Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00562

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00560 and OHPLBJKB_00561 are separated by 54 nucleotidesOHPLBJKB_00561 and OHPLBJKB_00562 overlap by 11 nucleotidesOHPLBJKB_00562 and OHPLBJKB_00563 are separated by 38 nucleotidesOHPLBJKB_00563 and OHPLBJKB_00564 are separated by 166 nucleotides OHPLBJKB_00560: OHPLBJKB_00560 - Glucosamine-6-phosphate deaminase 1, at 572,951 to 573,652 _00560 OHPLBJKB_00561: OHPLBJKB_00561 - PTS system mannose-specific EIID component, at 573,707 to 574,498 _00561 OHPLBJKB_00562: OHPLBJKB_00562 - N-acetylgalactosamine permease IIC component 1, at 574,488 to 575,291 _00562 OHPLBJKB_00563: OHPLBJKB_00563 - PTS system sorbose-specific EIIB component, at 575,330 to 575,806 _00563 OHPLBJKB_00564: OHPLBJKB_00564 - D-tagatose-1,6-bisphosphate aldolase subunit KbaY, at 575,973 to 576,833 _00564 Position (kb) 574 575 576Strain fitness (log2 ratio) -2 -1 0 1 2at 573.513 kb on + strand, within OHPLBJKB_00560at 573.513 kb on + strand, within OHPLBJKB_00560at 573.513 kb on + strand, within OHPLBJKB_00560at 573.519 kb on + strand, within OHPLBJKB_00560at 573.519 kb on + strand, within OHPLBJKB_00560at 573.520 kb on - strand, within OHPLBJKB_00560at 573.590 kb on + strandat 573.591 kb on - strandat 573.594 kb on + strandat 573.594 kb on + strandat 573.595 kb on - strandat 573.624 kb on + strandat 573.624 kb on + strandat 573.624 kb on + strandat 573.624 kb on + strandat 573.625 kb on - strandat 573.625 kb on - strandat 573.625 kb on - strandat 573.625 kb on - strandat 573.667 kb on + strandat 573.671 kb on + strandat 573.671 kb on + strandat 573.672 kb on - strandat 573.672 kb on - strandat 573.737 kb on - strandat 573.737 kb on - strandat 573.798 kb on + strand, within OHPLBJKB_00561at 573.799 kb on - strand, within OHPLBJKB_00561at 573.799 kb on - strand, within OHPLBJKB_00561at 573.801 kb on + strand, within OHPLBJKB_00561at 573.801 kb on + strand, within OHPLBJKB_00561at 573.801 kb on + strand, within OHPLBJKB_00561at 573.801 kb on + strand, within OHPLBJKB_00561at 573.802 kb on - strand, within OHPLBJKB_00561at 573.827 kb on + strand, within OHPLBJKB_00561at 573.884 kb on - strand, within OHPLBJKB_00561at 573.916 kb on + strand, within OHPLBJKB_00561at 573.917 kb on - strand, within OHPLBJKB_00561at 573.917 kb on - strand, within OHPLBJKB_00561at 573.917 kb on - strand, within OHPLBJKB_00561at 573.924 kb on + strand, within OHPLBJKB_00561at 573.924 kb on + strand, within OHPLBJKB_00561at 573.924 kb on + strand, within OHPLBJKB_00561at 573.925 kb on - strand, within OHPLBJKB_00561at 573.925 kb on - strand, within OHPLBJKB_00561at 574.069 kb on + strand, within OHPLBJKB_00561at 574.077 kb on + strand, within OHPLBJKB_00561at 574.077 kb on + strand, within OHPLBJKB_00561at 574.163 kb on - strand, within OHPLBJKB_00561at 574.269 kb on - strand, within OHPLBJKB_00561at 574.303 kb on + strand, within OHPLBJKB_00561at 574.304 kb on - strand, within OHPLBJKB_00561at 574.307 kb on - strand, within OHPLBJKB_00561at 574.309 kb on + strand, within OHPLBJKB_00561at 574.322 kb on - strand, within OHPLBJKB_00561at 574.362 kb on + strand, within OHPLBJKB_00561at 574.363 kb on - strand, within