Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS16170

Experiment: B-glucan from yeast 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS16165 and HMPREF1181_RS16170 overlap by 14 nucleotidesHMPREF1181_RS16170 and HMPREF1181_RS16175 are separated by 94 nucleotides HMPREF1181_RS16165: HMPREF1181_RS16165 - PH domain-containing protein, at 64,324 to 64,839 _RS16165 HMPREF1181_RS16170: HMPREF1181_RS16170 - PH domain-containing protein, at 64,826 to 66,322 _RS16170 HMPREF1181_RS16175: HMPREF1181_RS16175 - long-chain fatty acid--CoA ligase, at 66,417 to 68,084 _RS16175 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2 3at 63.834 kb on + strandat 63.866 kb on - strandat 63.883 kb on - strandat 63.975 kb on + strandat 64.053 kb on - strandat 64.168 kb on - strandat 64.233 kb on + strandat 64.262 kb on + strandat 64.262 kb on + strandat 64.298 kb on + strandat 64.302 kb on - strandat 64.318 kb on + strandat 64.319 kb on - strandat 64.324 kb on - strandat 64.332 kb on + strandat 64.375 kb on - strandat 64.378 kb on + strand, within HMPREF1181_RS16165at 64.379 kb on - strand, within HMPREF1181_RS16165at 64.379 kb on - strand, within HMPREF1181_RS16165at 64.380 kb on + strand, within HMPREF1181_RS16165at 64.381 kb on - strand, within HMPREF1181_RS16165at 64.400 kb on - strand, within HMPREF1181_RS16165at 64.436 kb on - strand, within HMPREF1181_RS16165at 64.506 kb on + strand, within HMPREF1181_RS16165at 64.545 kb on + strand, within HMPREF1181_RS16165at 64.570 kb on + strand, within HMPREF1181_RS16165at 64.570 kb on + strand, within HMPREF1181_RS16165at 64.577 kb on - strand, within HMPREF1181_RS16165at 64.606 kb on - strand, within HMPREF1181_RS16165at 64.696 kb on - strand, within HMPREF1181_RS16165at 64.696 kb on - strand, within HMPREF1181_RS16165at 64.714 kb on + strand, within HMPREF1181_RS16165at 64.811 kb on + strandat 64.972 kb on + strandat 65.064 kb on - strand, within HMPREF1181_RS16170at 65.064 kb on - strand, within HMPREF1181_RS16170at 65.128 kb on - strand, within HMPREF1181_RS16170at 65.188 kb on + strand, within HMPREF1181_RS16170at 65.199 kb on + strand, within HMPREF1181_RS16170at 65.310 kb on + strand, within HMPREF1181_RS16170at 65.310 kb on + strand, within HMPREF1181_RS16170at 65.329 kb on + strand, within HMPREF1181_RS16170at 65.354 kb on + strand, within HMPREF1181_RS16170at 65.355 kb on - strand, within HMPREF1181_RS16170at 65.355 kb on - strand, within HMPREF1181_RS16170at 65.433 kb on + strand, within HMPREF1181_RS16170at 65.433 kb on + strand, within HMPREF1181_RS16170at 65.434 kb on - strand, within HMPREF1181_RS16170at 65.434 kb on - strand, within HMPREF1181_RS16170at 65.457 kb on + strand, within HMPREF1181_RS16170at 65.458 kb on - strand, within HMPREF1181_RS16170at 65.511 kb on - strand, within HMPREF1181_RS16170at 65.557 kb on + strand, within HMPREF1181_RS16170at 65.557 kb on + strand, within HMPREF1181_RS16170at 65.558 kb on - strand, within HMPREF1181_RS16170at 65.579 kb on + strand, within HMPREF1181_RS16170at 65.583 kb on + strand, within HMPREF1181_RS16170at 65.584 kb on - strand, within HMPREF1181_RS16170at 65.588 kb on - strand, within HMPREF1181_RS16170at 65.595 kb on + strand, within HMPREF1181_RS16170at 65.596 kb on - strand, within HMPREF1181_RS16170at 65.598 kb on + strand, within HMPREF1181_RS16170at 