Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02094 and OHPLBJKB_02095 are separated by 3 nucleotides OHPLBJKB_02095 and OHPLBJKB_02096 are separated by 3 nucleotides OHPLBJKB_02096 and OHPLBJKB_02097 are separated by 0 nucleotides
OHPLBJKB_02094: OHPLBJKB_02094 - Electron transport complex subunit RsxE, at 2,169,168 to 2,169,863
_02094
OHPLBJKB_02095: OHPLBJKB_02095 - Electron transport complex subunit RsxG, at 2,169,867 to 2,170,487
_02095
OHPLBJKB_02096: OHPLBJKB_02096 - Electron transport complex subunit RsxD, at 2,170,491 to 2,171,549
_02096
OHPLBJKB_02097: OHPLBJKB_02097 - Electron transport complex subunit RsxC, at 2,171,550 to 2,173,772
_02097
Position (kb)
2170
2171
2172 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2169.536 kb on + strand, within OHPLBJKB_02094 at 2169.537 kb on - strand, within OHPLBJKB_02094 at 2169.542 kb on + strand, within OHPLBJKB_02094 at 2169.755 kb on + strand, within OHPLBJKB_02094 at 2169.919 kb on + strand at 2170.253 kb on - strand, within OHPLBJKB_02095 at 2170.271 kb on + strand, within OHPLBJKB_02095 at 2170.272 kb on - strand, within OHPLBJKB_02095 at 2170.272 kb on - strand, within OHPLBJKB_02095 at 2170.276 kb on - strand, within OHPLBJKB_02095 at 2170.297 kb on + strand, within OHPLBJKB_02095 at 2170.297 kb on + strand, within OHPLBJKB_02095 at 2170.324 kb on + strand, within OHPLBJKB_02095 at 2170.325 kb on - strand, within OHPLBJKB_02095 at 2170.354 kb on - strand, within OHPLBJKB_02095 at 2170.354 kb on - strand, within OHPLBJKB_02095 at 2170.423 kb on - strand, within OHPLBJKB_02095 at 2170.457 kb on + strand at 2170.458 kb on - strand at 2170.458 kb on - strand at 2170.458 kb on - strand at 2170.458 kb on - strand at 2170.531 kb on + strand at 2170.531 kb on + strand at 2170.532 kb on - strand at 2170.621 kb on - strand, within OHPLBJKB_02096 at 2170.624 kb on - strand, within OHPLBJKB_02096 at 2170.624 kb on - strand, within OHPLBJKB_02096 at 2170.667 kb on + strand, within OHPLBJKB_02096 at 2170.695 kb on - strand, within OHPLBJKB_02096 at 2170.804 kb on - strand, within OHPLBJKB_02096 at 2170.846 kb on - strand, within OHPLBJKB_02096 at 2170.911 kb on - strand, within OHPLBJKB_02096 at 2170.934 kb on + strand, within OHPLBJKB_02096 at 2170.973 kb on + strand, within OHPLBJKB_02096 at 2170.979 kb on + strand, within OHPLBJKB_02096 at 2170.980 kb on - strand, within OHPLBJKB_02096 at 2171.066 kb on + strand, within OHPLBJKB_02096 at 2171.157 kb on + strand, within OHPLBJKB_02096 at 2171.158 kb on - strand, within OHPLBJKB_02096 at 2171.167 kb on + strand, within