Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS13110

Experiment: a-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS18135 and HMPREF1181_RS13105 are separated by 103 nucleotidesHMPREF1181_RS13105 and HMPREF1181_RS13110 are separated by 9 nucleotidesHMPREF1181_RS13110 and HMPREF1181_RS13115 are separated by 12 nucleotides HMPREF1181_RS18135: HMPREF1181_RS18135 - hypothetical protein, at 115,903 to 116,064 _RS18135 HMPREF1181_RS13105: HMPREF1181_RS13105 - Crp/Fnr family transcriptional regulator, at 116,168 to 116,770 _RS13105 HMPREF1181_RS13110: HMPREF1181_RS13110 - RagB/SusD family nutrient uptake outer membrane protein, at 116,780 to 118,396 _RS13110 HMPREF1181_RS13115: HMPREF1181_RS13115 - SusC/RagA family TonB-linked outer membrane protein, at 118,409 to 121,105 _RS13115 Position (kb) 116 117 118 119Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 115.782 kb on + strandat 115.783 kb on - strandat 115.791 kb on - strandat 115.791 kb on - strandat 115.831 kb on + strandat 115.832 kb on - strandat 115.832 kb on - strandat 115.902 kb on + strandat 115.909 kb on - strandat 115.954 kb on + strand, within HMPREF1181_RS18135at 115.955 kb on - strand, within HMPREF1181_RS18135at 115.990 kb on - strand, within HMPREF1181_RS18135at 115.990 kb on - strand, within HMPREF1181_RS18135at 116.014 kb on + strand, within HMPREF1181_RS18135at 116.014 kb on + strand, within HMPREF1181_RS18135at 116.062 kb on + strandat 116.118 kb on - strandat 116.146 kb on - strandat 116.155 kb on + strandat 116.185 kb on + strandat 116.186 kb on - strandat 116.186 kb on - strandat 116.186 kb on - strandat 116.201 kb on + strandat 116.211 kb on - strandat 116.235 kb on + strand, within HMPREF1181_RS13105at 116.271 kb on - strand, within HMPREF1181_RS13105at 116.291 kb on + strand, within HMPREF1181_RS13105at 116.296 kb on + strand, within HMPREF1181_RS13105at 116.296 kb on + strand, within HMPREF1181_RS13105at 116.301 kb on + strand, within HMPREF1181_RS13105at 116.302 kb on - strand, within HMPREF1181_RS13105at 116.385 kb on - strand, within HMPREF1181_RS13105at 116.429 kb on - strand, within HMPREF1181_RS13105at 116.462 kb on + strand, within HMPREF1181_RS13105at 116.477 kb on - strand, within HMPREF1181_RS13105at 116.477 kb on - strand, within HMPREF1181_RS13105at 116.502 kb on + strand, within HMPREF1181_RS13105at 116.502 kb on + strand, within HMPREF1181_RS13105at 116.503 kb on - strand, within HMPREF1181_RS13105at 116.549 kb on + strand, within HMPREF1181_RS13105at 116.549 kb on + strand, within HMPREF1181_RS13105at 116.575 kb on - strand, within HMPREF1181_RS13105at 116.588 kb on - strand, within HMPREF1181_RS13105at 116.605 kb on - strand, within HMPREF1181_RS13105at 116.618 kb on - strand, within HMPREF1181_RS13105at 116.618 kb on - strand, within HMPREF1181_RS13105at 116.618 kb on - strand, within HMPREF1181_RS13105at 116.618 kb on - strand, within HMPREF1181_RS13105at 116.637 kb on - strand, within HMPREF1181_RS13105at 116.642 kb on + strand, within HMPREF1181_RS13105at 116.675 