Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS14010 and HMPREF1181_RS14015 are separated by 321 nucleotides HMPREF1181_RS14015 and HMPREF1181_RS14020 are separated by 4 nucleotides
HMPREF1181_RS14010: HMPREF1181_RS14010 - 1-deoxy-D-xylulose-5-phosphate synthase, at 321,926 to 323,686
_RS14010
HMPREF1181_RS14015: HMPREF1181_RS14015 - electron transfer flavoprotein subunit beta/FixA family protein, at 324,008 to 324,901
_RS14015
HMPREF1181_RS14020: HMPREF1181_RS14020 - electron transfer flavoprotein subunit alpha/FixB family protein, at 324,906 to 325,925
_RS14020
Position (kb) 324
325 Strain fitness (log2 ratio) -2
-1
0
1
2 at 323.018 kb on + strand, within HMPREF1181_RS14010 at 323.018 kb on + strand, within HMPREF1181_RS14010 at 323.019 kb on - strand, within HMPREF1181_RS14010 at 323.019 kb on - strand, within HMPREF1181_RS14010 at 323.052 kb on + strand, within HMPREF1181_RS14010 at 323.058 kb on + strand, within HMPREF1181_RS14010 at 323.058 kb on + strand, within HMPREF1181_RS14010 at 323.345 kb on - strand, within HMPREF1181_RS14010 at 323.450 kb on + strand, within HMPREF1181_RS14010 at 323.517 kb on + strand at 323.518 kb on - strand at 323.518 kb on - strand at 323.678 kb on + strand at 323.679 kb on - strand at 323.680 kb on + strand at 323.682 kb on + strand at 323.683 kb on - strand at 323.683 kb on - strand at 323.683 kb on - strand at 323.687 kb on - strand at 323.687 kb on - strand at 323.687 kb on - strand at 323.692 kb on + strand at 323.693 kb on - strand at 323.696 kb on + strand at 323.696 kb on + strand at 323.712 kb on - strand at 323.825 kb on + strand at 323.826 kb on - strand at 323.871 kb on - strand at 323.920 kb on + strand at 323.920 kb on + strand at 323.988 kb on + strand at 323.997 kb on + strand at 324.004 kb on + strand at 324.879 kb on + strand at 324.880 kb on - strand at 324.905 kb on + strand at 324.922 kb on + strand at 324.925 kb on - strand at 324.935 kb on - strand at 325.063 kb on + strand, within HMPREF1181_RS14020 at 325.094 kb on - strand, within HMPREF1181_RS14020 at 325.229 kb on - strand, within HMPREF1181_RS14020 at 325.503 kb on + strand, within HMPREF1181_RS14020 at 325.507 kb on + strand, within HMPREF1181_RS14020 at 325.741 kb on - strand, within HMPREF1181_RS14020 at 325.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 323,018 + HMPREF1181_RS14010 0.62 +1.6 323,018 + HMPREF1181_RS14010 0.62 +0.2 323,019 - HMPREF1181_RS14010 0.62 -1.0 323,019 - HMPREF1181_RS14010 0.62 +1.8 323,052 + HMPREF1181_RS14010 0.64 -0.0 323,058 + HMPREF1181_RS14010 0.64 -1.4 323,058 + HMPREF1181_RS14010 0.64 -1.4 323,345 - HMPREF1181_RS14010 0.81 -0.8 323,450 + HMPREF1181_RS14010 0.87 +1.7 323,517 + -1.9 323,518 - -1.4 323,518 - +1.0 323,678 + -1.3 323,679 - +1.7 323,680 + +1.9 323,682 + +0.9 323,683 - -0.8 323,683 - -0.8 323,683 - +1.5 323,687 - +1.0 323,687 - -1.6 323,687 - -0.5 323,692 + +1.1 323,693 - -2.0 323,696 + -1.0 323,696 + +2.2 323,712 - +0.6 323,825 + +1.6 323,826 - -0.5 323,871 - -0.2 323,920 + +0.9 323,920 + -0.2 323,988 + +0.8 323,997 + -1.8 324,004 + -1.6 324,879 + +1.2 324,880 - +0.9 324,905 + +0.6 324,922 + -1.8 324,925 - -1.2 324,935 - -1.2 325,063 + HMPREF1181_RS14020 0.15 -1.2 325,094 - HMPREF1181_RS14020 0.18 -0.8 325,229 - HMPREF1181_RS14020 0.32 -0.2 325,503 + HMPREF1181_RS14020 0.59 -0.9 325,507 + HMPREF1181_RS14020 0.59 -0.9 325,741 - HMPREF1181_RS14020 0.82 +2.2 325,899 - -0.4
Or see this region's nucleotide sequence