Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00710

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00707 and OHPLBJKB_00708 overlap by 8 nucleotidesOHPLBJKB_00708 and OHPLBJKB_00709 are separated by 12 nucleotidesOHPLBJKB_00709 and OHPLBJKB_00710 are separated by 122 nucleotidesOHPLBJKB_00710 and OHPLBJKB_00711 are separated by 204 nucleotides OHPLBJKB_00707: OHPLBJKB_00707 - Hydrogenase-2 operon protein HybE, at 725,272 to 725,760 _00707 OHPLBJKB_00708: OHPLBJKB_00708 - Hydrogenase maturation factor HybF, at 725,753 to 726,094 _00708 OHPLBJKB_00709: OHPLBJKB_00709 - Hydrogenase maturation factor HybG, at 726,107 to 726,355 _00709 OHPLBJKB_00710: OHPLBJKB_00710 - Disulfide-bond oxidoreductase YghU, at 726,478 to 727,344 _00710 OHPLBJKB_00711: OHPLBJKB_00711 - Bifunctional glutathionylspermidine synthetase/amidase, at 727,549 to 729,408 _00711 Position (kb) 726 727 728Strain fitness (log2 ratio) -2 -1 0 1 2at 725.544 kb on + strand, within OHPLBJKB_00707at 725.544 kb on + strand, within OHPLBJKB_00707at 725.585 kb on - strand, within OHPLBJKB_00707at 725.702 kb on + strand, within OHPLBJKB_00707at 725.702 kb on + strand, within OHPLBJKB_00707at 725.821 kb on + strand, within OHPLBJKB_00708at 725.822 kb on - strand, within OHPLBJKB_00708at 725.937 kb on + strand, within OHPLBJKB_00708at 725.937 kb on + strand, within OHPLBJKB_00708at 725.938 kb on - strand, within OHPLBJKB_00708at 725.938 kb on - strand, within OHPLBJKB_00708at 725.938 kb on - strand, within OHPLBJKB_00708at 725.938 kb on - strand, within OHPLBJKB_00708at 725.938 kb on - strand, within OHPLBJKB_00708at 725.941 kb on + strand, within OHPLBJKB_00708at 725.942 kb on - strand, within OHPLBJKB_00708at 725.942 kb on - strand, within OHPLBJKB_00708at 725.948 kb on + strand, within OHPLBJKB_00708at 726.105 kb on + strandat 726.105 kb on + strandat 726.105 kb on + strandat 726.105 kb on + strandat 726.106 kb on - strandat 726.113 kb on - strandat 726.152 kb on - strand, within OHPLBJKB_00709at 726.152 kb on - strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.178 kb on - strand, within OHPLBJKB_00709at 726.178 kb on - strand, within OHPLBJKB_00709at 726.178 kb on - strand, within OHPLBJKB_00709at 726.178 kb on - strand, within OHPLBJKB_00709at 726.178 kb on - strand, within OHPLBJKB_00709at 726.178 kb on - strand, within OHPLBJKB_00709at 726.185 kb on - strand, within OHPLBJKB_00709at 726.185 kb on - strand, within OHPLBJKB_00709at 726.185 kb on - strand, within OHPLBJKB_00709at 726.238 kb on - strand, within OHPLBJKB_00709at 726.312 kb on + strand, within OHPLBJKB_00709at 726.313 kb on - strand, within OHPLBJKB_00709at 726.313 kb on - strand, within OHPLBJKB_00709at 726.336 kb on - strandat 726.360 kb on + strandat 726.360 kb