Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00563

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00561 and OHPLBJKB_00562 overlap by 11 nucleotidesOHPLBJKB_00562 and OHPLBJKB_00563 are separated by 38 nucleotidesOHPLBJKB_00563 and OHPLBJKB_00564 are separated by 166 nucleotides OHPLBJKB_00561: OHPLBJKB_00561 - PTS system mannose-specific EIID component, at 573,707 to 574,498 _00561 OHPLBJKB_00562: OHPLBJKB_00562 - N-acetylgalactosamine permease IIC component 1, at 574,488 to 575,291 _00562 OHPLBJKB_00563: OHPLBJKB_00563 - PTS system sorbose-specific EIIB component, at 575,330 to 575,806 _00563 OHPLBJKB_00564: OHPLBJKB_00564 - D-tagatose-1,6-bisphosphate aldolase subunit KbaY, at 575,973 to 576,833 _00564 Position (kb) 575 576Strain fitness (log2 ratio) -2 -1 0 1 2at 574.362 kb on + strand, within OHPLBJKB_00561at 574.363 kb on - strand, within OHPLBJKB_00561at 574.363 kb on - strand, within OHPLBJKB_00561at 574.363 kb on - strand, within OHPLBJKB_00561at 574.396 kb on + strand, within OHPLBJKB_00561at 574.396 kb on + strand, within OHPLBJKB_00561at 574.505 kb on - strandat 574.580 kb on - strand, within OHPLBJKB_00562at 574.636 kb on + strand, within OHPLBJKB_00562at 574.637 kb on - strand, within OHPLBJKB_00562at 574.666 kb on + strand, within OHPLBJKB_00562at 574.667 kb on - strand, within OHPLBJKB_00562at 574.673 kb on + strand, within OHPLBJKB_00562at 574.674 kb on - strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.676 kb on - strand, within OHPLBJKB_00562at 574.676 kb on - strand, within OHPLBJKB_00562at 574.676 kb on - strand, within OHPLBJKB_00562at 574.676 kb on - strand, within OHPLBJKB_00562at 574.731 kb on - strand, within OHPLBJKB_00562at 574.810 kb on + strand, within OHPLBJKB_00562at 574.811 kb on - strand, within OHPLBJKB_00562at 574.811 kb on - strand, within OHPLBJKB_00562at 574.811 kb on - strand, within OHPLBJKB_00562at 574.814 kb on + strand, within OHPLBJKB_00562at 574.814 kb on + strand, within OHPLBJKB_00562at 574.815 kb on - strand, within OHPLBJKB_00562at 574.815 kb on - strand, within OHPLBJKB_00562at 574.815 kb on - strand, within OHPLBJKB_00562at 574.838 kb on - strand, within OHPLBJKB_00562at 574.838 kb on - strand, within OHPLBJKB_00562at 574.871 kb on + strand, within OHPLBJKB_00562at 574.914 kb on - strand, within OHPLBJKB_00562at 574.929 kb on - strand, within OHPLBJKB_00562at 574.933 kb on - strand, within OHPLBJKB_00562at 574.967 kb on - strand, within OHPLBJKB_00562at 574.982 kb on + strand, within OHPLBJKB_00562at 574.982 kb on + strand, within OHPLBJKB_00562at 574.982 kb on + strand, within OHPLBJKB_00562at 575.275 kb on - strandat 575.408 kb on + strand, within OHPLBJKB_00563at 575.520 kb on - strand, within OHPLBJKB_00563at 575.528 kb on - strand, within OHPLBJKB_00563at 575.653 kb on + strand, within OHPLBJKB_00563at 575.654 kb on - strand, within OHPLBJKB_00563at 575.674 kb on + strand, within OHPLBJKB_00563at 575.706 kb on - strand, within OHPLBJKB_00563at 575.943 kb on - strandat 576.056 kb on + strandat 576.058 kb on + strandat 576.058 kb on + strandat 576.059 kb on - strand, within OHPLBJKB_00564at 576.123 kb on + strand, within OHPLBJKB_00564at 576.286 kb on + strand, within OHPLBJKB_00564at 576.287 kb on - strand, within OHPLBJKB_00564at 576.287 kb on - strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.289 kb on - strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.617 kb on - strand, within