Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00657 and OHPLBJKB_00658 are separated by 1 nucleotides OHPLBJKB_00658 and OHPLBJKB_00659 are separated by 21 nucleotides OHPLBJKB_00659 and OHPLBJKB_00660 are separated by 50 nucleotides OHPLBJKB_00660 and OHPLBJKB_00661 are separated by 283 nucleotides
OHPLBJKB_00657: OHPLBJKB_00657 - hypothetical protein, at 675,707 to 676,771
_00657
OHPLBJKB_00658: OHPLBJKB_00658 - Chaperone protein PapD, at 676,773 to 677,522
_00658
OHPLBJKB_00659: OHPLBJKB_00659 - Outer membrane usher protein PapC, at 677,544 to 680,054
_00659
OHPLBJKB_00660: OHPLBJKB_00660 - putative fimbrial-like protein YbgD, at 680,105 to 680,656
_00660
OHPLBJKB_00661: OHPLBJKB_00661 - putative protein YqiC, at 680,940 to 681,230
_00661
Position (kb) 677
678
679
680
681 Strain fitness (log2 ratio) -2
-1
0
1
2 at 676.573 kb on + strand, within OHPLBJKB_00657 at 676.659 kb on + strand, within OHPLBJKB_00657 at 676.660 kb on - strand, within OHPLBJKB_00657 at 676.660 kb on - strand, within OHPLBJKB_00657 at 676.699 kb on - strand at 676.742 kb on - strand at 676.758 kb on - strand at 676.811 kb on + strand at 676.868 kb on - strand, within OHPLBJKB_00658 at 676.979 kb on + strand, within OHPLBJKB_00658 at 676.992 kb on - strand, within OHPLBJKB_00658 at 677.482 kb on - strand at 677.634 kb on + strand at 677.671 kb on + strand at 677.673 kb on + strand at 677.673 kb on + strand at 677.674 kb on - strand at 677.674 kb on - strand at 677.728 kb on - strand at 677.789 kb on - strand at 677.913 kb on + strand, within OHPLBJKB_00659 at 677.913 kb on + strand, within OHPLBJKB_00659 at 677.914 kb on - strand, within OHPLBJKB_00659 at 677.914 kb on - strand, within OHPLBJKB_00659 at 677.918 kb on - strand, within OHPLBJKB_00659 at 677.936 kb on + strand, within OHPLBJKB_00659 at 677.957 kb on + strand, within OHPLBJKB_00659 at 678.015 kb on - strand, within OHPLBJKB_00659 at 678.038 kb on + strand, within OHPLBJKB_00659 at 678.040 kb on + strand, within OHPLBJKB_00659 at 678.041 kb on - strand, within OHPLBJKB_00659 at 678.109 kb on + strand, within OHPLBJKB_00659 at 678.109 kb on + strand, within OHPLBJKB_00659 at 678.109 kb on + strand, within OHPLBJKB_00659 at 678.140 kb on - strand, within OHPLBJKB_00659 at 678.161 kb on + strand, within OHPLBJKB_00659 at 678.162 kb on - strand, within OHPLBJKB_00659 at 678.170 kb on - strand, within OHPLBJKB_00659 at 678.195 kb on - strand, within OHPLBJKB_00659 at 678.309 kb on - strand, within OHPLBJKB_00659 at 678.309 kb on - strand, within OHPLBJKB_00659 at 678.358 kb on + strand, within OHPLBJKB_00659 at 678.418 kb on - strand, within OHPLBJKB_00659 at 678.466 kb on + strand, within OHPLBJKB_00659 at 678.476 kb on + strand, within OHPLBJKB_00659 at 678.477 kb on - strand, within