Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04885 and OLJFJH_04890 are separated by 428 nucleotides OLJFJH_04890 and OLJFJH_04895 are separated by 308 nucleotides OLJFJH_04895 and OLJFJH_04900 are separated by 98 nucleotides
OLJFJH_04885: OLJFJH_04885 - hypothetical protein, at 967,624 to 968,082
_04885
OLJFJH_04890: OLJFJH_04890 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 968,511 to 970,178
_04890
OLJFJH_04895: OLJFJH_04895 - organic hydroperoxide resistance protein, at 970,487 to 970,915
_04895
OLJFJH_04900: OLJFJH_04900 - MarR family transcriptional regulator, at 971,014 to 971,481
_04900
Position (kb) 968
969
970
971 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 967.571 kb on + strand at 967.571 kb on + strand at 967.572 kb on - strand at 967.764 kb on + strand, within OLJFJH_04885 at 967.866 kb on + strand, within OLJFJH_04885 at 967.869 kb on - strand, within OLJFJH_04885 at 967.912 kb on + strand, within OLJFJH_04885 at 967.996 kb on + strand, within OLJFJH_04885 at 967.997 kb on - strand, within OLJFJH_04885 at 967.997 kb on - strand, within OLJFJH_04885 at 967.997 kb on - strand, within OLJFJH_04885 at 968.057 kb on - strand at 968.134 kb on - strand at 968.377 kb on + strand at 968.416 kb on + strand at 968.417 kb on - strand at 968.531 kb on + strand at 968.531 kb on + strand at 968.534 kb on + strand at 968.534 kb on + strand at 968.535 kb on - strand at 968.545 kb on - strand at 968.640 kb on + strand at 968.641 kb on - strand at 968.641 kb on - strand at 968.660 kb on + strand at 968.660 kb on + strand at 968.680 kb on + strand, within OLJFJH_04890 at 968.680 kb on + strand, within OLJFJH_04890 at 968.680 kb on + strand, within OLJFJH_04890 at 968.680 kb on + strand, within OLJFJH_04890 at 968.680 kb on + strand, within OLJFJH_04890 at 968.680 kb on + strand, within OLJFJH_04890 at 968.681 kb on - strand, within OLJFJH_04890 at 968.681 kb on - strand, within OLJFJH_04890 at 968.681 kb on - strand, within OLJFJH_04890 at 968.701 kb on - strand, within OLJFJH_04890 at 968.736 kb on - strand, within OLJFJH_04890 at 968.763 kb on - strand, within OLJFJH_04890 at 968.860 kb on + strand, within OLJFJH_04890 at 968.879 kb on - strand, within OLJFJH_04890 at 968.925 kb on - strand, within OLJFJH_04890 at 968.977 kb on + strand, within OLJFJH_04890 at 968.978 kb on - strand, within OLJFJH_04890 at 968.978 kb on - strand, within OLJFJH_04890 at 969.000 kb on + strand, within OLJFJH_04890 at 969.066 kb on - strand, within OLJFJH_04890 at 969.089 kb on + strand, within OLJFJH_04890 at 969.089 kb on + strand, within OLJFJH_04890 at 969.089 kb on + strand, within OLJFJH_04890 at 969.089 kb on + strand, within OLJFJH_04890 at 969.090 kb on - strand, within OLJFJH_04890 at 969.188 kb on + strand, within OLJFJH_04890 at 969.188 kb on + strand, within OLJFJH_04890 at 969.188 kb on + strand, within OLJFJH_04890 at 969.433 kb on + strand, within OLJFJH_04890 at 969.433 kb on + strand, within OLJFJH_04890 at 969.433 kb on + strand, within OLJFJH_04890 at 969.433 kb on + strand, within OLJFJH_04890 