OHPLBJKB_00564at 576.617 kb on - strand, within OHPLBJKB_00564at 576.617 kb on - strand, within OHPLBJKB_00564at 576.629 kb on - strand, within OHPLBJKB_00564at 576.636 kb on - strand, within OHPLBJKB_00564at 576.646 kb on + strand, within OHPLBJKB_00564at 576.646 kb on + strand, within OHPLBJKB_00564at 576.646 kb on + strand, within OHPLBJKB_00564at 576.647 kb on - strand, within OHPLBJKB_00564at 576.647 kb on - strand, within OHPLBJKB_00564at 576.764 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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574,362 + OHPLBJKB_00561 0.83 +0.3
574,363 - OHPLBJKB_00561 0.83 -0.3
574,363 - OHPLBJKB_00561 0.83 +1.0
574,363 - OHPLBJKB_00561 0.83 -0.4
574,396 + OHPLBJKB_00561 0.87 -1.1
574,396 + OHPLBJKB_00561 0.87 +1.4
574,505 - +0.9
574,580 - OHPLBJKB_00562 0.11 -1.1
574,636 + OHPLBJKB_00562 0.18 +0.2
574,637 - OHPLBJKB_00562 0.19 -1.5
574,666 + OHPLBJKB_00562 0.22 -0.6
574,667 - OHPLBJKB_00562 0.22 -0.4
574,673 + OHPLBJKB_00562 0.23 +0.4
574,674 - OHPLBJKB_00562 0.23 +1.4
574,675 + OHPLBJKB_00562 0.23 -0.4
574,675 + OHPLBJKB_00562 0.23 -0.2
574,675 + OHPLBJKB_00562 0.23 +0.4
574,675 + OHPLBJKB_00562 0.23 -0.8
574,675 + OHPLBJKB_00562 0.23 +0.0
574,675 + OHPLBJKB_00562 0.23 -0.8
574,675 + OHPLBJKB_00562 0.23 -0.1
574,676 - OHPLBJKB_00562 0.23 +0.9
574,676 - OHPLBJKB_00562 0.23 -0.3
574,676 - OHPLBJKB_00562 0.23 -0.4
574,676 - OHPLBJKB_00562 0.23 -0.2
574,731 - OHPLBJKB_00562 0.30 +0.5
574,810 + OHPLBJKB_00562 0.40 -0.1
574,811 - OHPLBJKB_00562 0.40 -1.7
574,811 - OHPLBJKB_00562 0.40 -0.4
574,811 - OHPLBJKB_00562 0.40 +0.4
574,814 + OHPLBJKB_00562 0.41 +1.0
574,814 + OHPLBJKB_00562 0.41 -1.2
574,815 - OHPLBJKB_00562 0.41 -0.2
574,815 - OHPLBJKB_00562 0.41 -0.2
574,815 - OHPLBJKB_00562 0.41 -1.4
574,838 - OHPLBJKB_00562 0.44 -0.5
574,838 - OHPLBJKB_00562 0.44 -0.5
574,871 + OHPLBJKB_00562 0.48 +0.4
574,914 - OHPLBJKB_00562 0.53 -0.4
574,929 - OHPLBJKB_00562 0.55 -1.0
574,933 - OHPLBJKB_00562 0.55 -1.8
574,967 - OHPLBJKB_00562 0.60 -0.6
574,982 + OHPLBJKB_00562 0.61 +0.9
574,982 + OHPLBJKB_00562 0.61 +0.2
574,982 + OHPLBJKB_00562 0.61 +0.4
575,275 - -1.0
575,408 + OHPLBJKB_00563 0.16 -1.2
575,520 - OHPLBJKB_00563 0.40 -1.1
575,528 - OHPLBJKB_00563 0.42 -1.5
575,653 + OHPLBJKB_00563 0.68 -0.3
575,654 - OHPLBJKB_00563 0.68 +0.8
575,674 + OHPLBJKB_00563 0.72 +0.2
575,706 - OHPLBJKB_00563 0.79 -0.2
575,943 - +0.0
576,056 + +1.4
576,058 + +0.0
576,058 + -0.4
576,059 - OHPLBJKB_00564 0.10 +0.5
576,123 + OHPLBJKB_00564 0.17 +0.0
576,286 + OHPLBJKB_00564 0.36 -0.2
576,287 - OHPLBJKB_00564 0.36 +0.5
576,287 - OHPLBJKB_00564 0.36 +0.2
576,288 + OHPLBJKB_00564 0.37 -2.1
576,288 + OHPLBJKB_00564 0.37 -0.7
576,288 + OHPLBJKB_00564 0.37 -0.1
576,288 + OHPLBJKB_00564 0.37 -0.7
576,289 - OHPLBJKB_00564 0.37 -0.5
576,616 + OHPLBJKB_00564 0.75 -0.6
576,616 + OHPLBJKB_00564 0.75 +0.3
576,616 + OHPLBJKB_00564 0.75 -0.7
576,616 + OHPLBJKB_00564 0.75 +0.4
576,616 + OHPLBJKB_00564 0.75 +0.3
576,616 + OHPLBJKB_00564 0.75 -0.2
576,616 + OHPLBJKB_00564 0.75 +1.6
576,617 - OHPLBJKB_00564 0.75 +0.0
576,617 - OHPLBJKB_00564 0.75 +2.0
576,617 - OHPLBJKB_00564 0.75 +0.3
576,629 - OHPLBJKB_00564 0.76 -0.6
576,636 - OHPLBJKB_00564 0.77 +0.7
576,646 + OHPLBJKB_00564 0.78 -2.5
576,646 + OHPLBJKB_00564 0.78 -0.1
576,646 + OHPLBJKB_00564 0.78 +0.3
576,647 - OHPLBJKB_00564 0.78 -2.4
576,647 - OHPLBJKB_00564 0.78 -0.2
576,764 + -1.1

Or see this region's nucleotide sequence