Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01817

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01816 and OHPLBJKB_01817 are separated by 56 nucleotidesOHPLBJKB_01817 and OHPLBJKB_01818 are separated by 151 nucleotidesOHPLBJKB_01818 and OHPLBJKB_01819 are separated by 54 nucleotidesOHPLBJKB_01819 and OHPLBJKB_01820 are separated by 12 nucleotidesOHPLBJKB_01820 and OHPLBJKB_01821 are separated by 195 nucleotides OHPLBJKB_01816: OHPLBJKB_01816 - UvrABC system protein C, at 1,896,293 to 1,898,125 _01816 OHPLBJKB_01817: OHPLBJKB_01817 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,898,182 to 1,898,730 _01817 OHPLBJKB_01818: OHPLBJKB_01818 - tRNA-Gly, at 1,898,882 to 1,898,957 _01818 OHPLBJKB_01819: OHPLBJKB_01819 - tRNA-Cys, at 1,899,012 to 1,899,085 _01819 OHPLBJKB_01820: OHPLBJKB_01820 - tRNA-Leu, at 1,899,098 to 1,899,184 _01820 OHPLBJKB_01821: OHPLBJKB_01821 - hypothetical protein, at 1,899,380 to 1,900,045 _01821 Position (kb) 1898 1899Strain fitness (log2 ratio) -2 -1 0 1 2at 1897.202 kb on + strand, within OHPLBJKB_01816at 1897.206 kb on + strand, within OHPLBJKB_01816at 1897.206 kb on + strand, within OHPLBJKB_01816at 1897.206 kb on + strand, within OHPLBJKB_01816at 1897.207 kb on - strand, within OHPLBJKB_01816at 1897.231 kb on - strand, within OHPLBJKB_01816at 1897.267 kb on + strand, within OHPLBJKB_01816at 1897.316 kb on - strand, within OHPLBJKB_01816at 1897.353 kb on - strand, within OHPLBJKB_01816at 1897.415 kb on - strand, within OHPLBJKB_01816at 1897.433 kb on - strand, within OHPLBJKB_01816at 1897.433 kb on - strand, within OHPLBJKB_01816at 1897.498 kb on + strand, within OHPLBJKB_01816at 1897.544 kb on - strand, within OHPLBJKB_01816at 1897.575 kb on - strand, within OHPLBJKB_01816at 1897.575 kb on - strand, within OHPLBJKB_01816at 1897.576 kb on + strand, within OHPLBJKB_01816at 1897.663 kb on + strand, within OHPLBJKB_01816at 1897.663 kb on + strand, within OHPLBJKB_01816at 1897.664 kb on - strand, within OHPLBJKB_01816at 1897.680 kb on + strand, within OHPLBJKB_01816at 1897.680 kb on + strand, within OHPLBJKB_01816at 1897.681 kb on - strand, within OHPLBJKB_01816at 1897.685 kb on - strand, within OHPLBJKB_01816at 1897.753 kb on + strand, within OHPLBJKB_01816at 1897.770 kb on + strand, within OHPLBJKB_01816at 1897.798 kb on + strand, within OHPLBJKB_01816at 1898.015 kb on + strandat 1898.016 kb on - strandat 1898.016 kb on - strandat 1898.016 kb on - strandat 1898.016 kb on - strandat 1898.017 kb on + strandat 1898.037 kb on + strandat 1898.037 kb on + strandat 1898.148 kb on + strandat 1899.194 kb on + strandat 1899.315 kb on + strandat 1899.338 kb on + strandat 1899.338 kb on + strandat 1899.338 kb on + strandat 1899.338 kb on + strandat 1899.338 kb on + strandat 1899.338 kb on + strandat 1899.338 kb on + strandat 1899.338 kb on + strandat 1899.338 kb on + strandat 1899.338 kb on + strandat 1899.338 kb on + strandat 1899.339 kb on - strandat 1899.339 kb on - strandat 1899.339 kb on - strandat 1899.339 kb on - strandat 1899.339 kb on - strandat 1899.339 kb on - strandat 1899.344 kb on - strandat 1899.344 kb on - strandat 1899.440 kb on + strandat 1899.563 kb on + strand, within OHPLBJKB_01821at 1899.564 kb on - strand, within OHPLBJKB_01821at 1899.564 kb on - strand, within OHPLBJKB_01821at 1899.564 kb on - strand, within OHPLBJKB_01821at 1899.604 kb on + strand, within OHPLBJKB_01821at 1899.625 kb on + strand, within OHPLBJKB_01821at 1899.626 kb on - strand, within OHPLBJKB_01821

