Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00148 and OHPLBJKB_00149 are separated by 79 nucleotides OHPLBJKB_00149 and OHPLBJKB_00150 are separated by 186 nucleotides OHPLBJKB_00150 and OHPLBJKB_00151 are separated by 280 nucleotides
OHPLBJKB_00148: OHPLBJKB_00148 - IS3 family transposase IS103, at 160,397 to 160,918
_00148
OHPLBJKB_00149: OHPLBJKB_00149 - Protein HokA, at 160,998 to 161,150
_00149
OHPLBJKB_00150: OHPLBJKB_00150 - Cold shock protein CspA, at 161,337 to 161,549
_00150
OHPLBJKB_00151: OHPLBJKB_00151 - hypothetical protein, at 161,830 to 162,120
_00151
Position (kb)
160
161
162 Strain fitness (log2 ratio)
-2
-1
0
1 at 160.073 kb on + strand at 160.074 kb on - strand at 160.074 kb on - strand at 160.074 kb on - strand at 160.103 kb on - strand at 160.137 kb on - strand at 160.173 kb on - strand at 160.173 kb on - strand at 160.259 kb on + strand at 160.263 kb on - strand at 160.263 kb on - strand at 160.263 kb on - strand at 160.282 kb on + strand at 160.283 kb on - strand at 160.283 kb on - strand at 160.283 kb on - strand at 160.309 kb on - strand at 160.309 kb on - strand at 160.309 kb on - strand at 160.318 kb on + strand at 160.318 kb on + strand at 160.319 kb on - strand at 160.381 kb on - strand at 160.419 kb on - strand at 160.436 kb on + strand at 160.440 kb on + strand at 160.440 kb on + strand at 160.440 kb on + strand at 160.440 kb on + strand at 160.440 kb on + strand at 160.441 kb on - strand at 160.441 kb on - strand at 160.444 kb on + strand at 160.444 kb on + strand at 160.444 kb on + strand at 160.444 kb on + strand at 160.444 kb on + strand at 160.445 kb on - strand at 160.609 kb on - strand, within OHPLBJKB_00148 at 160.640 kb on - strand, within OHPLBJKB_00148 at 160.640 kb on - strand, within OHPLBJKB_00148 at 160.651 kb on + strand, within OHPLBJKB_00148 at 160.711 kb on + strand, within OHPLBJKB_00148 at 160.712 kb on - strand, within OHPLBJKB_00148 at 160.712 kb on - strand, within OHPLBJKB_00148 at 160.715 kb on - strand, within OHPLBJKB_00148 at 160.736 kb on - strand, within OHPLBJKB_00148 at 160.744 kb on + strand, within OHPLBJKB_00148 at 160.757 kb on + strand, within OHPLBJKB_00148 at 160.867 kb on - strand at 160.867 kb on - strand at 160.963 kb on - strand at 161.096 kb on + strand, within OHPLBJKB_00149 at 161.096 kb on + strand, within OHPLBJKB_00149 at 161.149 kb on - strand at 161.217 kb on + strand at 161.239 kb on - strand at 161.426 kb on - strand, within OHPLBJKB_00150 at 161.455 kb on - strand, within OHPLBJKB_00150 at 161.455 kb on - strand, within OHPLBJKB_00150 at 161.549 kb on + strand at 161.549 kb on + strand at 161.549 kb on + strand at 161.549 kb on + strand at 161.549 kb on + strand at 161.549 kb on + strand at 161.549 kb on + strand at 161.550 kb on - strand at 161.550 kb on - strand at 161.550 kb on - strand at 161.550 kb on - strand at 161.550 kb on - strand at 161.550 kb on - strand at 161.550 kb on - strand at 161.550 kb on - strand at 161.550 kb on - strand at 161.554 kb on + strand at 161.554 kb on + strand at 161.554 kb on + strand at 161.555 kb on - strand at 161.555 kb on - strand at 161.557 kb on + strand at 161.557 kb on + strand