at 969.433 kb on + strand, within OLJFJH_04890 at 969.433 kb on + strand, within OLJFJH_04890 at 969.434 kb on - strand, within OLJFJH_04890 at 969.434 kb on - strand, within OLJFJH_04890 at 969.434 kb on - strand, within OLJFJH_04890 at 969.437 kb on + strand, within OLJFJH_04890 at 969.437 kb on + strand, within OLJFJH_04890 at 969.444 kb on + strand, within OLJFJH_04890 at 969.464 kb on - strand, within OLJFJH_04890 at 969.507 kb on - strand, within OLJFJH_04890 at 969.517 kb on + strand, within OLJFJH_04890 at 969.526 kb on + strand, within OLJFJH_04890 at 969.527 kb on - strand, within OLJFJH_04890 at 969.568 kb on + strand, within OLJFJH_04890 at 969.569 kb on - strand, within OLJFJH_04890 at 969.569 kb on - strand, within OLJFJH_04890 at 969.612 kb on - strand, within OLJFJH_04890 at 969.612 kb on - strand, within OLJFJH_04890 at 969.612 kb on - strand, within OLJFJH_04890 at 969.772 kb on - strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.908 kb on - strand, within OLJFJH_04890 at 969.908 kb on - strand, within OLJFJH_04890 at 969.908 kb on - strand, within OLJFJH_04890 at 969.908 kb on - strand, within OLJFJH_04890 at 969.911 kb on - strand, within OLJFJH_04890 at 970.090 kb on + strand at 970.123 kb on + strand at 970.124 kb on - strand at 970.124 kb on - strand at 970.186 kb on + strand at 970.186 kb on + strand at 970.248 kb on + strand at 970.249 kb on - strand at 970.294 kb on + strand at 970.347 kb on + strand at 970.351 kb on + strand at 970.357 kb on + strand at 970.357 kb on + strand at 970.358 kb on - strand at 970.358 kb on - strand at 970.358 kb on - strand at 970.358 kb on - strand at 970.413 kb on - strand at 970.437 kb on - strand at 970.472 kb on + strand at 970.472 kb on + strand at 970.472 kb on + strand at 970.472 kb on + strand at 970.488 kb on + strand at 970.488 kb on + strand at 970.488 kb on + strand at 970.489 kb on - strand at 970.489 kb on - strand at 970.535 kb on - strand, within OLJFJH_04895 at 970.535 kb on - strand, within OLJFJH_04895 at 970.552 kb on + strand, within OLJFJH_04895 at 970.812 kb on - strand, within OLJFJH_04895 at 970.891 kb on + strand at 970.915 kb on + strand at 970.915 kb on + strand at 970.915 kb on + strand at 970.916 kb on - strand at 970.980 kb on + strand at 970.980 kb on + strand at 970.985 kb on - strand at 970.985 kb on - strand at 970.988 kb on + strand at 970.988 kb on + strand at 970.994 kb on - strand at 971.022 kb on + strand at 971.022 kb on + strand at 971.036 kb on - strand at 971.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-7 remove 967,571 + -0.7 967,571 + -0.5 967,572 - +0.5 967,764 + OLJFJH_04885 0.31 +0.4 967,866 + OLJFJH_04885 0.53 +0.3 967,869 - OLJFJH_04885 0.53 +0.1 967,912 + OLJFJH_04885 0.63 -1.0 967,996 + OLJFJH_04885 0.81 -0.4 967,997 - OLJFJH_04885 0.81 -0.1 967,997 - OLJFJH_04885 0.81 -0.3 967,997 - OLJFJH_04885 0.81 -0.4 968,057 - +0.1 968,134 - -0.6 968,377 + -0.3 968,416 + +0.2 968,417 - -0.1 968,531 + +1.0 968,531 + +0.7 968,534 + -0.2 968,534 + -0.6 968,535 - +1.3 968,545 - +0.8 968,640 + +0.2 