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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1,897,202 + OHPLBJKB_01816 0.50 -1.5
1,897,206 + OHPLBJKB_01816 0.50 +1.8
1,897,206 + OHPLBJKB_01816 0.50 +0.4
1,897,206 + OHPLBJKB_01816 0.50 -0.1
1,897,207 - OHPLBJKB_01816 0.50 -0.5
1,897,231 - OHPLBJKB_01816 0.51 +0.7
1,897,267 + OHPLBJKB_01816 0.53 -0.7
1,897,316 - OHPLBJKB_01816 0.56 +1.2
1,897,353 - OHPLBJKB_01816 0.58 -0.7
1,897,415 - OHPLBJKB_01816 0.61 -0.1
1,897,433 - OHPLBJKB_01816 0.62 +0.6
1,897,433 - OHPLBJKB_01816 0.62 -0.5
1,897,498 + OHPLBJKB_01816 0.66 -1.5
1,897,544 - OHPLBJKB_01816 0.68 +0.5
1,897,575 - OHPLBJKB_01816 0.70 -0.6
1,897,575 - OHPLBJKB_01816 0.70 -0.5
1,897,576 + OHPLBJKB_01816 0.70 -0.2
1,897,663 + OHPLBJKB_01816 0.75 +0.9
1,897,663 + OHPLBJKB_01816 0.75 +1.5
1,897,664 - OHPLBJKB_01816 0.75 -0.9
1,897,680 + OHPLBJKB_01816 0.76 -0.3
1,897,680 + OHPLBJKB_01816 0.76 -0.3
1,897,681 - OHPLBJKB_01816 0.76 +0.5
1,897,685 - OHPLBJKB_01816 0.76 -0.7
1,897,753 + OHPLBJKB_01816 0.80 +0.2
1,897,770 + OHPLBJKB_01816 0.81 +0.2
1,897,798 + OHPLBJKB_01816 0.82 -0.9
1,898,015 + +0.7
1,898,016 - -0.4
1,898,016 - +0.9
1,898,016 - +0.1
1,898,016 - -1.7
1,898,017 + -0.5
1,898,037 + -0.7
1,898,037 + +0.2
1,898,148 + +0.9
1,899,194 + +0.6
1,899,315 + -0.3
1,899,338 + +0.3
1,899,338 + -0.3
1,899,338 + +0.8
1,899,338 + -1.3
1,899,338 + +0.6
1,899,338 + -0.2
1,899,338 + +0.5
1,899,338 + +2.5
1,899,338 + +0.7
1,899,338 + -0.2
1,899,338 + -0.5
1,899,339 - -0.6
1,899,339 - +0.1
1,899,339 - -0.2
1,899,339 - +1.1
1,899,339 - +0.1
1,899,339 - +1.5
1,899,344 - -0.6
1,899,344 - -0.3
1,899,440 + -2.1
1,899,563 + OHPLBJKB_01821 0.27 +0.7
1,899,564 - OHPLBJKB_01821 0.28 -0.9
1,899,564 - OHPLBJKB_01821 0.28 +1.0
1,899,564 - OHPLBJKB_01821 0.28 +0.2
1,899,604 + OHPLBJKB_01821 0.34 -0.5
1,899,625 + OHPLBJKB_01821 0.37 -0.8
1,899,626 - OHPLBJKB_01821 0.37 +0.6

Or see this region's nucleotide sequence