at 161.558 kb on - strand at 161.558 kb on - strand at 161.567 kb on - strand at 161.570 kb on + strand at 161.570 kb on + strand at 161.570 kb on + strand at 161.570 kb on + strand at 161.570 kb on + strand at 161.570 kb on + strand at 161.571 kb on - strand at 161.571 kb on - strand at 161.571 kb on - strand at 161.571 kb on - strand at 161.677 kb on - strand at 161.677 kb on - strand at 161.677 kb on - strand at 161.677 kb on - strand at 161.763 kb on + strand at 161.848 kb on - strand at 161.852 kb on - strand at 161.887 kb on + strand, within OHPLBJKB_00151 at 161.887 kb on + strand, within OHPLBJKB_00151 at 161.887 kb on + strand, within OHPLBJKB_00151 at 161.887 kb on + strand, within OHPLBJKB_00151 at 161.888 kb on - strand, within OHPLBJKB_00151 at 161.933 kb on - strand, within OHPLBJKB_00151 at 162.111 kb on + strand at 162.111 kb on + strand at 162.112 kb on - strand at 162.112 kb on - strand at 162.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 160,073 + +0.1 160,074 - -0.2 160,074 - -0.2 160,074 - -0.5 160,103 - -1.9 160,137 - -1.0 160,173 - -0.2 160,173 - -0.1 160,259 + +0.8 160,263 - -1.2 160,263 - +0.9 160,263 - -0.7 160,282 + -0.3 160,283 - -0.2 160,283 - -1.3 160,283 - -0.8 160,309 - +0.1 160,309 - +0.1 160,309 - -1.5 160,318 + -0.1 160,318 + -0.7 160,319 - -1.0 160,381 - +0.4 160,419 - +0.4 160,436 + +0.0 160,440 + -0.2 160,440 + +0.1 160,440 + +0.5 160,440 + -0.5 160,440 + -0.3 160,441 - +0.6 160,441 - +1.0 160,444 + +0.1 160,444 + +0.6 160,444 + +0.2 160,444 + -1.2 160,444 + -0.1 160,445 - -0.9 160,609 - OHPLBJKB_00148 0.41 +0.1 160,640 - OHPLBJKB_00148 0.47 -0.3 160,640 - OHPLBJKB_00148 0.47 +0.1 160,651 + OHPLBJKB_00148 0.49 +0.3 160,711 + OHPLBJKB_00148 0.60 +1.0 160,712 - OHPLBJKB_00148 0.60 -0.5 160,712 - OHPLBJKB_00148 0.60 -1.1 160,715 - OHPLBJKB_00148 0.61 -0.7 160,736 - OHPLBJKB_00148 0.65 +0.1 160,744 + OHPLBJKB_00148 0.66 +0.9 160,757 + OHPLBJKB_00148 0.69 -1.1 160,867 - +0.5 160,867 - -0.9 160,963 - +0.8 161,096 + OHPLBJKB_00149 0.64 -0.4 161,096 + OHPLBJKB_00149 0.64 -2.3 161,149 - -0.3 161,217 + -0.6 161,239 - -1.3 161,426 - OHPLBJKB_00150 0.42 -1.5 161,455 - OHPLBJKB_00150 0.55 +1.5 161,455 - OHPLBJKB_00150 0.55 -0.1 161,549 + -0.9 161,549 + -0.7 161,549 + +0.1 161,549 + +0.7 161,549 + +1.4 161,549 + +0.2 161,549 + +0.7 161,550 - -0.3 161,550 - +0.6 161,550 - +0.1 161,550 - -0.1 161,550 - +0.9 161,550 - -0.0 161,550 - -0.5 161,550 - +0.7 161,550 - -0.7 161,554 + -0.5 161,554 + +1.5 161,554 + -2.1 161,555 - -1.1 161,555 - -1.6 161,557 + -0.5 161,557 + -0.3 161,558 - -1.1 161,558 - +0.9 161,567 - -1.3 161,570 + -0.6 161,570 + -0.5 161,570 + -0.3 161,570 + -0.6 161,570 + +1.1 161,570 + +0.5 161,571 - +1.7 161,571 - +0.5 161,571 - -0.7 161,571 - -0.2 161,677 - -0.1 161,677 - +0.2 161,677 - +0.2 161,677 - +0.4 161,763 + -0.2 161,848 - +0.5 161,852 - -0.5 161,887 + OHPLBJKB_00151 0.20 -0.2 161,887 + OHPLBJKB_00151 0.20 +0.5 161,887 + OHPLBJKB_00151 0.20 -0.3 161,887 + OHPLBJKB_00151 0.20 -0.2 161,888 - OHPLBJKB_00151 0.20 -0.2 161,933 - OHPLBJKB_00151 0.35 +1.5 162,111 + -0.9 162,111 + -0.6 162,112 - -0.2 162,112 - +1.2 162,112 - -0.2
Or see this region's nucleotide sequence