kb on - strand, within HMPREF1181_RS13105at 116.695 kb on + strand, within HMPREF1181_RS13105at 116.736 kb on - strandat 116.737 kb on + strandat 116.764 kb on + strandat 116.781 kb on + strandat 116.785 kb on + strandat 116.785 kb on + strandat 116.786 kb on - strandat 116.854 kb on + strandat 116.854 kb on + strandat 116.855 kb on - strandat 116.925 kb on + strandat 116.926 kb on + strandat 116.927 kb on - strandat 116.927 kb on - strandat 116.954 kb on + strand, within HMPREF1181_RS13110at 116.954 kb on + strand, within HMPREF1181_RS13110at 116.955 kb on - strand, within HMPREF1181_RS13110at 117.065 kb on + strand, within HMPREF1181_RS13110at 117.065 kb on + strand, within HMPREF1181_RS13110at 117.066 kb on - strand, within HMPREF1181_RS13110at 117.169 kb on - strand, within HMPREF1181_RS13110at 117.202 kb on - strand, within HMPREF1181_RS13110at 117.228 kb on - strand, within HMPREF1181_RS13110at 117.273 kb on - strand, within HMPREF1181_RS13110at 117.332 kb on + strand, within HMPREF1181_RS13110at 117.360 kb on - strand, within HMPREF1181_RS13110at 117.373 kb on + strand, within HMPREF1181_RS13110at 117.386 kb on - strand, within HMPREF1181_RS13110at 117.426 kb on + strand, within HMPREF1181_RS13110at 117.465 kb on + strand, within HMPREF1181_RS13110at 117.465 kb on + strand, within HMPREF1181_RS13110at 117.466 kb on - strand, within HMPREF1181_RS13110at 117.494 kb on + strand, within HMPREF1181_RS13110at 117.532 kb on + strand, within HMPREF1181_RS13110at 117.532 kb on + strand, within HMPREF1181_RS13110at 117.533 kb on - strand, within HMPREF1181_RS13110at 117.535 kb on - strand, within HMPREF1181_RS13110at 117.538 kb on + strand, within HMPREF1181_RS13110at 117.538 kb on + strand, within HMPREF1181_RS13110at 117.538 kb on + strand, within HMPREF1181_RS13110at 117.539 kb on - strand, within HMPREF1181_RS13110at 117.540 kb on + strand, within HMPREF1181_RS13110at 117.563 kb on + strand, within HMPREF1181_RS13110at 117.564 kb on - strand, within HMPREF1181_RS13110at 117.585 kb on + strand, within HMPREF1181_RS13110at 117.676 kb on + strand, within HMPREF1181_RS13110at 117.688 kb on - strand, within HMPREF1181_RS13110at 117.690 kb on - strand, within HMPREF1181_RS13110at 117.701 kb on - strand, within HMPREF1181_RS13110at 117.743 kb on + strand, within HMPREF1181_RS13110at 117.743 kb on + strand, within HMPREF1181_RS13110at 117.744 kb on - strand, within HMPREF1181_RS13110at 117.753 kb on + strand, within HMPREF1181_RS13110at 117.753 kb on + strand, within HMPREF1181_RS13110at 117.757 kb on - strand, within HMPREF1181_RS13110at 117.757 kb on - strand, within HMPREF1181_RS13110at 117.776 kb on - strand, within HMPREF1181_RS13110at 117.880 kb on - strand, within HMPREF1181_RS13110at 117.906 kb on + strand, within HMPREF1181_RS13110at 117.910 kb on + strand, within HMPREF1181_RS13110at 117.921 kb on + strand, within HMPREF1181_RS13110at 117.921 kb on + strand, within HMPREF1181_RS13110at 117.921 kb on + strand, within HMPREF1181_RS13110at 117.922 kb on - strand, within