPLBJKB_02312 0.41 +0.5 2,415,356 - OHPLBJKB_02312 0.41 -0.1 2,415,356 - OHPLBJKB_02312 0.41 +0.2 2,415,454 + OHPLBJKB_02312 0.52 +1.7 2,415,454 + OHPLBJKB_02312 0.52 +0.5 2,415,454 + OHPLBJKB_02312 0.52 +0.5 2,415,455 - OHPLBJKB_02312 0.52 +0.3 2,415,455 - OHPLBJKB_02312 0.52 -0.2 2,415,455 - OHPLBJKB_02312 0.52 -1.1 2,415,455 - OHPLBJKB_02312 0.52 +2.1 2,415,560 - OHPLBJKB_02312 0.63 +0.9 2,415,589 - OHPLBJKB_02312 0.66 -0.4 2,415,717 + OHPLBJKB_02312 0.79 -0.6 2,415,717 + OHPLBJKB_02312 0.79 +0.6 2,415,718 - OHPLBJKB_02312 0.79 -0.5 2,415,720 + OHPLBJKB_02312 0.80 +0.5 2,415,790 - OHPLBJKB_02312 0.87 +0.1 2,415,790 - OHPLBJKB_02312 0.87 -0.2 2,415,877 + -0.5 2,415,877 + +0.4 2,415,898 - -0.8 2,415,898 - +1.2 2,415,907 - +0.7 2,415,930 + -1.5 2,415,930 + +1.5 2,415,953 - -0.0 2,416,028 - +0.2 2,416,088 - -0.5 2,416,265 + OHPLBJKB_02313 0.19 -1.3 2,416,464 - OHPLBJKB_02313 0.34 +0.5 2,416,528 - OHPLBJKB_02313 0.39 -1.6 2,416,562 - OHPLBJKB_02313 0.42 -0.1 2,416,614 + OHPLBJKB_02313 0.46 +1.2 2,416,618 + OHPLBJKB_02313 0.46 -0.3 2,416,619 - OHPLBJKB_02313 0.46 +0.9 2,416,619 - OHPLBJKB_02313 0.46 -0.1 2,416,767 + OHPLBJKB_02313 0.57 +0.0 2,416,767 + OHPLBJKB_02313 0.57 +0.1 2,416,768 - OHPLBJKB_02313 0.57 +2.0 2,416,790 - OHPLBJKB_02313 0.59 -0.9 2,416,790 - OHPLBJKB_02313 0.59 -0.4 2,416,790 - OHPLBJKB_02313 0.59 -2.6 2,416,881 + OHPLBJKB_02313 0.66 +0.1
Or see this region's nucleotide sequence