65.609 kb on - strand, within HMPREF1181_RS16170at 65.640 kb on + strand, within HMPREF1181_RS16170at 65.640 kb on + strand, within HMPREF1181_RS16170at 65.641 kb on - strand, within HMPREF1181_RS16170at 65.641 kb on - strand, within HMPREF1181_RS16170at 65.645 kb on - strand, within HMPREF1181_RS16170at 65.647 kb on - strand, within HMPREF1181_RS16170at 65.713 kb on + strand, within HMPREF1181_RS16170at 65.731 kb on + strand, within HMPREF1181_RS16170at 65.743 kb on + strand, within HMPREF1181_RS16170at 65.743 kb on + strand, within HMPREF1181_RS16170at 65.776 kb on + strand, within HMPREF1181_RS16170at 65.834 kb on + strand, within HMPREF1181_RS16170at 65.886 kb on - strand, within HMPREF1181_RS16170at 65.886 kb on - strand, within HMPREF1181_RS16170at 65.934 kb on + strand, within HMPREF1181_RS16170at 65.940 kb on - strand, within HMPREF1181_RS16170at 65.941 kb on + strand, within HMPREF1181_RS16170at 66.006 kb on - strand, within HMPREF1181_RS16170at 66.032 kb on + strand, within HMPREF1181_RS16170at 66.101 kb on + strand, within HMPREF1181_RS16170at 66.102 kb on - strand, within HMPREF1181_RS16170at 66.185 kb on - strandat 66.185 kb on - strandat 66.185 kb on - strandat 66.252 kb on + strandat 66.304 kb on + strandat 66.305 kb on - strandat 66.305 kb on - strandat 66.311 kb on + strandat 66.362 kb on - strandat 66.373 kb on + strandat 66.374 kb on - strandat 66.374 kb on - strandat 66.374 kb on - strandat 66.375 kb on + strandat 66.437 kb on - strandat 66.437 kb on - strandat 66.437 kb on - strandat 66.441 kb on - strandat 66.515 kb on - strandat 66.568 kb on - strandat 66.568 kb on - strandat 66.648 kb on + strand, within HMPREF1181_RS16175at 66.648 kb on + strand, within HMPREF1181_RS16175at 66.671 kb on - strand, within HMPREF1181_RS16175at 66.825 kb on + strand, within HMPREF1181_RS16175at 66.856 kb on + strand, within HMPREF1181_RS16175at 66.856 kb on + strand, within HMPREF1181_RS16175at 66.859 kb on + strand, within HMPREF1181_RS16175at 66.870 kb on - strand, within HMPREF1181_RS16175at 66.870 kb on - strand, within HMPREF1181_RS16175at 66.870 kb on - strand, within HMPREF1181_RS16175at 66.870 kb on - strand, within HMPREF1181_RS16175at 66.927 kb on + strand, within HMPREF1181_RS16175at 66.928 kb on - strand, within HMPREF1181_RS16175at 66.933 kb on + strand, within HMPREF1181_RS16175at 67.051 kb on - strand, within HMPREF1181_RS16175at 67.204 kb on - strand, within HMPREF1181_RS16175at 67.215 kb on + strand, within HMPREF1181_RS16175at 67.216 kb on - strand, within HMPREF1181_RS16175at 67.251 kb on + strand, within HMPREF1181_RS16175

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Per-strain Table

Position Strand Gene LocusTag Fraction B-glucan from yeast 2.5 mg/mL (C)
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63,834 + -0.5
63,866 - +1.1
63,883 - +0.2
63,975 + +0.5
64,053 - -1.6
64,168 - -0.3
64,233 + +0.9
64,262 + -0.8
64,262 + -0.6
64,298 + +0.4
64,302 - -1.6
64,318 + -0.4
64,319 - -0.2
64,324 - -0.3
64,332 + -1.1
64,375 - -0.6
64,378 + HMPREF1181_RS16165 0.10 -1.3
64,379 - HMPREF1181_RS16165 0.11 +0.1
64,379 - HMPREF1181_RS16165 0.11 +0.2
64,380 + HMPREF1181_RS16165 0.11 +0.1
64,381 - HMPREF1181_RS16165 0.11 -2.6
64,400 - HMPREF1181_RS16165 0.15 +0.4
64,436 - HMPREF1181_RS16165 0.22 +0.5
64,506 + HMPREF1181_RS16165 0.35 +0.8