OHPLBJKB_00561at 574.363 kb on - strand, within OHPLBJKB_00561at 574.363 kb on - strand, within OHPLBJKB_00561at 574.396 kb on + strand, within OHPLBJKB_00561at 574.396 kb on + strand, within OHPLBJKB_00561at 574.505 kb on - strandat 574.580 kb on - strand, within OHPLBJKB_00562at 574.636 kb on + strand, within OHPLBJKB_00562at 574.637 kb on - strand, within OHPLBJKB_00562at 574.666 kb on + strand, within OHPLBJKB_00562at 574.667 kb on - strand, within OHPLBJKB_00562at 574.673 kb on + strand, within OHPLBJKB_00562at 574.674 kb on - strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.675 kb on + strand, within OHPLBJKB_00562at 574.676 kb on - strand, within OHPLBJKB_00562at 574.676 kb on - strand, within OHPLBJKB_00562at 574.676 kb on - strand, within OHPLBJKB_00562at 574.676 kb on - strand, within OHPLBJKB_00562at 574.731 kb on - strand, within OHPLBJKB_00562at 574.810 kb on + strand, within OHPLBJKB_00562at 574.811 kb on - strand, within OHPLBJKB_00562at 574.811 kb on - strand, within OHPLBJKB_00562at 574.811 kb on - strand, within OHPLBJKB_00562at 574.814 kb on + strand, within OHPLBJKB_00562at 574.814 kb on + strand, within OHPLBJKB_00562at 574.815 kb on - strand, within OHPLBJKB_00562at 574.815 kb on - strand, within OHPLBJKB_00562at 574.815 kb on - strand, within OHPLBJKB_00562at 574.838 kb on - strand, within OHPLBJKB_00562at 574.838 kb on - strand, within OHPLBJKB_00562at 574.871 kb on + strand, within OHPLBJKB_00562at 574.914 kb on - strand, within OHPLBJKB_00562at 574.929 kb on - strand, within OHPLBJKB_00562at 574.933 kb on - strand, within OHPLBJKB_00562at 574.967 kb on - strand, within OHPLBJKB_00562at 574.982 kb on + strand, within OHPLBJKB_00562at 574.982 kb on + strand, within OHPLBJKB_00562at 574.982 kb on + strand, within OHPLBJKB_00562at 575.275 kb on - strandat 575.408 kb on + strand, within OHPLBJKB_00563at 575.520 kb on - strand, within OHPLBJKB_00563at 575.528 kb on - strand, within OHPLBJKB_00563at 575.653 kb on + strand, within OHPLBJKB_00563at 575.654 kb on - strand, within OHPLBJKB_00563at 575.674 kb on + strand, within OHPLBJKB_00563at 575.706 kb on - strand, within OHPLBJKB_00563at 575.943 kb on - strandat 576.056 kb on + strandat 576.058 kb on + strandat 576.058 kb on + strandat 576.059 kb on - strand, within OHPLBJKB_00564at 576.123 kb on + strand, within OHPLBJKB_00564at 576.286 kb on + strand, within OHPLBJKB_00564at 576.287 kb on - strand, within OHPLBJKB_00564at 576.287 kb on - strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.289 kb on - strand, within OHPLBJKB_00564

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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573,513 + OHPLBJKB_00560 0.80 -0.5
573,513 + OHPLBJKB_00560 0.80 -0.8
573,513 + OHPLBJKB_00560 0.80 -0.3
573,519 + OHPLBJKB_00560 0.81 +0.9
573,519 + OHPLBJKB_00560 0.81 -0.2
573,520 - OHPLBJKB_00560 0.81 +0.6
573,590 + -0.1
573,591 - +0.1
573,594 + +0.8
573,594 + -0.5
573,595 - +0.4
573,624 + +0.0
573,624 + +0.8
573,624 + -1.5
573,624 + -1.4
573,625 - +0.0
573,625 - -1.5
573,625 - +0.6
573,625 - +0.5
573,667 + -0.1
573,671 + -1.1
573,671 + -2.4
573,672 - -0.4
573,672 - +1.3
573,737 - +1.2
573,737 - +0.3
573,798 + OHPLBJKB_00561 0.11 +0.6
573,799 - OHPLBJKB_00561 0.12 +0.0