on + strandat 726.361 kb on - strandat 726.361 kb on - strandat 726.370 kb on - strandat 726.370 kb on - strandat 726.378 kb on + strandat 726.492 kb on + strandat 726.576 kb on + strand, within OHPLBJKB_00710at 726.576 kb on + strand, within OHPLBJKB_00710at 726.608 kb on - strand, within OHPLBJKB_00710at 726.628 kb on + strand, within OHPLBJKB_00710at 726.628 kb on + strand, within OHPLBJKB_00710at 726.628 kb on + strand, within OHPLBJKB_00710at 726.628 kb on + strand, within OHPLBJKB_00710at 726.629 kb on - strand, within OHPLBJKB_00710at 726.629 kb on - strand, within OHPLBJKB_00710at 726.629 kb on - strand, within OHPLBJKB_00710at 726.629 kb on - strand, within OHPLBJKB_00710at 726.629 kb on - strand, within OHPLBJKB_00710at 726.636 kb on + strand, within OHPLBJKB_00710at 726.636 kb on + strand, within OHPLBJKB_00710at 726.636 kb on + strand, within OHPLBJKB_00710at 726.636 kb on + strand, within OHPLBJKB_00710at 726.636 kb on + strand, within OHPLBJKB_00710at 726.636 kb on + strand, within OHPLBJKB_00710at 726.636 kb on + strand, within OHPLBJKB_00710at 726.637 kb on - strand, within OHPLBJKB_00710at 726.638 kb on + strand, within OHPLBJKB_00710at 726.639 kb on - strand, within OHPLBJKB_00710at 726.639 kb on - strand, within OHPLBJKB_00710at 726.639 kb on - strand, within OHPLBJKB_00710at 726.639 kb on - strand, within OHPLBJKB_00710at 726.671 kb on + strand, within OHPLBJKB_00710at 726.671 kb on + strand, within OHPLBJKB_00710at 726.671 kb on + strand, within OHPLBJKB_00710at 726.672 kb on - strand, within OHPLBJKB_00710at 726.672 kb on - strand, within OHPLBJKB_00710at 726.682 kb on + strand, within OHPLBJKB_00710at 726.683 kb on - strand, within OHPLBJKB_00710at 726.683 kb on - strand, within OHPLBJKB_00710at 726.683 kb on - strand, within OHPLBJKB_00710at 726.731 kb on + strand, within OHPLBJKB_00710at 726.732 kb on - strand, within OHPLBJKB_00710at 726.753 kb on + strand, within OHPLBJKB_00710at 726.753 kb on + strand, within OHPLBJKB_00710at 726.753 kb on + strand, within OHPLBJKB_00710at 726.753 kb on + strand, within OHPLBJKB_00710at 726.753 kb on + strand, within OHPLBJKB_00710at 726.754 kb on - strand, within OHPLBJKB_00710at 726.754 kb on - strand, within OHPLBJKB_00710at 726.754 kb on - strand, within OHPLBJKB_00710at 726.754 kb on - strand, within OHPLBJKB_00710at 726.754 kb on - strand, within OHPLBJKB_00710at 726.754 kb on - strand, within OHPLBJKB_00710at 726.807 kb on + strand, within OHPLBJKB_00710at 726.808 kb on - strand, within OHPLBJKB_00710at 726.825 kb on - strand, within OHPLBJKB_00710at 726.836 kb on - strand, within OHPLBJKB_00710at 726.845 kb on + strand, within OHPLBJKB_00710at 726.851 kb on + strand, within OHPLBJKB_00710at 726.851 kb on + strand, within OHPLBJKB_00710at 