OHPLBJKB_00659 at 678.517 kb on + strand, within OHPLBJKB_00659 at 678.517 kb on + strand, within OHPLBJKB_00659 at 678.518 kb on - strand, within OHPLBJKB_00659 at 678.522 kb on - strand, within OHPLBJKB_00659 at 678.596 kb on - strand, within OHPLBJKB_00659 at 678.614 kb on + strand, within OHPLBJKB_00659 at 678.615 kb on - strand, within OHPLBJKB_00659 at 678.616 kb on + strand, within OHPLBJKB_00659 at 678.704 kb on - strand, within OHPLBJKB_00659 at 678.708 kb on - strand, within OHPLBJKB_00659 at 678.719 kb on + strand, within OHPLBJKB_00659 at 678.719 kb on + strand, within OHPLBJKB_00659 at 678.719 kb on + strand, within OHPLBJKB_00659 at 678.743 kb on + strand, within OHPLBJKB_00659 at 678.747 kb on + strand, within OHPLBJKB_00659 at 678.748 kb on - strand, within OHPLBJKB_00659 at 678.803 kb on + strand, within OHPLBJKB_00659 at 678.846 kb on + strand, within OHPLBJKB_00659 at 678.849 kb on + strand, within OHPLBJKB_00659 at 678.863 kb on - strand, within OHPLBJKB_00659 at 678.863 kb on - strand, within OHPLBJKB_00659 at 678.870 kb on + strand, within OHPLBJKB_00659 at 678.870 kb on + strand, within OHPLBJKB_00659 at 678.965 kb on + strand, within OHPLBJKB_00659 at 678.965 kb on + strand, within OHPLBJKB_00659 at 678.966 kb on - strand, within OHPLBJKB_00659 at 678.966 kb on - strand, within OHPLBJKB_00659 at 679.007 kb on + strand, within OHPLBJKB_00659 at 679.008 kb on - strand, within OHPLBJKB_00659 at 679.008 kb on - strand, within OHPLBJKB_00659 at 679.008 kb on - strand, within OHPLBJKB_00659 at 679.010 kb on + strand, within OHPLBJKB_00659 at 679.010 kb on + strand, within OHPLBJKB_00659 at 679.010 kb on + strand, within OHPLBJKB_00659 at 679.010 kb on + strand, within OHPLBJKB_00659 at 679.011 kb on - strand, within OHPLBJKB_00659 at 679.011 kb on - strand, within OHPLBJKB_00659 at 679.082 kb on + strand, within OHPLBJKB_00659 at 679.082 kb on + strand, within OHPLBJKB_00659 at 679.137 kb on - strand, within OHPLBJKB_00659 at 679.137 kb on - strand, within OHPLBJKB_00659 at 679.137 kb on - strand, within OHPLBJKB_00659 at 679.212 kb on + strand, within OHPLBJKB_00659 at 679.306 kb on - strand, within OHPLBJKB_00659 at 679.306 kb on - strand, within OHPLBJKB_00659 at 679.307 kb on + strand, within OHPLBJKB_00659 at 679.308 kb on - strand, within OHPLBJKB_00659 at 679.308 kb on - strand, within OHPLBJKB_00659 at 679.408 kb on + strand, within OHPLBJKB_00659 at 679.462 kb on + strand, within OHPLBJKB_00659 at 679.518 kb on + strand, within OHPLBJKB_00659 at 679.547 kb on + strand, within OHPLBJKB_00659 at 679.617 kb on + strand, within OHPLBJKB_00659 at 679.617 kb on + strand, within OHPLBJKB_00659 at 679.618 kb on - strand, within OHPLBJKB_00659 at 679.648 kb on + strand, within OHPLBJKB_00659 at 