64,545 + HMPREF1181_RS16165 0.43 -1.0
64,570 + HMPREF1181_RS16165 0.48 -1.4
64,570 + HMPREF1181_RS16165 0.48 +0.8
64,577 - HMPREF1181_RS16165 0.49 +0.5
64,606 - HMPREF1181_RS16165 0.55 -0.3
64,696 - HMPREF1181_RS16165 0.72 -0.1
64,696 - HMPREF1181_RS16165 0.72 -0.5
64,714 + HMPREF1181_RS16165 0.76 -1.5
64,811 + -0.3
64,972 + -0.4
65,064 - HMPREF1181_RS16170 0.16 -0.5
65,064 - HMPREF1181_RS16170 0.16 -0.6
65,128 - HMPREF1181_RS16170 0.20 -0.9
65,188 + HMPREF1181_RS16170 0.24 -0.2
65,199 + HMPREF1181_RS16170 0.25 -0.0
65,310 + HMPREF1181_RS16170 0.32 -1.4
65,310 + HMPREF1181_RS16170 0.32 -1.4
65,329 + HMPREF1181_RS16170 0.34 +0.3
65,354 + HMPREF1181_RS16170 0.35 +0.7
65,355 - HMPREF1181_RS16170 0.35 -0.1
65,355 - HMPREF1181_RS16170 0.35 +0.3
65,433 + HMPREF1181_RS16170 0.41 -0.4
65,433 + HMPREF1181_RS16170 0.41 -0.8
65,434 - HMPREF1181_RS16170 0.41 +0.4
65,434 - HMPREF1181_RS16170 0.41 -1.3
65,457 + HMPREF1181_RS16170 0.42 +0.2
65,458 - HMPREF1181_RS16170 0.42 +0.5
65,511 - HMPREF1181_RS16170 0.46 -0.7
65,557 + HMPREF1181_RS16170 0.49 -0.9
65,557 + HMPREF1181_RS16170 0.49 +0.6
65,558 - HMPREF1181_RS16170 0.49 -0.1
65,579 + HMPREF1181_RS16170 0.50 +0.8
65,583 + HMPREF1181_RS16170 0.51 -0.4
65,584 - HMPREF1181_RS16170 0.51 +1.0
65,588 - HMPREF1181_RS16170 0.51 -0.5
65,595 + HMPREF1181_RS16170 0.51 -0.9
65,596 - HMPREF1181_RS16170 0.51 -2.1
65,598 + HMPREF1181_RS16170 0.52 +0.1
65,609 - HMPREF1181_RS16170 0.52 -0.6
65,640 + HMPREF1181_RS16170 0.54 +0.4
65,640 + HMPREF1181_RS16170 0.54 -0.4
65,641 - HMPREF1181_RS16170 0.54 -0.4
65,641 - HMPREF1181_RS16170 0.54 +1.1
65,645 - HMPREF1181_RS16170 0.55 -0.3
65,647 - HMPREF1181_RS16170 0.55 -1.3
65,713 + HMPREF1181_RS16170 0.59 +0.6
65,731 + HMPREF1181_RS16170 0.60 -0.2
65,743 + HMPREF1181_RS16170 0.61 -0.5
65,743 + HMPREF1181_RS16170 0.61 -0.6
65,776 + HMPREF1181_RS16170 0.63 -0.6
65,834 + HMPREF1181_RS16170 0.67 +1.3
65,886 - HMPREF1181_RS16170 0.71 -0.3
65,886 - HMPREF1181_RS16170 0.71 -0.8
65,934 + HMPREF1181_RS16170 0.74 +0.3
65,940 - HMPREF1181_RS16170 0.74 -0.5
65,941 + HMPREF1181_RS16170 0.74 +0.3
66,006 - HMPREF1181_RS16170 0.79 +0.2
66,032 + HMPREF1181_RS16170 0.81 -0.6
66,101 + HMPREF1181_RS16170 0.85 -0.4
66,102 - HMPREF1181_RS16170 0.85 -0.3
66,185 - +0.2
66,185 - +0.5
66,185 - -1.5
66,252 + +0.9
66,304 + +0.2
66,305 - +0.1
66,305 - +0.8
66,311 + +1.2
66,362 - -2.2
66,373 + -0.9
66,374 - +0.6
66,374 - -1.1
66,374 - -0.4
66,375 + -0.2
66,437 - -0.4
66,437 - -0.5
66,437 - -1.6
66,441 - +0.2
66,515 - -1.4
66,568 - -0.6
66,568 - +0.7
66,648 + HMPREF1181_RS16175 0.14 +0.1
66,648 + HMPREF1181_RS16175 0.14 -1.6
66,671 - HMPREF1181_RS16175 0.15 +0.2
66,825 + HMPREF1181_RS16175 0.24 +0.7
66,856 + HMPREF1181_RS16175 0.26 -1.9
66,856 + HMPREF1181_RS16175 0.26 +1.2
66,859 + HMPREF1181_RS16175 0.26 +0.5
66,870 - HMPREF1181_RS16175 0.27 +3.1
66,870 - HMPREF1181_RS16175 0.27 -0.1
66,870 - HMPREF1181_RS16175 0.27 -1.9
66,870 - HMPREF1181_RS16175 0.27 +0.6
66,927 + HMPREF1181_RS16175 0.31 -0.2
66,928 - HMPREF1181_RS16175 0.31 +0.5
66,933 + HMPREF1181_RS16175 0.31 +0.3
67,051 - HMPREF1181_RS16175 0.38 -0.4
67,204 - HMPREF1181_RS16175 0.47 -0.5
67,215 + HMPREF1181_RS16175 0.48 -1.5
67,216 - HMPREF1181_RS16175 0.48 -1.3
67,251 + HMPREF1181_RS16175 0.50 +0.1

Or see this region's nucleotide sequence