Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_01176 and OHPLBJKB_01177 are separated by 118 nucleotides OHPLBJKB_01177 and OHPLBJKB_01178 are separated by 360 nucleotides
OHPLBJKB_01176: OHPLBJKB_01176 - Inositol-1-monophosphatase, at 1,208,824 to 1,209,627
_01176
OHPLBJKB_01177: OHPLBJKB_01177 - 'tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ' transl_table=11, at 1,209,746 to 1,210,486
_01177
OHPLBJKB_01178: OHPLBJKB_01178 - HTH-type transcriptional regulator IscR, at 1,210,847 to 1,211,335
_01178
Position (kb)
1209
1210
1211 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1208.749 kb on + strand at 1208.765 kb on + strand at 1208.766 kb on - strand at 1209.705 kb on + strand at 1209.757 kb on + strand at 1209.964 kb on + strand, within OHPLBJKB_01177 at 1209.965 kb on - strand, within OHPLBJKB_01177 at 1210.163 kb on + strand, within OHPLBJKB_01177 at 1210.205 kb on + strand, within OHPLBJKB_01177 at 1210.205 kb on + strand, within OHPLBJKB_01177 at 1210.206 kb on - strand, within OHPLBJKB_01177 at 1210.304 kb on + strand, within OHPLBJKB_01177 at 1210.375 kb on + strand, within OHPLBJKB_01177 at 1210.375 kb on + strand, within OHPLBJKB_01177 at 1210.376 kb on - strand, within OHPLBJKB_01177 at 1210.465 kb on + strand at 1210.472 kb on - strand at 1210.472 kb on - strand at 1210.520 kb on + strand at 1210.521 kb on - strand at 1210.536 kb on + strand at 1210.537 kb on - strand at 1210.547 kb on - strand at 1210.611 kb on + strand at 1210.621 kb on - strand at 1210.621 kb on - strand at 1210.627 kb on + strand at 1210.677 kb on - strand at 1210.724 kb on - strand at 1210.800 kb on + strand at 1210.861 kb on + strand at 1210.871 kb on + strand at 1210.967 kb on + strand, within OHPLBJKB_01178 at 1211.019 kb on + strand, within OHPLBJKB_01178 at 1211.019 kb on + strand, within OHPLBJKB_01178 at 1211.082 kb on + strand, within OHPLBJKB_01178 at 1211.086 kb on + strand, within OHPLBJKB_01178 at 1211.086 kb on + strand, within OHPLBJKB_01178 at 1211.106 kb on + strand, within OHPLBJKB_01178 at 1211.106 kb on + strand, within OHPLBJKB_01178 at 1211.106 kb on + strand, within OHPLBJKB_01178 at 1211.218 kb on + strand, within OHPLBJKB_01178 at 1211.218 kb on + strand, within OHPLBJKB_01178 at 1211.218 kb on + strand, within OHPLBJKB_01178 at 1211.218 kb on + strand, within OHPLBJKB_01178 at 1211.218 kb on + strand, within OHPLBJKB_01178 at 1211.218 kb on + strand, within OHPLBJKB_01178 at 1211.218 kb on + strand, within OHPLBJKB_01178 at 1211.218 kb on + strand, within OHPLBJKB_01178 at 1211.218 kb on + strand, within OHPLBJKB_01178 at 1211.301 kb on + strand at 1211.301 kb on + strand at 1211.320 kb on + strand at 1211.320 kb on + strand