679.789 kb on - strand, within OHPLBJKB_00659 at 679.853 kb on - strand at 679.867 kb on - strand at 680.016 kb on + strand at 680.057 kb on - strand at 680.057 kb on - strand at 680.124 kb on + strand at 680.140 kb on - strand at 680.216 kb on - strand, within OHPLBJKB_00660 at 680.227 kb on + strand, within OHPLBJKB_00660 at 680.227 kb on + strand, within OHPLBJKB_00660 at 680.228 kb on - strand, within OHPLBJKB_00660 at 680.228 kb on - strand, within OHPLBJKB_00660 at 680.231 kb on + strand, within OHPLBJKB_00660 at 680.231 kb on + strand, within OHPLBJKB_00660 at 680.231 kb on + strand, within OHPLBJKB_00660 at 680.243 kb on - strand, within OHPLBJKB_00660 at 680.246 kb on + strand, within OHPLBJKB_00660 at 680.253 kb on - strand, within OHPLBJKB_00660 at 680.282 kb on + strand, within OHPLBJKB_00660 at 680.282 kb on + strand, within OHPLBJKB_00660 at 680.283 kb on - strand, within OHPLBJKB_00660 at 680.365 kb on + strand, within OHPLBJKB_00660 at 680.392 kb on - strand, within OHPLBJKB_00660 at 680.396 kb on - strand, within OHPLBJKB_00660 at 680.480 kb on - strand, within OHPLBJKB_00660 at 680.486 kb on + strand, within OHPLBJKB_00660 at 680.808 kb on - strand at 680.905 kb on + strand at 680.991 kb on - strand, within OHPLBJKB_00661
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 676,573 + OHPLBJKB_00657 0.81 +0.5 676,659 + OHPLBJKB_00657 0.89 +0.0 676,660 - OHPLBJKB_00657 0.89 -0.5 676,660 - OHPLBJKB_00657 0.89 -0.1 676,699 - +0.2 676,742 - -0.6 676,758 - -0.4 676,811 + +0.5 676,868 - OHPLBJKB_00658 0.13 -0.5 676,979 + OHPLBJKB_00658 0.27 +0.1 676,992 - OHPLBJKB_00658 0.29 -1.4 677,482 - -0.6 677,634 + -0.6 677,671 + +0.9 677,673 + -0.3 677,673 + -0.4 677,674 - -1.8 677,674 - -0.7 677,728 - -0.9 677,789 - +0.7 677,913 + OHPLBJKB_00659 0.15 +0.5 677,913 + OHPLBJKB_00659 0.15 -0.7 677,914 - OHPLBJKB_00659 0.15 +0.8 677,914 - OHPLBJKB_00659 0.15 -1.0 677,918 - OHPLBJKB_00659 0.15 -1.0 677,936 + OHPLBJKB_00659 0.16 +1.6 677,957 + OHPLBJKB_00659 0.16 -0.6 678,015 - OHPLBJKB_00659 0.19 +0.9 678,038 + OHPLBJKB_00659 0.20 -0.9 678,040 + OHPLBJKB_00659 0.20 +0.8 678,041 - OHPLBJKB_00659 0.20 -2.0 678,109 + OHPLBJKB_00659 0.23 +0.2 678,109 + OHPLBJKB_00659 0.23 -0.0 678,109 + OHPLBJKB_00659 0.23 -0.1 678,140 - OHPLBJKB_00659 0.24 -0.9 678,161 + OHPLBJKB_00659 0.25 -1.7 678,162 - OHPLBJKB_00659 0.25 +0.6 678,170 - OHPLBJKB_00659 0.25 +0.9 678,195 - OHPLBJKB_00659 0.26 -0.2 678,309 - OHPLBJKB_00659 0.30 -0.2 678,309 - OHPLBJKB_00659 0.30 -0.3 678,358 + OHPLBJKB_00659 0.32 -0.7 678,418 - OHPLBJKB_00659 0.35 -0.7 678,466 + OHPLBJKB_00659 0.37 -1.1 678,476 + OHPLBJKB_00659 0.37 -0.9 678,477 - OHPLBJKB_00659 0.37 +0.1 678,517 + OHPLBJKB_00659 0.39 -0.1 678,517 + OHPLBJKB_00659 0.39 +0.1 678,518 - OHPLBJKB_00659 0.39 -0.4 