OHPLBJKB_02096 at 2171.167 kb on + strand, within OHPLBJKB_02096 at 2171.167 kb on + strand, within OHPLBJKB_02096 at 2171.167 kb on + strand, within OHPLBJKB_02096 at 2171.212 kb on + strand, within OHPLBJKB_02096 at 2171.213 kb on - strand, within OHPLBJKB_02096 at 2171.222 kb on + strand, within OHPLBJKB_02096 at 2171.286 kb on - strand, within OHPLBJKB_02096 at 2171.286 kb on - strand, within OHPLBJKB_02096 at 2171.286 kb on - strand, within OHPLBJKB_02096 at 2171.286 kb on - strand, within OHPLBJKB_02096 at 2171.302 kb on - strand, within OHPLBJKB_02096 at 2171.302 kb on - strand, within OHPLBJKB_02096 at 2171.302 kb on - strand, within OHPLBJKB_02096 at 2171.302 kb on - strand, within OHPLBJKB_02096 at 2171.324 kb on + strand, within OHPLBJKB_02096 at 2171.358 kb on + strand, within OHPLBJKB_02096 at 2171.358 kb on + strand, within OHPLBJKB_02096 at 2171.489 kb on + strand at 2171.490 kb on - strand at 2171.519 kb on + strand at 2171.519 kb on + strand at 2171.520 kb on - strand at 2171.522 kb on - strand at 2171.531 kb on + strand at 2171.531 kb on + strand at 2171.531 kb on + strand at 2171.532 kb on - strand at 2171.532 kb on - strand at 2171.532 kb on - strand at 2171.552 kb on - strand at 2171.552 kb on - strand at 2171.563 kb on - strand at 2172.087 kb on - strand, within OHPLBJKB_02097 at 2172.108 kb on - strand, within OHPLBJKB_02097 at 2172.137 kb on + strand, within OHPLBJKB_02097 at 2172.200 kb on + strand, within OHPLBJKB_02097 at 2172.234 kb on - strand, within OHPLBJKB_02097 at 2172.234 kb on - strand, within OHPLBJKB_02097 at 2172.242 kb on + strand, within OHPLBJKB_02097 at 2172.243 kb on - strand, within OHPLBJKB_02097 at 2172.251 kb on + strand, within OHPLBJKB_02097 at 2172.338 kb on + strand, within OHPLBJKB_02097 at 2172.338 kb on + strand, within OHPLBJKB_02097 at 2172.338 kb on + strand, within OHPLBJKB_02097 at 2172.339 kb on - strand, within OHPLBJKB_02097 at 2172.470 kb on - strand, within OHPLBJKB_02097 at 2172.485 kb on + strand, within OHPLBJKB_02097 at 2172.486 kb on - strand, within OHPLBJKB_02097 at 2172.549 kb on - strand, within OHPLBJKB_02097 at 2172.549 kb on - strand, within OHPLBJKB_02097
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 2,169,536 + OHPLBJKB_02094 0.53 -0.7 2,169,537 - OHPLBJKB_02094 0.53 -0.8 2,169,542 + OHPLBJKB_02094 0.54 +1.5 2,169,755 + OHPLBJKB_02094 0.84 +0.1 2,169,919 + +1.5 2,170,253 - OHPLBJKB_02095 0.62 -2.3 2,170,271 + OHPLBJKB_02095 0.65 -0.9 2,170,272 - OHPLBJKB_02095 0.65 -2.7 2,170,272 - OHPLBJKB_02095 0.65 -0.4 2,170,276 - OHPLBJKB_02095 0.66 +1.7 