Strain Fitness in Erwinia amylovora T8 around OLJFJH_03465

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03460 and OLJFJH_03465 are separated by 99 nucleotidesOLJFJH_03465 and OLJFJH_03470 are separated by 226 nucleotidesOLJFJH_03470 and OLJFJH_03475 are separated by 156 nucleotides OLJFJH_03460: OLJFJH_03460 - replicative DNA helicase, at 669,085 to 670,500 _03460 OLJFJH_03465: OLJFJH_03465 - quinone oxidoreductase, at 670,600 to 671,580 _03465 OLJFJH_03470: OLJFJH_03470 - envelope stress response protein PspG, at 671,807 to 672,040 _03470 OLJFJH_03475: OLJFJH_03475 - tRNA dihydrouridine(20/20a) synthase DusA, at 672,197 to 673,246 _03475 Position (kb) 670 671 672Strain fitness (log2 ratio) -2 -1 0 1at 670.542 kb on - strandat 670.544 kb on - strandat 670.583 kb on + strandat 670.612 kb on - strandat 670.692 kb on - strandat 670.727 kb on + strand, within OLJFJH_03465at 670.728 kb on - strand, within OLJFJH_03465at 670.728 kb on - strand, within OLJFJH_03465at 670.731 kb on + strand, within OLJFJH_03465at 670.732 kb on - strand, within OLJFJH_03465at 670.735 kb on + strand, within OLJFJH_03465at 670.800 kb on - strand, within OLJFJH_03465at 670.800 kb on - strand, within OLJFJH_03465at 670.833 kb on - strand, within OLJFJH_03465at 670.879 kb on + strand, within OLJFJH_03465at 670.879 kb on + strand, within OLJFJH_03465at 670.879 kb on + strand, within OLJFJH_03465at 670.984 kb on + strand, within OLJFJH_03465at 671.002 kb on + strand, within OLJFJH_03465at 671.002 kb on + strand, within OLJFJH_03465at 671.002 kb on + strand, within OLJFJH_03465at 671.002 kb on + strand, within OLJFJH_03465at 671.003 kb on - strand, within OLJFJH_03465at 671.003 kb on - strand, within OLJFJH_03465at 671.111 kb on + strand, within OLJFJH_03465at 671.111 kb on + strand, within OLJFJH_03465at 671.166 kb on - strand, within OLJFJH_03465at 671.236 kb on + strand, within OLJFJH_03465at 671.374 kb on + strand, within OLJFJH_03465at 671.375 kb on - strand, within OLJFJH_03465at 671.375 kb on - strand, within OLJFJH_03465at 671.375 kb on - strand, within OLJFJH_03465at 671.375 kb on - strand, within OLJFJH_03465at 671.406 kb on + strand, within OLJFJH_03465at 671.406 kb on + strand, within OLJFJH_03465at 671.407 kb on - strand, within OLJFJH_03465at 671.407 kb on - strand, within OLJFJH_03465at 671.473 kb on - strand, within OLJFJH_03465at 671.583 kb on + strandat 671.584 kb on - strandat 671.584 kb on - strandat 671.584 kb on - strandat 671.648 kb on + strandat 671.649 kb on - strandat 671.723 kb on - strandat 671.746 kb on + strandat 671.845 kb on + strand, within OLJFJH_03470at 671.846 kb on - strand, within OLJFJH_03470at 671.851 kb on - strand, within OLJFJH_03470at 672.229 kb on + strandat 672.229 kb on + strandat 672.360 kb on - strand, within OLJFJH_03475at 672.360 kb on - strand, within OLJFJH_03475at 672.363 kb on + strand, within OLJFJH_03475at 672.364 kb on - strand, within OLJFJH_03475at 672.391 kb on + strand, within OLJFJH_03475at 672.391 kb on + strand, within OLJFJH_03475at 672.391 kb on + strand, within OLJFJH_03475at 672.391 kb on + strand, within OLJFJH_03475at 672.392 kb on - strand, within OLJFJH_03475at 672.394 kb on - strand, within OLJFJH_03475at 672.394 kb on - strand, within OLJFJH_03475at 672.394 kb on - strand, within OLJFJH_03475at 672.394 kb on - strand, within OLJFJH_03475at 672.394 kb on - strand, within OLJFJH_03475at 672.400 kb on - strand, within OLJFJH_03475at 672.443 kb on - strand, within OLJFJH_03475at 672.443 kb on - strand, within OLJFJH_03475at 672.530 kb on + strand, within OLJFJH_03475at 672.530 kb on + strand, within OLJFJH_03475at 672.531 kb on - strand, within OLJFJH_03475at 672.560 kb on + strand, within OLJFJH_03475