726.975 kb on - strand, within OHPLBJKB_00710at 727.018 kb on - strand, within OHPLBJKB_00710at 727.023 kb on + strand, within OHPLBJKB_00710at 727.023 kb on + strand, within OHPLBJKB_00710at 727.023 kb on + strand, within OHPLBJKB_00710at 727.024 kb on - strand, within OHPLBJKB_00710at 727.024 kb on - strand, within OHPLBJKB_00710at 727.101 kb on + strand, within OHPLBJKB_00710at 727.121 kb on + strand, within OHPLBJKB_00710at 727.122 kb on - strand, within OHPLBJKB_00710at 727.122 kb on - strand, within OHPLBJKB_00710at 727.122 kb on - strand, within OHPLBJKB_00710at 727.135 kb on - strand, within OHPLBJKB_00710at 727.164 kb on + strand, within OHPLBJKB_00710at 727.164 kb on + strand, within OHPLBJKB_00710at 727.164 kb on + strand, within OHPLBJKB_00710at 727.165 kb on - strand, within OHPLBJKB_00710at 727.273 kb on - strandat 727.299 kb on + strandat 727.328 kb on + strandat 727.328 kb on + strandat 727.328 kb on + strandat 727.328 kb on + strandat 727.329 kb on - strandat 727.329 kb on - strandat 727.332 kb on + strandat 727.332 kb on + strandat 727.332 kb on + strandat 727.332 kb on + strandat 727.332 kb on + strandat 727.332 kb on + strandat 727.332 kb on + strandat 727.332 kb on + strandat 727.333 kb on - strandat 727.333 kb on - strandat 727.333 kb on - strandat 727.333 kb on - strandat 727.333 kb on - strandat 727.345 kb on - strandat 727.366 kb on + strandat 727.367 kb on - strandat 727.382 kb on + strandat 727.382 kb on + strandat 727.382 kb on + strandat 727.382 kb on + strandat 727.383 kb on - strandat 727.383 kb on - strandat 727.383 kb on - strandat 727.383 kb on - strandat 727.383 kb on - strandat 727.383 kb on - strandat 727.399 kb on + strandat 727.399 kb on + strandat 727.449 kb on + strandat 727.449 kb on + strandat 727.449 kb on + strandat 727.449 kb on + strandat 727.450 kb on - strandat 727.450 kb on - strandat 727.450 kb on - strandat 727.450 kb on - strandat 727.450 kb on - strandat 727.492 kb on + strandat 727.493 kb on - strandat 727.530 kb on + strandat 727.530 kb on + strandat 727.530 kb on + strandat 727.530 kb on + strandat 727.531 kb on - strandat 727.531 kb on - strandat 727.531 kb on - strandat 727.531 kb on - strandat 727.531 kb on - strandat 727.536 kb on + strandat 727.542 kb on + strandat 727.592 kb on + strandat 727.624 kb on + strandat 727.625 kb on - strandat 727.660 kb on + strandat 727.687 kb on + strandat 727.687 kb on + strandat 727.687 kb on + strandat 727.688 kb on - strandat 727.688 kb on - strandat 727.688 kb on - strandat 727.688 kb on - strandat 727.688 kb on - strandat 727.688 kb on - strandat 727.702 kb on + strandat 727.703 kb on - strandat 727.704 kb on + strandat 727.704 kb on + strandat 727.705 kb on - strandat 727.902 kb on + strand, within