Experiment: B-glucan from yeast 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS16965 and HMPREF1181_RS16970 are separated by 39 nucleotides HMPREF1181_RS16970 and HMPREF1181_RS16975 are separated by 25 nucleotides
HMPREF1181_RS16965: HMPREF1181_RS16965 - carboxypeptidase-like regulatory domain-containing protein, at 109,378 to 111,963
_RS16965
HMPREF1181_RS16970: HMPREF1181_RS16970 - four helix bundle protein, at 112,003 to 112,368
_RS16970
HMPREF1181_RS16975: HMPREF1181_RS16975 - replication-associated recombination protein A, at 112,394 to 113,662
_RS16975
Position (kb) 112
113 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 111.045 kb on + strand, within HMPREF1181_RS16965 at 111.046 kb on - strand, within HMPREF1181_RS16965 at 111.046 kb on - strand, within HMPREF1181_RS16965 at 111.089 kb on - strand, within HMPREF1181_RS16965 at 111.240 kb on + strand, within HMPREF1181_RS16965 at 111.546 kb on - strand, within HMPREF1181_RS16965 at 111.550 kb on + strand, within HMPREF1181_RS16965 at 111.550 kb on + strand, within HMPREF1181_RS16965 at 111.551 kb on - strand, within HMPREF1181_RS16965 at 111.853 kb on + strand at 111.854 kb on - strand at 111.877 kb on - strand at 111.879 kb on - strand at 111.883 kb on + strand at 111.884 kb on - strand at 111.901 kb on + strand at 111.902 kb on - strand at 111.943 kb on - strand at 111.956 kb on + strand at 111.962 kb on - strand at 111.965 kb on + strand at 112.002 kb on + strand at 112.003 kb on - strand at 112.019 kb on + strand at 112.020 kb on - strand at 112.047 kb on - strand, within HMPREF1181_RS16970 at 112.062 kb on - strand, within HMPREF1181_RS16970 at 112.098 kb on + strand, within HMPREF1181_RS16970 at 112.098 kb on + strand, within HMPREF1181_RS16970 at 112.099 kb on - strand, within HMPREF1181_RS16970 at 112.113 kb on - strand, within HMPREF1181_RS16970 at 112.113 kb on - strand, within HMPREF1181_RS16970 at 112.115 kb on + strand, within HMPREF1181_RS16970 at 112.116 kb on - strand, within HMPREF1181_RS16970 at 112.126 kb on - strand, within HMPREF1181_RS16970 at 112.183 kb on - strand, within HMPREF1181_RS16970 at 112.244 kb on + strand, within HMPREF1181_RS16970 at 112.248 kb on + strand, within HMPREF1181_RS16970 at 112.249 kb on - strand, within HMPREF1181_RS16970 at 112.258 kb on + strand, within HMPREF1181_RS16970 at 112.277 kb on - strand, within HMPREF1181_RS16970 at 112.442 kb on - strand at 112.564 kb on + strand, within HMPREF1181_RS16975 at 112.566 kb on + strand, within HMPREF1181_RS16975 at 112.838 kb on + strand, within HMPREF1181_RS16975 at 112.926 kb on + strand, within HMPREF1181_RS16975 at 112.927 kb on - strand, within HMPREF1181_RS16975 at 113.109 kb on - strand, within HMPREF1181_RS16975 at 113.109 kb on - strand, within HMPREF1181_RS16975 at 113.357 kb on + strand, within HMPREF1181_RS16975 at 113.358 kb on - strand, within HMPREF1181_RS16975
Per-strain Table
Position Strand Gene LocusTag Fraction B-glucan from yeast 2.5 mg/mL (C) remove 111,045 + HMPREF1181_RS16965 0.64 -0.8 111,046 - HMPREF1181_RS16965 0.65 -0.9 111,046 - HMPREF1181_RS16965 0.65 -1.1 111,089 - HMPREF1181_RS16965 0.66 -1.1 111,240 + HMPREF1181_RS16965 0.72 -0.2 111,546 - HMPREF1181_RS16965 0.84 -2.6 111,550 + HMPREF1181_RS16965 0.84 -1.7 111,550 + HMPREF1181_RS16965 0.84 -2.6 111,551 - HMPREF1181_RS16965 0.84 -1.1 111,853 + -2.0 111,854 - -1.8 111,877 - -1.2 111,879 - -0.2 111,883 + +0.5 111,884 - -2.9 111,901 + -1.1 111,902 - -1.5 111,943 - -1.1 111,956 + -3.2 111,962 - -0.6 111,965 + -1.4 112,002 + -0.6 112,003 - -0.4 112,019 + +0.0 112,020 - -1.6 112,047 - HMPREF1181_RS16970 0.12 -0.6 112,062 - HMPREF1181_RS16970 0.16 +1.1 112,098 + HMPREF1181_RS16970 0.26 -0.6 112,098 + HMPREF1181_RS16970 0.26 +1.2 112,099 - HMPREF1181_RS16970 0.26 -1.2 112,113 - HMPREF1181_RS16970 0.30 -0.9 112,113 - HMPREF1181_RS16970 0.30 +1.0 112,115 + HMPREF1181_RS16970 0.31 -0.2 112,116 - HMPREF1181_RS16970 0.31 +0.3 112,126 - HMPREF1181_RS16970 0.34 -0.1 112,183 - HMPREF1181_RS16970 0.49 -0.5 112,244 + HMPREF1181_RS16970 0.66 -1.9 112,248 + HMPREF1181_RS16970 0.67 -1.2 112,249 - HMPREF1181_RS16970 0.67 +1.3 112,258 + HMPREF1181_RS16970 0.70 -0.3 112,277 - HMPREF1181_RS16970 0.75 +0.2 112,442 - -0.1 112,564 + HMPREF1181_RS16975 0.13 +0.6 112,566 + HMPREF1181_RS16975 0.14 +1.0 112,838 + HMPREF1181_RS16975 0.35 +0.5 112,926 + HMPREF1181_RS16975 0.42 -0.2 112,927 - HMPREF1181_RS16975 0.42 +0.5 113,109 - HMPREF1181_RS16975 0.56 +0.9 113,109 - HMPREF1181_RS16975 0.56 +0.9 113,357 + HMPREF1181_RS16975 0.76 -3.3 113,358 - HMPREF1181_RS16975 0.76 -0.0
Or see this region's nucleotide sequence