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-7
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670,542 - -1.1
670,544 - +0.1
670,583 + +0.6
670,612 - -0.4
670,692 - +0.3
670,727 + OLJFJH_03465 0.13 -0.7
670,728 - OLJFJH_03465 0.13 +0.6
670,728 - OLJFJH_03465 0.13 -0.2
670,731 + OLJFJH_03465 0.13 +0.5
670,732 - OLJFJH_03465 0.13 -0.3
670,735 + OLJFJH_03465 0.14 -1.0
670,800 - OLJFJH_03465 0.20 +0.0
670,800 - OLJFJH_03465 0.20 -0.3
670,833 - OLJFJH_03465 0.24 +0.0
670,879 + OLJFJH_03465 0.28 +0.3
670,879 + OLJFJH_03465 0.28 -0.0
670,879 + OLJFJH_03465 0.28 +0.0
670,984 + OLJFJH_03465 0.39 -0.4
671,002 + OLJFJH_03465 0.41 -1.6
671,002 + OLJFJH_03465 0.41 -0.9
671,002 + OLJFJH_03465 0.41 +0.5
671,002 + OLJFJH_03465 0.41 -0.7
671,003 - OLJFJH_03465 0.41 +0.4
671,003 - OLJFJH_03465 0.41 +0.0
671,111 + OLJFJH_03465 0.52 -0.3
671,111 + OLJFJH_03465 0.52 -0.2
671,166 - OLJFJH_03465 0.58 -0.7
671,236 + OLJFJH_03465 0.65 +0.8
671,374 + OLJFJH_03465 0.79 -0.2
671,375 - OLJFJH_03465 0.79 -0.1
671,375 - OLJFJH_03465 0.79 +0.3
671,375 - OLJFJH_03465 0.79 -0.3
671,375 - OLJFJH_03465 0.79 -0.2
671,406 + OLJFJH_03465 0.82 +0.4
671,406 + OLJFJH_03465 0.82 -0.4
671,407 - OLJFJH_03465 0.82 -0.9
671,407 - OLJFJH_03465 0.82 +0.3
671,473 - OLJFJH_03465 0.89 +0.4
671,583 + +0.4
671,584 - -0.2
671,584 - +1.3
671,584 - +0.4
671,648 + -1.0
671,649 - +0.6
671,723 - -0.9
671,746 + -0.2
671,845 + OLJFJH_03470 0.16 +0.3
671,846 - OLJFJH_03470 0.17 +1.0
671,851 - OLJFJH_03470 0.19 +0.6
672,229 + +0.1
672,229 + -0.0
672,360 - OLJFJH_03475 0.16 -0.0
672,360 - OLJFJH_03475 0.16 +1.2
672,363 + OLJFJH_03475 0.16 +0.1
672,364 - OLJFJH_03475 0.16 -1.2
672,391 + OLJFJH_03475 0.18 -0.7
672,391 + OLJFJH_03475 0.18 -0.3
672,391 + OLJFJH_03475 0.18 -1.4
672,391 + OLJFJH_03475 0.18 -0.3
672,392 - OLJFJH_03475 0.19 -1.3
672,394 - OLJFJH_03475 0.19 -2.5
672,394 - OLJFJH_03475 0.19 +0.2
672,394 - OLJFJH_03475 0.19 +0.2
672,394 - OLJFJH_03475 0.19 -0.3
672,394 - OLJFJH_03475 0.19 -0.4
672,400 - OLJFJH_03475 0.19 -0.1
672,443 - OLJFJH_03475 0.23 -0.1
672,443 - OLJFJH_03475 0.23 -0.2
672,530 + OLJFJH_03475 0.32 -0.8
672,530 + OLJFJH_03475 0.32 +1.3
672,531 - OLJFJH_03475 0.32 -0.0
672,560 + OLJFJH_03475 0.35 -0.4

Or see this region's nucleotide sequence