OHPLBJKB_00711at 727.902 kb on + strand, within OHPLBJKB_00711at 727.927 kb on - strand, within OHPLBJKB_00711at 728.068 kb on + strand, within OHPLBJKB_00711at 728.068 kb on + strand, within OHPLBJKB_00711at 728.068 kb on + strand, within OHPLBJKB_00711at 728.071 kb on - strand, within OHPLBJKB_00711at 728.131 kb on - strand, within OHPLBJKB_00711at 728.137 kb on + strand, within OHPLBJKB_00711at 728.137 kb on + strand, within OHPLBJKB_00711at 728.138 kb on - strand, within OHPLBJKB_00711at 728.221 kb on - strand, within OHPLBJKB_00711at 728.257 kb on + strand, within OHPLBJKB_00711at 728.257 kb on + strand, within OHPLBJKB_00711at 728.257 kb on + strand, within OHPLBJKB_00711at 728.302 kb on + strand, within OHPLBJKB_00711at 728.303 kb on - strand, within OHPLBJKB_00711at 728.303 kb on - strand, within OHPLBJKB_00711at 728.303 kb on - strand, within OHPLBJKB_00711at 728.305 kb on + strand, within OHPLBJKB_00711at 728.305 kb on + strand, within OHPLBJKB_00711at 728.305 kb on + strand, within OHPLBJKB_00711at 728.305 kb on + strand, within OHPLBJKB_00711at 728.305 kb on + strand, within OHPLBJKB_00711at 728.306 kb on - strand, within OHPLBJKB_00711at 728.306 kb on - strand, within OHPLBJKB_00711at 728.306 kb on - strand, within OHPLBJKB_00711at 728.306 kb on - strand, within OHPLBJKB_00711at 728.306 kb on - strand, within OHPLBJKB_00711at 728.336 kb on + strand, within OHPLBJKB_00711at 728.337 kb on - strand, within OHPLBJKB_00711at 728.337 kb on - strand, within OHPLBJKB_00711at 728.337 kb on - strand, within OHPLBJKB_00711at 728.340 kb on + strand, within OHPLBJKB_00711

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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725,544 + OHPLBJKB_00707 0.56 +1.2
725,544 + OHPLBJKB_00707 0.56 +0.0
725,585 - OHPLBJKB_00707 0.64 -0.2
725,702 + OHPLBJKB_00707 0.88 +0.0
725,702 + OHPLBJKB_00707 0.88 +0.3
725,821 + OHPLBJKB_00708 0.20 +0.8
725,822 - OHPLBJKB_00708 0.20 -0.3
725,937 + OHPLBJKB_00708 0.54 +0.0
725,937 + OHPLBJKB_00708 0.54 -0.5
725,938 - OHPLBJKB_00708 0.54 +0.8
725,938 - OHPLBJKB_00708 0.54 -0.9
725,938 - OHPLBJKB_00708 0.54 -1.0
725,938 - OHPLBJKB_00708 0.54 -0.8
725,938 - OHPLBJKB_00708 0.54 -0.3
725,941 + OHPLBJKB_00708 0.55 +0.6
725,942 - OHPLBJKB_00708 0.55 -1.2
725,942 - OHPLBJKB_00708 0.55 -0.1
725,948 + OHPLBJKB_00708 0.57 -0.6
726,105 + +0.4
726,105 + +0.0
726,105 + -0.4
726,105 + +0.0
726,106 - -2.6
726,113 - -0.3
726,152 - OHPLBJKB_00709 0.18 -1.0
726,152 - OHPLBJKB_00709 0.18 +0.3
726,177 + OHPLBJKB_00709 0.28 -0.3
726,177 + OHPLBJKB_00709 0.28 +0.5
726,177 + OHPLBJKB_00709 0.28 -0.4
726,177 + OHPLBJKB_00709 0.28 -0.5
726,177 + OHPLBJKB_00709 0.28 -1.0
726,177 + OHPLBJKB_00709 0.28 +0.5
726,177 + OHPLBJKB_00709 0.28 -1.6
