Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00559

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00557 and OHPLBJKB_00558 are separated by 29 nucleotidesOHPLBJKB_00558 and OHPLBJKB_00559 are separated by 73 nucleotidesOHPLBJKB_00559 and OHPLBJKB_00560 are separated by 400 nucleotides OHPLBJKB_00557: OHPLBJKB_00557 - Outer membrane usher protein YraJ, at 568,645 to 571,161 _00557 OHPLBJKB_00558: OHPLBJKB_00558 - putative fimbrial chaperone YraI, at 571,191 to 571,892 _00558 OHPLBJKB_00559: OHPLBJKB_00559 - putative fimbrial-like protein YraH, at 571,966 to 572,550 _00559 OHPLBJKB_00560: OHPLBJKB_00560 - Glucosamine-6-phosphate deaminase 1, at 572,951 to 573,652 _00560 Position (kb) 571 572 573Strain fitness (log2 ratio) -2 -1 0 1 2at 571.031 kb on + strandat 571.031 kb on + strandat 571.032 kb on - strandat 571.032 kb on - strandat 571.032 kb on - strandat 571.035 kb on - strandat 571.035 kb on - strandat 571.135 kb on - strandat 571.135 kb on - strandat 571.135 kb on - strandat 571.135 kb on - strandat 571.185 kb on + strandat 571.231 kb on + strandat 571.293 kb on - strand, within OHPLBJKB_00558at 571.293 kb on - strand, within OHPLBJKB_00558at 571.312 kb on + strand, within OHPLBJKB_00558at 571.369 kb on + strand, within OHPLBJKB_00558at 571.373 kb on - strand, within OHPLBJKB_00558at 571.386 kb on - strand, within OHPLBJKB_00558at 571.387 kb on + strand, within OHPLBJKB_00558at 571.653 kb on + strand, within OHPLBJKB_00558at 571.665 kb on + strand, within OHPLBJKB_00558at 571.671 kb on - strand, within OHPLBJKB_00558at 571.695 kb on + strand, within OHPLBJKB_00558at 571.700 kb on + strand, within OHPLBJKB_00558at 571.700 kb on + strand, within OHPLBJKB_00558at 571.783 kb on + strand, within OHPLBJKB_00558at 571.783 kb on + strand, within OHPLBJKB_00558at 571.783 kb on + strand, within OHPLBJKB_00558at 571.783 kb on + strand, within OHPLBJKB_00558at 571.783 kb on + strand, within OHPLBJKB_00558at 571.784 kb on - strand, within OHPLBJKB_00558at 571.784 kb on - strand, within OHPLBJKB_00558at 571.784 kb on - strand, within OHPLBJKB_00558at 571.784 kb on - strand, within OHPLBJKB_00558at 571.784 kb on - strand, within OHPLBJKB_00558at 571.845 kb on - strandat 571.857 kb on + strandat 571.857 kb on + strandat 571.860 kb on + strandat 571.887 kb on - strandat 571.906 kb on - strandat 571.951 kb on + strandat 571.964 kb on + strandat 571.964 kb on + strandat 571.964 kb on + strandat 571.965 kb on - strandat 571.965 kb on - strandat 571.984 kb on + strandat 572.041 kb on + strand, within OHPLBJKB_00559at 572.041 kb on + strand, within OHPLBJKB_00559at 572.041 kb on + strand, within OHPLBJKB_00559at 572.041 kb on + strand, within OHPLBJKB_00559at 572.042 kb on - strand, within OHPLBJKB_00559at 572.045 kb on + strand, within OHPLBJKB_00559at 572.045 kb on + strand, within OHPLBJKB_00559at 572.045 kb on + strand, within OHPLBJKB_00559at 572.045 kb on + strand, within OHPLBJKB_00559at 572.046 kb on - strand, within OHPLBJKB_00559at 572.046 kb on - strand, within OHPLBJKB_00559at 572.049 kb on - strand, within OHPLBJKB_00559at 572.049 kb on - strand, within OHPLBJKB_00559at 572.073 kb on + strand, within OHPLBJKB_00559at 572.073 kb on + strand, within OHPLBJKB_00559at 572.074 kb on - strand, within OHPLBJKB_00559at 572.074 kb on - strand, within OHPLBJKB_00559at 572.110 kb on - strand, within OHPLBJKB_00559at 572.188 kb on + strand, within OHPLBJKB_00559at 572.263 kb on + strand, within OHPLBJKB_00559at 572.322 kb on + strand, within OHPLBJKB_00559at 572.322 kb on + strand, within OHPLBJKB_00559at 572.327 kb on - strand, within OHPLBJKB_00559at 572.390 kb on + strand, within OHPLBJKB_00559at 572.391 kb on - strand, within OHPLBJKB_00559at 572.552 kb on + strandat 572.553 kb on - strandat 572.576 kb on - strandat 572.586 kb on - strandat 572.589 kb on + strandat 572.811 kb on + strandat 572.971 kb on + strandat 572.972 kb on - strandat 572.972 kb on - strandat 573.100 kb on + strand, within OHPLBJKB_00560at 573.152 kb on + strand, within OHPLBJKB_00560at 573.152 kb on + strand, within OHPLBJKB_00560at 573.194 kb on - strand, within OHPLBJKB_00560at 573.269 kb on + strand, within OHPLBJKB_00560at 573.269 kb on + strand, within OHPLBJKB_00560at 573.329 kb on + strand, within OHPLBJKB_00560at 573.330 kb on - strand, within OHPLBJKB_00560at 573.369 kb on - strand, within OHPLBJKB_00560at 573.415 kb on + strand, within OHPLBJKB_00560at 573.419 kb on - strand, within OHPLBJKB_00560at 573.419 kb on - strand, within OHPLBJKB_00560at 573.419 kb on - strand, within OHPLBJKB_00560at 573.513 kb on + strand, within OHPLBJKB_00560at 573.513 kb on + strand, within OHPLBJKB_00560at 573.513 kb on + strand, within OHPLBJKB_00560at 573.519 kb on + strand, within OHPLBJKB_00560at 573.519 kb on + strand, within OHPLBJKB_00560at 573.520 kb on - strand, within OHPLBJKB_00560