968,641 - +0.7 968,641 - +1.8 968,660 + +0.0 968,660 + -0.3 968,680 + OLJFJH_04890 0.10 +1.3 968,680 + OLJFJH_04890 0.10 +0.5 968,680 + OLJFJH_04890 0.10 +0.7 968,680 + OLJFJH_04890 0.10 -1.9 968,680 + OLJFJH_04890 0.10 +0.5 968,680 + OLJFJH_04890 0.10 -0.7 968,681 - OLJFJH_04890 0.10 +0.3 968,681 - OLJFJH_04890 0.10 +1.6 968,681 - OLJFJH_04890 0.10 +0.9 968,701 - OLJFJH_04890 0.11 -0.5 968,736 - OLJFJH_04890 0.13 +0.3 968,763 - OLJFJH_04890 0.15 -0.6 968,860 + OLJFJH_04890 0.21 +0.8 968,879 - OLJFJH_04890 0.22 -0.8 968,925 - OLJFJH_04890 0.25 +0.7 968,977 + OLJFJH_04890 0.28 +0.6 968,978 - OLJFJH_04890 0.28 -0.5 968,978 - OLJFJH_04890 0.28 +0.5 969,000 + OLJFJH_04890 0.29 +1.1 969,066 - OLJFJH_04890 0.33 -0.2 969,089 + OLJFJH_04890 0.35 -0.2 969,089 + OLJFJH_04890 0.35 -1.6 969,089 + OLJFJH_04890 0.35 -0.8 969,089 + OLJFJH_04890 0.35 -0.1 969,090 - OLJFJH_04890 0.35 -1.0 969,188 + OLJFJH_04890 0.41 -0.5 969,188 + OLJFJH_04890 0.41 -0.7 969,188 + OLJFJH_04890 0.41 -0.2 969,433 + OLJFJH_04890 0.55 +0.5 969,433 + OLJFJH_04890 0.55 +1.0 969,433 + OLJFJH_04890 0.55 -0.3 969,433 + OLJFJH_04890 0.55 -1.2 969,433 + OLJFJH_04890 0.55 +1.4 969,433 + OLJFJH_04890 0.55 -0.1 969,434 - OLJFJH_04890 0.55 -0.4 969,434 - OLJFJH_04890 0.55 -0.5 969,434 - OLJFJH_04890 0.55 +0.4 969,437 + OLJFJH_04890 0.56 -0.4 969,437 + OLJFJH_04890 0.56 +0.7 969,444 + OLJFJH_04890 0.56 -0.2 969,464 - OLJFJH_04890 0.57 -0.5 969,507 - OLJFJH_04890 0.60 -0.7 969,517 + OLJFJH_04890 0.60 +0.5 969,526 + OLJFJH_04890 0.61 +0.2 969,527 - OLJFJH_04890 0.61 -0.0 969,568 + OLJFJH_04890 0.63 +0.3 969,569 - OLJFJH_04890 0.63 +0.7 969,569 - OLJFJH_04890 0.63 +3.5 969,612 - OLJFJH_04890 0.66 +0.3 969,612 - OLJFJH_04890 0.66 +0.2 969,612 - OLJFJH_04890 0.66 +0.1 969,772 - OLJFJH_04890 0.76 +0.4 969,907 + OLJFJH_04890 0.84 +0.3 969,907 + OLJFJH_04890 0.84 +1.1 969,907 + OLJFJH_04890 0.84 -0.4 969,907 + OLJFJH_04890 0.84 +0.2 969,907 + OLJFJH_04890 0.84 +0.4 969,907 + OLJFJH_04890 0.84 +0.6 969,907 + OLJFJH_04890 0.84 +0.5 969,907 + OLJFJH_04890 0.84 +0.1 969,907 + OLJFJH_04890 0.84 -0.1 969,908 - OLJFJH_04890 0.84 +0.0 969,908 - OLJFJH_04890 0.84 +1.0 969,908 - OLJFJH_04890 0.84 +0.1 969,908 - OLJFJH_04890 0.84 +0.2 969,911 - OLJFJH_04890 0.84 -1.5 970,090 + -1.1 970,123 + +1.1 970,124 - -0.3 970,124 - -0.8 970,186 + -0.7 970,186 + -0.2 970,248 + +0.2 970,249 - +0.1 970,294 + +0.6 970,347 + +0.6 970,351 + +0.9 970,357 + -0.6 970,357 + +0.9 970,358 - -1.3 970,358 - -0.0 970,358 - -1.4 970,358 - -0.1 970,413 - -1.0 970,437 - -0.1 970,472 + +0.4 970,472 + -0.4 970,472 + -2.0 970,472 + -1.3 970,488 + -0.3 970,488 + -0.6 970,488 + +1.7 970,489 - +0.5 970,489 - +0.7 970,535 - OLJFJH_04895 0.11 +0.3 970,535 - OLJFJH_04895 0.11 -0.5 970,552 + OLJFJH_04895 0.15 +0.2 970,812 - OLJFJH_04895 0.76 +0.4 970,891 + +0.5 970,915 + -0.3 970,915 + +0.7 970,915 + -2.0 970,916 - +1.8 970,980 + +0.2 970,980 + +1.4 970,985 - +0.3 970,985 - +0.4 970,988 + -0.3 970,988 + +1.0 970,994 - -1.0 971,022 + +1.3 971,022 + +1.0 971,036 - -1.3 971,036 - -0.0
Or see this region's nucleotide sequence