573,799 - OHPLBJKB_00561 0.12 -0.8
573,801 + OHPLBJKB_00561 0.12 -0.0
573,801 + OHPLBJKB_00561 0.12 +1.5
573,801 + OHPLBJKB_00561 0.12 -0.3
573,801 + OHPLBJKB_00561 0.12 -0.2
573,802 - OHPLBJKB_00561 0.12 -0.3
573,827 + OHPLBJKB_00561 0.15 +0.0
573,884 - OHPLBJKB_00561 0.22 +1.3
573,916 + OHPLBJKB_00561 0.26 -0.4
573,917 - OHPLBJKB_00561 0.27 -0.4
573,917 - OHPLBJKB_00561 0.27 -1.6
573,917 - OHPLBJKB_00561 0.27 +0.7
573,924 + OHPLBJKB_00561 0.27 -0.0
573,924 + OHPLBJKB_00561 0.27 -0.7
573,924 + OHPLBJKB_00561 0.27 +0.4
573,925 - OHPLBJKB_00561 0.28 +0.0
573,925 - OHPLBJKB_00561 0.28 +0.1
574,069 + OHPLBJKB_00561 0.46 +2.2
574,077 + OHPLBJKB_00561 0.47 +0.7
574,077 + OHPLBJKB_00561 0.47 -0.9
574,163 - OHPLBJKB_00561 0.58 +0.2
574,269 - OHPLBJKB_00561 0.71 +0.4
574,303 + OHPLBJKB_00561 0.75 -0.1
574,304 - OHPLBJKB_00561 0.75 -1.0
574,307 - OHPLBJKB_00561 0.76 -1.2
574,309 + OHPLBJKB_00561 0.76 +1.4
574,322 - OHPLBJKB_00561 0.78 -0.9
574,362 + OHPLBJKB_00561 0.83 +0.3
574,363 - OHPLBJKB_00561 0.83 -0.3
574,363 - OHPLBJKB_00561 0.83 +1.0
574,363 - OHPLBJKB_00561 0.83 -0.4
574,396 + OHPLBJKB_00561 0.87 -1.1
574,396 + OHPLBJKB_00561 0.87 +1.4
574,505 - +0.9
574,580 - OHPLBJKB_00562 0.11 -1.1
574,636 + OHPLBJKB_00562 0.18 +0.2
574,637 - OHPLBJKB_00562 0.19 -1.5
574,666 + OHPLBJKB_00562 0.22 -0.6
574,667 - OHPLBJKB_00562 0.22 -0.4
574,673 + OHPLBJKB_00562 0.23 +0.4
574,674 - OHPLBJKB_00562 0.23 +1.4
574,675 + OHPLBJKB_00562 0.23 -0.4
574,675 + OHPLBJKB_00562 0.23 -0.2
574,675 + OHPLBJKB_00562 0.23 +0.4
574,675 + OHPLBJKB_00562 0.23 -0.8
574,675 + OHPLBJKB_00562 0.23 +0.0
574,675 + OHPLBJKB_00562 0.23 -0.8
574,675 + OHPLBJKB_00562 0.23 -0.1
574,676 - OHPLBJKB_00562 0.23 +0.9
574,676 - OHPLBJKB_00562 0.23 -0.3
574,676 - OHPLBJKB_00562 0.23 -0.4
574,676 - OHPLBJKB_00562 0.23 -0.2
574,731 - OHPLBJKB_00562 0.30 +0.5
574,810 + OHPLBJKB_00562 0.40 -0.1
574,811 - OHPLBJKB_00562 0.40 -1.7
574,811 - OHPLBJKB_00562 0.40 -0.4
574,811 - OHPLBJKB_00562 0.40 +0.4
574,814 + OHPLBJKB_00562 0.41 +1.0
574,814 + OHPLBJKB_00562 0.41 -1.2
574,815 - OHPLBJKB_00562 0.41 -0.2
574,815 - OHPLBJKB_00562 0.41 -0.2
574,815 - OHPLBJKB_00562 0.41 -1.4
574,838 - OHPLBJKB_00562 0.44 -0.5
574,838 - OHPLBJKB_00562 0.44 -0.5
574,871 + OHPLBJKB_00562 0.48 +0.4
574,914 - OHPLBJKB_00562 0.53 -0.4
574,929 - OHPLBJKB_00562 0.55 -1.0
574,933 - OHPLBJKB_00562 0.55 -1.8
574,967 - OHPLBJKB_00562 0.60 -0.6
574,982 + OHPLBJKB_00562 0.61 +0.9
574,982 + OHPLBJKB_00562 0.61 +0.2
574,982 + OHPLBJKB_00562 0.61 +0.4
575,275 - -1.0
575,408 + OHPLBJKB_00563 0.16 -1.2
575,520 - OHPLBJKB_00563 0.40 -1.1
575,528 - OHPLBJKB_00563 0.42 -1.5
575,653 + OHPLBJKB_00563 0.68 -0.3
575,654 - OHPLBJKB_00563 0.68 +0.8
575,674 + OHPLBJKB_00563 0.72 +0.2
575,706 - OHPLBJKB_00563 0.79 -0.2
575,943 - +0.0
576,056 + +1.4
576,058 + +0.0
576,058 + -0.4
576,059 - OHPLBJKB_00564 0.10 +0.5
576,123 + OHPLBJKB_00564 0.17 +0.0
576,286 + OHPLBJKB_00564 0.36 -0.2
576,287 - OHPLBJKB_00564 0.36 +0.5
576,287 - OHPLBJKB_00564 0.36 +0.2
576,288 + OHPLBJKB_00564 0.37 -2.1
576,288 + OHPLBJKB_00564 0.37 -0.7
576,288 + OHPLBJKB_00564 0.37 -0.1
576,288 + OHPLBJKB_00564 0.37 -0.7
576,289 - OHPLBJKB_00564 0.37 -0.5

Or see this region's nucleotide sequence