726,177 + OHPLBJKB_00709 0.28 -0.9
726,177 + OHPLBJKB_00709 0.28 +0.1
726,178 - OHPLBJKB_00709 0.29 -1.6
726,178 - OHPLBJKB_00709 0.29 -0.5
726,178 - OHPLBJKB_00709 0.29 +0.6
726,178 - OHPLBJKB_00709 0.29 -0.9
726,178 - OHPLBJKB_00709 0.29 -0.1
726,178 - OHPLBJKB_00709 0.29 +1.0
726,185 - OHPLBJKB_00709 0.31 +0.7
726,185 - OHPLBJKB_00709 0.31 -0.3
726,185 - OHPLBJKB_00709 0.31 -0.4
726,238 - OHPLBJKB_00709 0.53 -1.0
726,312 + OHPLBJKB_00709 0.82 -0.1
726,313 - OHPLBJKB_00709 0.83 -1.0
726,313 - OHPLBJKB_00709 0.83 -1.3
726,336 - +0.7
726,360 + -0.1
726,360 + -0.2
726,361 - -0.4
726,361 - -1.4
726,370 - -0.6
726,370 - -1.3
726,378 + +0.3
726,492 + -0.3
726,576 + OHPLBJKB_00710 0.11 -0.2
726,576 + OHPLBJKB_00710 0.11 -0.6
726,608 - OHPLBJKB_00710 0.15 -0.2
726,628 + OHPLBJKB_00710 0.17 +0.2
726,628 + OHPLBJKB_00710 0.17 -0.4
726,628 + OHPLBJKB_00710 0.17 -0.6
726,628 + OHPLBJKB_00710 0.17 -0.7
726,629 - OHPLBJKB_00710 0.17 -0.6
726,629 - OHPLBJKB_00710 0.17 +0.3
726,629 - OHPLBJKB_00710 0.17 +0.8
726,629 - OHPLBJKB_00710 0.17 +0.6
726,629 - OHPLBJKB_00710 0.17 +1.1
726,636 + OHPLBJKB_00710 0.18 -1.3
726,636 + OHPLBJKB_00710 0.18 +0.4
726,636 + OHPLBJKB_00710 0.18 -0.2
726,636 + OHPLBJKB_00710 0.18 +1.7
726,636 + OHPLBJKB_00710 0.18 -0.9
726,636 + OHPLBJKB_00710 0.18 -1.9
726,636 + OHPLBJKB_00710 0.18 -0.3
726,637 - OHPLBJKB_00710 0.18 +1.2
726,638 + OHPLBJKB_00710 0.18 +0.0
726,639 - OHPLBJKB_00710 0.19 -0.9
726,639 - OHPLBJKB_00710 0.19 +0.2
726,639 - OHPLBJKB_00710 0.19 -1.1
726,639 - OHPLBJKB_00710 0.19 -0.8
726,671 + OHPLBJKB_00710 0.22 +0.2
726,671 + OHPLBJKB_00710 0.22 +0.8
726,671 + OHPLBJKB_00710 0.22 -0.5
726,672 - OHPLBJKB_00710 0.22 -0.2
726,672 - OHPLBJKB_00710 0.22 +0.1
726,682 + OHPLBJKB_00710 0.24 -0.8
726,683 - OHPLBJKB_00710 0.24 +0.6
726,683 - OHPLBJKB_00710 0.24 +1.1
726,683 - OHPLBJKB_00710 0.24 +0.6
726,731 + OHPLBJKB_00710 0.29 -0.1
726,732 - OHPLBJKB_00710 0.29 +0.5
726,753 + OHPLBJKB_00710 0.32 +0.4
726,753 + OHPLBJKB_00710 0.32 -0.4
726,753 + OHPLBJKB_00710 0.32 -2.6
726,753 + OHPLBJKB_00710 0.32 -2.2
726,753 + OHPLBJKB_00710 0.32 -0.1
726,754 - OHPLBJKB_00710 0.32 -0.4
726,754 - OHPLBJKB_00710 0.32 +0.6
726,754 - OHPLBJKB_00710 0.32 +0.7
726,754 - OHPLBJKB_00710 0.32 -1.0
726,754 - OHPLBJKB_00710 0.32 -0.3
726,754 - OHPLBJKB_00710 0.32 -2.1
726,807 + OHPLBJKB_00710 0.38 -1.0
726,808 - OHPLBJKB_00710 0.38 +0.0
726,825 - OHPLBJKB_00710 0.40 -0.3
726,836 - OHPLBJKB_00710 0.41 +0.7
726,845 + OHPLBJKB_00710 0.42 -0.9
726,851 + OHPLBJKB_00710 0.43 -0.5
726,851 + OHPLBJKB_00710 0.43 -2.0
726,975 - OHPLBJKB_00710 0.57 -0.4
727,018 - OHPLBJKB_00710 0.62 +0.9
727,023 + OHPLBJKB_00710 0.63 -0.6
727,023 + OHPLBJKB_00710 0.63 -0.5
727,023 + OHPLBJKB_00710 0.63 -0.6
727,024 - OHPLBJKB_00710 0.63 -0.4