678,522 - OHPLBJKB_00659 0.39 +0.3 678,596 - OHPLBJKB_00659 0.42 -1.0 678,614 + OHPLBJKB_00659 0.43 -1.3 678,615 - OHPLBJKB_00659 0.43 +0.4 678,616 + OHPLBJKB_00659 0.43 -0.6 678,704 - OHPLBJKB_00659 0.46 -0.4 678,708 - OHPLBJKB_00659 0.46 +0.6 678,719 + OHPLBJKB_00659 0.47 -1.1 678,719 + OHPLBJKB_00659 0.47 -0.5 678,719 + OHPLBJKB_00659 0.47 +1.7 678,743 + OHPLBJKB_00659 0.48 -0.9 678,747 + OHPLBJKB_00659 0.48 -0.6 678,748 - OHPLBJKB_00659 0.48 +0.2 678,803 + OHPLBJKB_00659 0.50 -0.2 678,846 + OHPLBJKB_00659 0.52 -0.7 678,849 + OHPLBJKB_00659 0.52 +0.3 678,863 - OHPLBJKB_00659 0.53 +0.8 678,863 - OHPLBJKB_00659 0.53 -1.1 678,870 + OHPLBJKB_00659 0.53 +0.2 678,870 + OHPLBJKB_00659 0.53 -1.9 678,965 + OHPLBJKB_00659 0.57 -0.9 678,965 + OHPLBJKB_00659 0.57 -0.7 678,966 - OHPLBJKB_00659 0.57 -0.9 678,966 - OHPLBJKB_00659 0.57 -0.6 679,007 + OHPLBJKB_00659 0.58 -0.5 679,008 - OHPLBJKB_00659 0.58 -0.3 679,008 - OHPLBJKB_00659 0.58 +0.6 679,008 - OHPLBJKB_00659 0.58 +1.1 679,010 + OHPLBJKB_00659 0.58 +0.4 679,010 + OHPLBJKB_00659 0.58 -0.4 679,010 + OHPLBJKB_00659 0.58 -0.0 679,010 + OHPLBJKB_00659 0.58 +0.5 679,011 - OHPLBJKB_00659 0.58 +0.2 679,011 - OHPLBJKB_00659 0.58 +1.6 679,082 + OHPLBJKB_00659 0.61 -0.7 679,082 + OHPLBJKB_00659 0.61 +0.4 679,137 - OHPLBJKB_00659 0.63 -0.4 679,137 - OHPLBJKB_00659 0.63 +0.4 679,137 - OHPLBJKB_00659 0.63 -0.7 679,212 + OHPLBJKB_00659 0.66 -0.6 679,306 - OHPLBJKB_00659 0.70 +0.5 679,306 - OHPLBJKB_00659 0.70 -0.8 679,307 + OHPLBJKB_00659 0.70 +0.4 679,308 - OHPLBJKB_00659 0.70 -1.8 679,308 - OHPLBJKB_00659 0.70 +0.0 679,408 + OHPLBJKB_00659 0.74 -0.7 679,462 + OHPLBJKB_00659 0.76 +0.1 679,518 + OHPLBJKB_00659 0.79 +0.2 679,547 + OHPLBJKB_00659 0.80 -0.4 679,617 + OHPLBJKB_00659 0.83 -1.7 679,617 + OHPLBJKB_00659 0.83 -1.1 679,618 - OHPLBJKB_00659 0.83 +0.4 679,648 + OHPLBJKB_00659 0.84 -0.6 679,789 - OHPLBJKB_00659 0.89 +0.3 679,853 - -0.7 679,867 - +0.0 680,016 + -0.4 680,057 - +0.0 680,057 - -2.0 680,124 + +1.6 680,140 - -0.2 680,216 - OHPLBJKB_00660 0.20 -1.2 680,227 + OHPLBJKB_00660 0.22 +1.6 680,227 + OHPLBJKB_00660 0.22 +0.6 680,228 - OHPLBJKB_00660 0.22 +0.3 680,228 - OHPLBJKB_00660 0.22 -0.3 680,231 + OHPLBJKB_00660 0.23 +1.3 680,231 + OHPLBJKB_00660 0.23 -0.6 680,231 + OHPLBJKB_00660 0.23 -0.2 680,243 - OHPLBJKB_00660 0.25 -1.2 680,246 + OHPLBJKB_00660 0.26 +0.5 680,253 - OHPLBJKB_00660 0.27 +0.4 680,282 + OHPLBJKB_00660 0.32 -0.4 680,282 + OHPLBJKB_00660 0.32 -1.7 680,283 - OHPLBJKB_00660 0.32 -0.7 680,365 + OHPLBJKB_00660 0.47 -0.7 680,392 - OHPLBJKB_00660 0.52 +0.8 680,396 - OHPLBJKB_00660 0.53 -0.0 680,480 - OHPLBJKB_00660 0.68 +1.6 680,486 + OHPLBJKB_00660 0.69 +0.2 680,808 - +2.2 680,905 + +0.1 680,991 - OHPLBJKB_00661 0.18 -0.5
Or see this region's nucleotide sequence