Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS15570 and HMPREF1181_RS15575 are separated by 13 nucleotides HMPREF1181_RS15575 and HMPREF1181_RS15580 are separated by 37 nucleotides HMPREF1181_RS15580 and HMPREF1181_RS15585 are separated by 19 nucleotides
HMPREF1181_RS15570: HMPREF1181_RS15570 - FtsX-like permease family protein, at 65,782 to 67,059
_RS15570
HMPREF1181_RS15575: HMPREF1181_RS15575 - ABC transporter permease, at 67,073 to 68,347
_RS15575
HMPREF1181_RS15580: HMPREF1181_RS15580 - ABC transporter ATP-binding protein, at 68,385 to 69,050
_RS15580
HMPREF1181_RS15585: HMPREF1181_RS15585 - HlyD family efflux transporter periplasmic adaptor subunit, at 69,070 to 70,317
_RS15585
Position (kb) 67
68
69 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 66.186 kb on + strand, within HMPREF1181_RS15570 at 66.195 kb on + strand, within HMPREF1181_RS15570 at 66.241 kb on - strand, within HMPREF1181_RS15570 at 66.241 kb on - strand, within HMPREF1181_RS15570 at 66.267 kb on + strand, within HMPREF1181_RS15570 at 66.267 kb on + strand, within HMPREF1181_RS15570 at 66.268 kb on - strand, within HMPREF1181_RS15570 at 66.293 kb on - strand, within HMPREF1181_RS15570 at 66.547 kb on - strand, within HMPREF1181_RS15570 at 66.548 kb on + strand, within HMPREF1181_RS15570 at 66.581 kb on + strand, within HMPREF1181_RS15570 at 66.663 kb on + strand, within HMPREF1181_RS15570 at 66.664 kb on - strand, within HMPREF1181_RS15570 at 66.664 kb on - strand, within HMPREF1181_RS15570 at 66.682 kb on + strand, within HMPREF1181_RS15570 at 66.729 kb on + strand, within HMPREF1181_RS15570 at 66.888 kb on - strand, within HMPREF1181_RS15570 at 66.898 kb on + strand, within HMPREF1181_RS15570 at 66.898 kb on + strand, within HMPREF1181_RS15570 at 66.905 kb on + strand, within HMPREF1181_RS15570 at 66.920 kb on + strand, within HMPREF1181_RS15570 at 66.928 kb on - strand, within HMPREF1181_RS15570 at 67.033 kb on - strand at 67.046 kb on - strand at 67.046 kb on - strand at 67.049 kb on - strand at 67.102 kb on + strand at 67.287 kb on + strand, within HMPREF1181_RS15575 at 67.421 kb on - strand, within HMPREF1181_RS15575 at 67.493 kb on + strand, within HMPREF1181_RS15575 at 67.493 kb on + strand, within HMPREF1181_RS15575 at 67.493 kb on + strand, within HMPREF1181_RS15575 at 67.494 kb on - strand, within HMPREF1181_RS15575 at 67.494 kb on - strand, within HMPREF1181_RS15575 at 67.497 kb on + strand, within HMPREF1181_RS15575 at 67.684 kb on + strand, within HMPREF1181_RS15575 at 67.737 kb on + strand, within HMPREF1181_RS15575 at 67.759 kb on - strand, within HMPREF1181_RS15575 at 67.759 kb on - strand, within HMPREF1181_RS15575 at 67.841 kb on + strand, within HMPREF1181_RS15575 at 68.174 kb on + strand, within HMPREF1181_RS15575 at 68.174 kb on + strand, within HMPREF1181_RS15575 at 68.174 kb on + strand, within HMPREF1181_RS15575 at 68.178 kb on + strand, within HMPREF1181_RS15575 at 68.178 kb on + strand, within HMPREF1181_RS15575 at 68.237 kb on - strand at 68.276 kb on - strand at 68.282 kb on + strand at 68.282 kb on + strand at 68.316 kb on - strand at 68.356 kb on + strand at 68.356 kb on + strand