727,024 - OHPLBJKB_00710 0.63 -0.2
727,101 + OHPLBJKB_00710 0.72 +0.5
727,121 + OHPLBJKB_00710 0.74 -2.6
727,122 - OHPLBJKB_00710 0.74 -0.7
727,122 - OHPLBJKB_00710 0.74 +0.3
727,122 - OHPLBJKB_00710 0.74 +0.4
727,135 - OHPLBJKB_00710 0.76 -0.6
727,164 + OHPLBJKB_00710 0.79 -1.4
727,164 + OHPLBJKB_00710 0.79 -0.3
727,164 + OHPLBJKB_00710 0.79 -1.2
727,165 - OHPLBJKB_00710 0.79 -1.1
727,273 - -0.9
727,299 + +0.7
727,328 + +0.1
727,328 + -0.2
727,328 + +0.4
727,328 + -0.6
727,329 - -0.5
727,329 - -0.4
727,332 + -0.1
727,332 + -0.4
727,332 + -0.1
727,332 + +0.6
727,332 + -0.1
727,332 + -1.3
727,332 + +0.7
727,332 + -0.8
727,333 - -1.0
727,333 - -0.3
727,333 - -0.2
727,333 - -1.0
727,333 - -0.9
727,345 - +0.6
727,366 + +0.6
727,367 - -1.8
727,382 + -2.2
727,382 + -0.1
727,382 + -1.4
727,382 + -1.1
727,383 - +0.9
727,383 - +0.1
727,383 - +0.9
727,383 - -0.1
727,383 - -0.6
727,383 - -0.8
727,399 + -1.2
727,399 + -0.2
727,449 + -0.4
727,449 + +0.4
727,449 + +1.1
727,449 + +0.1
727,450 - -0.1
727,450 - +0.0
727,450 - -0.4
727,450 - -0.2
727,450 - -0.4
727,492 + -0.9
727,493 - +0.3
727,530 + +0.5
727,530 + -0.3
727,530 + -0.6
727,530 + -0.5
727,531 - -0.2
727,531 - +0.3
727,531 - +0.7
727,531 - -0.4
727,531 - -0.1
727,536 + -0.5
727,542 + +0.4
727,592 + +0.5
727,624 + +0.2
727,625 - +0.1
727,660 + -0.8
727,687 + +0.9
727,687 + +0.2
727,687 + +0.4
727,688 - -1.5
727,688 - -2.2
727,688 - +0.5
727,688 - +0.6
727,688 - -0.3
727,688 - +1.6
727,702 + +0.6
727,703 - +0.4
727,704 + +0.3
727,704 + -0.4
727,705 - -1.0
727,902 + OHPLBJKB_00711 0.19 +0.3
727,902 + OHPLBJKB_00711 0.19 -0.3
727,927 - OHPLBJKB_00711 0.20 -0.8
728,068 + OHPLBJKB_00711 0.28 +0.4
728,068 + OHPLBJKB_00711 0.28 +1.6
728,068 + OHPLBJKB_00711 0.28 +1.9
728,071 - OHPLBJKB_00711 0.28 -0.5
728,131 - OHPLBJKB_00711 0.31 -0.4
728,137 + OHPLBJKB_00711 0.32 +0.9
728,137 + OHPLBJKB_00711 0.32 +0.2
728,138 - OHPLBJKB_00711 0.32 +0.8
728,221 - OHPLBJKB_00711 0.36 -1.2
728,257 + OHPLBJKB_00711 0.38 +0.4
728,257 + OHPLBJKB_00711 0.38 -0.8
728,257 + OHPLBJKB_00711 0.38 -0.2
728,302 + OHPLBJKB_00711 0.40 -0.6
728,303 - OHPLBJKB_00711 0.41 +0.2
728,303 - OHPLBJKB_00711 0.41 -0.2
728,303 - OHPLBJKB_00711 0.41 -0.2
728,305 + OHPLBJKB_00711 0.41 -0.7
728,305 + OHPLBJKB_00711 0.41 -0.2
728,305 + OHPLBJKB_00711 0.41 -0.6
728,305 + OHPLBJKB_00711 0.41 -0.4
728,305 + OHPLBJKB_00711 0.41 +0.7
728,306 - OHPLBJKB_00711 0.41 +1.0
728,306 - OHPLBJKB_00711 0.41 -1.2
728,306 - OHPLBJKB_00711 0.41 -1.5
728,306 - OHPLBJKB_00711 0.41 -0.2
728,306 - OHPLBJKB_00711 0.41 +0.4
728,336 + OHPLBJKB_00711 0.42 -0.1
728,337 - OHPLBJKB_00711 0.42 -0.6
728,337 - OHPLBJKB_00711 0.42 -0.9
728,337 - OHPLBJKB_00711 0.42 +0.1
728,340 + OHPLBJKB_00711 0.43 -1.2

Or see this region's nucleotide sequence