at 1211.378 kb on + strand at 1211.378 kb on + strand at 1211.395 kb on + strand at 1211.395 kb on + strand at 1211.395 kb on + strand at 1211.395 kb on + strand at 1211.395 kb on + strand at 1211.395 kb on + strand at 1211.395 kb on + strand at 1211.395 kb on + strand at 1211.395 kb on + strand at 1211.399 kb on + strand at 1211.399 kb on + strand at 1211.399 kb on + strand at 1211.399 kb on + strand at 1211.399 kb on + strand at 1211.403 kb on + strand at 1211.403 kb on + strand at 1211.403 kb on + strand at 1211.403 kb on + strand at 1211.403 kb on + strand at 1211.403 kb on + strand at 1211.459 kb on + strand at 1211.473 kb on + strand at 1211.473 kb on + strand at 1211.473 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 1,208,749 + -0.3 1,208,765 + -1.2 1,208,766 - -0.1 1,209,705 + -0.5 1,209,757 + -0.7 1,209,964 + OHPLBJKB_01177 0.29 +0.8 1,209,965 - OHPLBJKB_01177 0.30 -2.2 1,210,163 + OHPLBJKB_01177 0.56 -0.8 1,210,205 + OHPLBJKB_01177 0.62 +0.6 1,210,205 + OHPLBJKB_01177 0.62 +0.1 1,210,206 - OHPLBJKB_01177 0.62 +1.1 1,210,304 + OHPLBJKB_01177 0.75 +0.1 1,210,375 + OHPLBJKB_01177 0.85 -1.4 1,210,375 + OHPLBJKB_01177 0.85 +0.3 1,210,376 - OHPLBJKB_01177 0.85 -0.5 1,210,465 + -0.1 1,210,472 - -1.9 1,210,472 - -0.5 1,210,520 + +0.4 1,210,521 - +0.2 1,210,536 + +0.4 1,210,537 - -2.0 1,210,547 - +0.2 1,210,611 + -0.7 1,210,621 - -0.5 1,210,621 - -0.3 1,210,627 + -0.2 1,210,677 - -1.9 1,210,724 - +0.0 1,210,800 + +0.1 1,210,861 + +0.1 1,210,871 + +2.7 1,210,967 + OHPLBJKB_01178 0.25 +0.7 1,211,019 + OHPLBJKB_01178 0.35 +0.4 1,211,019 + OHPLBJKB_01178 0.35 +0.1 1,211,082 + OHPLBJKB_01178 0.48 +0.5 1,211,086 + OHPLBJKB_01178 0.49 +0.6 1,211,086 + OHPLBJKB_01178 0.49 +1.4 1,211,106 + OHPLBJKB_01178 0.53 +1.1 1,211,106 + OHPLBJKB_01178 0.53 +0.4 1,211,106 + OHPLBJKB_01178 0.53 +1.6 1,211,218 + OHPLBJKB_01178 0.76 +0.9 1,211,218 + OHPLBJKB_01178 0.76 +1.3 1,211,218 + OHPLBJKB_01178 0.76 +0.2 1,211,218 + OHPLBJKB_01178 0.76 +0.3 1,211,218 + OHPLBJKB_01178 0.76 +0.1 1,211,218 + OHPLBJKB_01178 0.76 +1.1 1,211,218 + OHPLBJKB_01178 0.76 +1.0 1,211,218 + OHPLBJKB_01178 0.76 +0.8 1,211,218 + OHPLBJKB_01178 0.76 +0.4 1,211,301 + +0.1 1,211,301 + -0.0 1,211,320 + -0.8 1,211,320 + +0.2 1,211,378 + -0.9 1,211,378 + -2.0 1,211,395 + +0.2 1,211,395 + -1.6 1,211,395 + -0.1 1,211,395 + -1.1 1,211,395 + +0.5 1,211,395 + -0.2 1,211,395 + -0.7 1,211,395 + -0.3 1,211,395 + +1.0 1,211,399 + +0.1 1,211,399 + -0.5 1,211,399 + -0.8 1,211,399 + -0.1 1,211,399 + -0.3 1,211,403 + -1.8 1,211,403 + -0.2 1,211,403 + -0.7 1,211,403 + +1.5 1,211,403 + -0.9 1,211,403 + -0.1 1,211,459 + -0.2 1,211,473 + +0.3 1,211,473 + -0.8 1,211,473 + +1.2
Or see this region's nucleotide sequence