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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571,031 + +0.5
571,031 + -0.8
571,032 - -0.0
571,032 - +1.4
571,032 - +0.4
571,035 - -1.0
571,035 - -0.8
571,135 - +0.6
571,135 - -0.5
571,135 - -0.7
571,135 - -0.8
571,185 + +0.5
571,231 + +0.4
571,293 - OHPLBJKB_00558 0.15 +0.6
571,293 - OHPLBJKB_00558 0.15 +0.5
571,312 + OHPLBJKB_00558 0.17 +0.7
571,369 + OHPLBJKB_00558 0.25 -0.6
571,373 - OHPLBJKB_00558 0.26 -0.3
571,386 - OHPLBJKB_00558 0.28 -0.4
571,387 + OHPLBJKB_00558 0.28 +0.6
571,653 + OHPLBJKB_00558 0.66 +0.0
571,665 + OHPLBJKB_00558 0.68 +0.6
571,671 - OHPLBJKB_00558 0.68 -0.2
571,695 + OHPLBJKB_00558 0.72 -1.0
571,700 + OHPLBJKB_00558 0.73 +0.9
571,700 + OHPLBJKB_00558 0.73 +0.0
571,783 + OHPLBJKB_00558 0.84 +0.2
571,783 + OHPLBJKB_00558 0.84 -0.6
571,783 + OHPLBJKB_00558 0.84 -0.6
571,783 + OHPLBJKB_00558 0.84 -0.2
571,783 + OHPLBJKB_00558 0.84 +0.8
571,784 - OHPLBJKB_00558 0.84 -1.0
571,784 - OHPLBJKB_00558 0.84 +0.1
571,784 - OHPLBJKB_00558 0.84 -0.6
571,784 - OHPLBJKB_00558 0.84 +0.9
571,784 - OHPLBJKB_00558 0.84 -0.0
571,845 - +0.1
571,857 + -0.8
571,857 + -0.2
571,860 + -0.1
571,887 - -0.6
571,906 - +0.6
571,951 + -1.0
571,964 + -1.8
571,964 + -0.1
571,964 + -0.4
571,965 - -1.6
571,965 - -0.2
571,984 + -0.2
572,041 + OHPLBJKB_00559 0.13 +0.3
572,041 + OHPLBJKB_00559 0.13 -0.3
572,041 + OHPLBJKB_00559 0.13 -0.2
572,041 + OHPLBJKB_00559 0.13 -1.0
572,042 - OHPLBJKB_00559 0.13 +0.3
572,045 + OHPLBJKB_00559 0.14 -0.1
572,045 + OHPLBJKB_00559 0.14 +0.8
572,045 + OHPLBJKB_00559 0.14 +0.0
572,045 + OHPLBJKB_00559 0.14 +2.0
572,046 - OHPLBJKB_00559 0.14 -1.4
572,046 - OHPLBJKB_00559 0.14 -1.5
572,049 - OHPLBJKB_00559 0.14 +0.5
572,049 - OHPLBJKB_00559 0.14 -0.5
572,073 + OHPLBJKB_00559 0.18 +0.2
572,073 + OHPLBJKB_00559 0.18 +0.5
572,074 - OHPLBJKB_00559 0.18 -0.9
572,074 - OHPLBJKB_00559 0.18 +0.5
572,110 - OHPLBJKB_00559 0.25 +0.2
572,188 + OHPLBJKB_00559 0.38 +0.4
572,263 + OHPLBJKB_00559 0.51 -2.1
572,322 + OHPLBJKB_00559 0.61 +0.4
572,322 + OHPLBJKB_00559 0.61 +1.0
572,327 - OHPLBJKB_00559 0.62 -1.8
572,390 + OHPLBJKB_00559 0.72 +1.3
572,391 - OHPLBJKB_00559 0.73 +0.1
572,552 + +0.3
572,553 - +0.6
572,576 - +0.9
572,586 - -1.5
572,589 + +0.2
572,811 + +0.5
572,971 + -0.1
572,972 - -0.5
572,972 - -0.3
573,100 + OHPLBJKB_00560 0.21 +1.0
573,152 + OHPLBJKB_00560 0.29 -0.3
573,152 + OHPLBJKB_00560 0.29 -0.5
573,194 - OHPLBJKB_00560 0.35 +0.0
573,269 + OHPLBJKB_00560 0.45 +0.4
573,269 + OHPLBJKB_00560 0.45 +0.3
573,329 + OHPLBJKB_00560 0.54 +0.5
573,330 - OHPLBJKB_00560 0.54 -0.4
573,369 - OHPLBJKB_00560 0.60 -0.4
573,415 + OHPLBJKB_00560 0.66 +1.6
573,419 - OHPLBJKB_00560 0.67 +0.6
573,419 - OHPLBJKB_00560 0.67 -0.2
573,419 - OHPLBJKB_00560 0.67 +0.4
573,513 + OHPLBJKB_00560 0.80 -0.5
573,513 + OHPLBJKB_00560 0.80 -0.8
573,513 + OHPLBJKB_00560 0.80 -0.3
573,519 + OHPLBJKB_00560 0.81 +0.9
573,519 + OHPLBJKB_00560 0.81 -0.2
573,520 - OHPLBJKB_00560 0.81 +0.6

Or see this region's nucleotide sequence