at 68.357 kb on - strand at 68.363 kb on + strand at 68.366 kb on - strand at 68.366 kb on - strand at 68.392 kb on - strand at 68.392 kb on - strand at 68.565 kb on + strand, within HMPREF1181_RS15580 at 68.566 kb on - strand, within HMPREF1181_RS15580 at 68.634 kb on - strand, within HMPREF1181_RS15580 at 68.634 kb on - strand, within HMPREF1181_RS15580 at 68.922 kb on - strand, within HMPREF1181_RS15580 at 69.051 kb on - strand at 69.065 kb on - strand at 69.071 kb on + strand at 69.099 kb on + strand at 69.099 kb on + strand at 69.099 kb on + strand at 69.257 kb on + strand, within HMPREF1181_RS15585 at 69.257 kb on + strand, within HMPREF1181_RS15585 at 69.313 kb on + strand, within HMPREF1181_RS15585 at 69.314 kb on - strand, within HMPREF1181_RS15585 at 69.314 kb on - strand, within HMPREF1181_RS15585
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 66,186 + HMPREF1181_RS15570 0.32 -0.8 66,195 + HMPREF1181_RS15570 0.32 +1.1 66,241 - HMPREF1181_RS15570 0.36 -1.6 66,241 - HMPREF1181_RS15570 0.36 -1.8 66,267 + HMPREF1181_RS15570 0.38 -1.7 66,267 + HMPREF1181_RS15570 0.38 -0.8 66,268 - HMPREF1181_RS15570 0.38 -1.6 66,293 - HMPREF1181_RS15570 0.40 -0.8 66,547 - HMPREF1181_RS15570 0.60 +0.2 66,548 + HMPREF1181_RS15570 0.60 -0.5 66,581 + HMPREF1181_RS15570 0.63 -0.9 66,663 + HMPREF1181_RS15570 0.69 -1.5 66,664 - HMPREF1181_RS15570 0.69 -1.3 66,664 - HMPREF1181_RS15570 0.69 +0.7 66,682 + HMPREF1181_RS15570 0.70 -1.7 66,729 + HMPREF1181_RS15570 0.74 +1.8 66,888 - HMPREF1181_RS15570 0.87 -1.7 66,898 + HMPREF1181_RS15570 0.87 -1.4 66,898 + HMPREF1181_RS15570 0.87 -2.1 66,905 + HMPREF1181_RS15570 0.88 -0.1 66,920 + HMPREF1181_RS15570 0.89 -1.2 66,928 - HMPREF1181_RS15570 0.90 +1.5 67,033 - -1.1 67,046 - -1.8 67,046 - -1.6 67,049 - -1.1 67,102 + +0.5 67,287 + HMPREF1181_RS15575 0.17 +2.1 67,421 - HMPREF1181_RS15575 0.27 -1.4 67,493 + HMPREF1181_RS15575 0.33 -0.2 67,493 + HMPREF1181_RS15575 0.33 -1.3 67,493 + HMPREF1181_RS15575 0.33 +1.9 67,494 - HMPREF1181_RS15575 0.33 -0.6 67,494 - HMPREF1181_RS15575 0.33 -0.7 67,497 + HMPREF1181_RS15575 0.33 +0.1 67,684 + HMPREF1181_RS15575 0.48 +0.7 67,737 + HMPREF1181_RS15575 0.52 +3.6 67,759 - HMPREF1181_RS15575 0.54 +1.1 67,759 - HMPREF1181_RS15575 0.54 -1.0 67,841 + HMPREF1181_RS15575 0.60 -2.1 68,174 + HMPREF1181_RS15575 0.86 -0.4 68,174 + HMPREF1181_RS15575 0.86 -0.7 68,174 + HMPREF1181_RS15575 0.86 +0.2 68,178 + HMPREF1181_RS15575 0.87 -1.5 68,178 + HMPREF1181_RS15575 0.87 -0.5 68,237 - +0.2 68,276 - -1.3 68,282 + -1.7 68,282 + +0.9 68,316 - -2.3 68,356 + -1.4 68,356 + -1.2 68,357 - -1.8 68,363 + +1.0 68,366 - -2.1 68,366 - -1.0 68,392 - +0.5 68,392 - -1.9 68,565 + HMPREF1181_RS15580 0.27 +0.4 68,566 - HMPREF1181_RS15580 0.27 -1.1 68,634 - HMPREF1181_RS15580 0.37 -0.5 68,634 - HMPREF1181_RS15580 0.37 -0.2 68,922 - HMPREF1181_RS15580 0.81 -2.2 69,051 - -1.8 69,065 - -1.8 69,071 + -2.6 69,099 + +2.3 69,099 + +1.9 69,099 + -0.9 69,257 + HMPREF1181_RS15585 0.15 -1.5 69,257 + HMPREF1181_RS15585 0.15 -0.6 69,313 + HMPREF1181_RS15585 0.19 +1.3 69,314 - HMPREF1181_RS15585 0.20 -2.2 69,314 - HMPREF1181_RS15585 0.20 -1.8
Or see this region's nucleotide sequence