2,170,297 + OHPLBJKB_02095 0.69 +0.2 2,170,297 + OHPLBJKB_02095 0.69 -2.0 2,170,324 + OHPLBJKB_02095 0.74 -0.5 2,170,325 - OHPLBJKB_02095 0.74 +0.1 2,170,354 - OHPLBJKB_02095 0.78 +0.5 2,170,354 - OHPLBJKB_02095 0.78 +0.9 2,170,423 - OHPLBJKB_02095 0.90 -1.1 2,170,457 + -0.5 2,170,458 - +1.1 2,170,458 - +1.5 2,170,458 - -0.5 2,170,458 - -0.5 2,170,531 + -1.3 2,170,531 + -1.8 2,170,532 - +0.2 2,170,621 - OHPLBJKB_02096 0.12 -0.4 2,170,624 - OHPLBJKB_02096 0.13 -0.8 2,170,624 - OHPLBJKB_02096 0.13 -1.1 2,170,667 + OHPLBJKB_02096 0.17 -1.3 2,170,695 - OHPLBJKB_02096 0.19 -1.8 2,170,804 - OHPLBJKB_02096 0.30 +0.1 2,170,846 - OHPLBJKB_02096 0.34 +0.1 2,170,911 - OHPLBJKB_02096 0.40 -1.3 2,170,934 + OHPLBJKB_02096 0.42 -0.8 2,170,973 + OHPLBJKB_02096 0.46 +0.5 2,170,979 + OHPLBJKB_02096 0.46 -0.1 2,170,980 - OHPLBJKB_02096 0.46 -1.3 2,171,066 + OHPLBJKB_02096 0.54 +1.1 2,171,157 + OHPLBJKB_02096 0.63 +0.2 2,171,158 - OHPLBJKB_02096 0.63 +0.5 2,171,167 + OHPLBJKB_02096 0.64 +0.3 2,171,167 + OHPLBJKB_02096 0.64 +0.2 2,171,167 + OHPLBJKB_02096 0.64 -0.5 2,171,167 + OHPLBJKB_02096 0.64 +0.9 2,171,212 + OHPLBJKB_02096 0.68 -0.8 2,171,213 - OHPLBJKB_02096 0.68 +0.4 2,171,222 + OHPLBJKB_02096 0.69 +0.1 2,171,286 - OHPLBJKB_02096 0.75 -0.3 2,171,286 - OHPLBJKB_02096 0.75 -0.5 2,171,286 - OHPLBJKB_02096 0.75 -0.7 2,171,286 - OHPLBJKB_02096 0.75 -0.6 2,171,302 - OHPLBJKB_02096 0.77 +1.9 2,171,302 - OHPLBJKB_02096 0.77 -0.3 2,171,302 - OHPLBJKB_02096 0.77 -0.5 2,171,302 - OHPLBJKB_02096 0.77 -0.1 2,171,324 + OHPLBJKB_02096 0.79 -1.7 2,171,358 + OHPLBJKB_02096 0.82 +1.5 2,171,358 + OHPLBJKB_02096 0.82 -0.8 2,171,489 + -0.8 2,171,490 - +0.1 2,171,519 + +0.5 2,171,519 + +0.3 2,171,520 - +0.7 2,171,522 - -0.5 2,171,531 + +1.2 2,171,531 + -2.5 2,171,531 + +0.9 2,171,532 - -1.7 2,171,532 - -0.3 2,171,532 - +1.1 2,171,552 - +1.5 2,171,552 - -0.5 2,171,563 - +0.2 2,172,087 - OHPLBJKB_02097 0.24 +0.1 2,172,108 - OHPLBJKB_02097 0.25 +0.5 2,172,137 + OHPLBJKB_02097 0.26 +0.2 2,172,200 + OHPLBJKB_02097 0.29 +1.5 2,172,234 - OHPLBJKB_02097 0.31 -1.7 2,172,234 - OHPLBJKB_02097 0.31 -1.8 2,172,242 + OHPLBJKB_02097 0.31 +0.5 2,172,243 - OHPLBJKB_02097 0.31 -2.0 2,172,251 + OHPLBJKB_02097 0.32 -0.1 2,172,338 + OHPLBJKB_02097 0.35 +0.2 2,172,338 + OHPLBJKB_02097 0.35 -0.8 2,172,338 + OHPLBJKB_02097 0.35 -0.1 2,172,339 - OHPLBJKB_02097 0.35 -0.5 2,172,470 - OHPLBJKB_02097 0.41 -1.8 2,172,485 + OHPLBJKB_02097 0.42 -0.5 2,172,486 - OHPLBJKB_02097 0.42 +0.2 2,172,549 - OHPLBJKB_02097 0.45 +0.5 2,172,549 - OHPLBJKB_02097 0.45 -1.8
Or see this region's nucleotide sequence