HMPREF1181_RS13110at 117.927 kb on + strand, within HMPREF1181_RS13110at 117.986 kb on + strand, within HMPREF1181_RS13110at 117.991 kb on + strand, within HMPREF1181_RS13110at 118.000 kb on - strand, within HMPREF1181_RS13110at 118.000 kb on - strand, within HMPREF1181_RS13110at 118.013 kb on - strand, within HMPREF1181_RS13110at 118.048 kb on - strand, within HMPREF1181_RS13110at 118.068 kb on + strand, within HMPREF1181_RS13110at 118.105 kb on - strand, within HMPREF1181_RS13110at 118.109 kb on - strand, within HMPREF1181_RS13110at 118.150 kb on + strand, within HMPREF1181_RS13110at 118.151 kb on - strand, within HMPREF1181_RS13110at 118.151 kb on - strand, within HMPREF1181_RS13110at 118.154 kb on + strand, within HMPREF1181_RS13110at 118.174 kb on + strand, within HMPREF1181_RS13110at 118.175 kb on - strand, within HMPREF1181_RS13110at 118.175 kb on - strand, within HMPREF1181_RS13110at 118.246 kb on - strandat 118.246 kb on - strandat 118.271 kb on - strandat 118.273 kb on + strandat 118.275 kb on + strandat 118.275 kb on + strandat 118.275 kb on + strandat 118.275 kb on + strandat 118.276 kb on - strandat 118.276 kb on - strandat 118.311 kb on + strandat 118.325 kb on - strandat 118.382 kb on + strandat 118.383 kb on - strandat 118.383 kb on - strandat 118.385 kb on - strandat 118.423 kb on + strandat 118.424 kb on - strandat 118.431 kb on - strandat 118.438 kb on - strandat 118.447 kb on - strandat 118.493 kb on + strandat 118.505 kb on + strandat 118.517 kb on - strandat 118.517 kb on - strandat 118.618 kb on + strandat 118.621 kb on + strandat 118.622 kb on - strandat 118.634 kb on + strandat 118.660 kb on - strandat 118.729 kb on + strand, within HMPREF1181_RS13115at 118.735 kb on + strand, within HMPREF1181_RS13115at 118.735 kb on + strand, within HMPREF1181_RS13115at 118.736 kb on - strand, within HMPREF1181_RS13115at 118.736 kb on - strand, within HMPREF1181_RS13115at 118.736 kb on - strand, within HMPREF1181_RS13115at 118.736 kb on - strand, within HMPREF1181_RS13115at 118.736 kb on - strand, within HMPREF1181_RS13115at 118.767 kb on - strand, within HMPREF1181_RS13115at 118.767 kb on - strand, within HMPREF1181_RS13115at 118.771 kb on + strand, within HMPREF1181_RS13115at 118.772 kb on - strand, within HMPREF1181_RS13115at 118.790 kb on + strand, within HMPREF1181_RS13115at 118.847 kb on + strand, within HMPREF1181_RS13115at 118.848 kb on - strand, within HMPREF1181_RS13115at 118.871 kb on + strand, within HMPREF1181_RS13115at 118.873 kb on + strand, within HMPREF1181_RS13115at 118.875 kb on + strand, within HMPREF1181_RS13115at 118.875 kb on + strand, within HMPREF1181_RS13115at 118.875 kb on + strand, within HMPREF1181_RS13115at 118.875 kb on + strand, within HMPREF1181_RS13115at 118.875 kb on + strand, within HMPREF1181_RS13115at 118.876 kb on - strand, within HMPREF1181_RS13115at 118.876 kb on - strand, within HMPREF1181_RS13115at 118.876 kb on - strand, within HMPREF1181_RS13115at 118.941 kb on + strand, within HMPREF1181_RS13115at 118.983 kb on - strand, within HMPREF1181_RS13115at 119.019 kb on + strand, within HMPREF1181_RS13115at 119.025 kb on - strand, within HMPREF1181_RS13115at 119.025 kb on - strand, within HMPREF1181_RS13115at 119.025 kb on - strand, within HMPREF1181_RS13115at 119.096 kb on - strand, within HMPREF1181_RS13115at 119.107 kb on + strand, within HMPREF1181_RS13115at 119.107 kb on + strand, within HMPREF1181_RS13115at 119.134 kb on + strand, within HMPREF1181_RS13115at 119.145 kb on + strand, within HMPREF1181_RS13115at 119.152 kb on + strand, within HMPREF1181_RS13115at 119.153 kb on - strand, within HMPREF1181_RS13115at 119.164 kb on + strand, within HMPREF1181_RS13115at 119.165 kb on - strand, within HMPREF1181_RS13115at 119.289 kb on + strand, within HMPREF1181_RS13115at 119.295 kb on + strand, within HMPREF1181_RS13115at 119.336 kb on - strand, within HMPREF1181_RS13115at 119.357 kb on + strand, within HMPREF1181_RS13115at 119.357 kb on + strand, within HMPREF1181_RS13115at 119.358 kb on - strand, within HMPREF1181_RS13115at 119.359 kb on + strand, within HMPREF1181_RS13115at 119.359 kb on + strand, within HMPREF1181_RS13115at 119.363 kb on + strand, within HMPREF1181_RS13115at 119.380 kb on + strand, within HMPREF1181_RS13115at 119.380 kb on + strand, within HMPREF1181_RS13115

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C)
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115,782 + +0.9
115,783 - +0.8
115,791 - +1.2
115,791 - -0.6
115,831 + +0.8
115,832 - -1.6
115,832 - -3.5
115,902 + -1.4
115,909 - +1.0
115,954 + HMPREF1181_RS18135 0.31 +1.9
115,955 - HMPREF1181_RS18135 0.32 +0.8
115,990 - HMPREF1181_RS18135 0.54 -0.5
115,990 - HMPREF1181_RS18135 0.54 -1.4
116,014 + HMPREF1181_RS18135 0.69 +3.9
116,014 + HMPREF1181_RS18135 0.69 +2.1
116,062 + -2.2
116,118 - +1.3
116,146 - +0.8
116,155 + +0.7
116,185 + +0.1
116,186 - +0.1
116,186 - -0.7
116,186 - +0.4
116,201 + +0.2
116,211 - +0.3
116,235 + HMPREF1181_RS13105 0.11 +2.9
116,271 - HMPREF1181_RS13105 0.17 +0.5
116,291 + HMPREF1181_RS13105 0.20 -0.9
116,296 + HMPREF1181_RS13105 0.21 +1.0
116,296 + HMPREF1181_RS13105 0.21 -0.8
116,301 + HMPREF1181_RS13105 0.22 -1.8
116,302 - HMPREF1181_RS13105 0.22 +0.1
116,385 - HMPREF1181_RS13105 0.36 -1.0
116,429 - HMPREF1181_RS13105 0.43 -0.5
116,462 + HMPREF1181_RS13105 0.49 -0.2
116,477 - HMPREF1181_RS13105 0.51 +1.8
116,477 - HMPREF1181_RS13105 0.51 -1.6
116,502 + HMPREF1181_RS13105 0.55 +1.5
116,502 + HMPREF1181_RS13105 0.55 -1.0
116,503 - HMPREF1181_RS13105 0.56 +3.1
116,549 + HMPREF1181_RS13105 0.63 -1.1
116,549 + HMPREF1181_RS13105 0.63 -1.9
116,575 - HMPREF1181_RS13105 0.67 +2.1
116,588 - HMPREF1181_RS13105 0.70 -0.4
116,605 - HMPREF1181_RS13105 0.72 +2.3
116,618 - HMPREF1181_RS13105 0.75 +0.5
116,618 - HMPREF1181_RS13105 0.75 +0.7
116,618 - HMPREF1181_RS13105 0.75 -0.5
116,618 - HMPREF1181_RS13105 0.75 -1.0
116,637 - HMPREF1181_RS13105 0.78 -0.1
116,642 + HMPREF1181_RS13105 0.79 +0.7
116,675 - HMPREF1181_RS13105 0.84 -0.7
116,695 + HMPREF1181_RS13105 0.87 +1.1
116,736 - +0.3
116,737 + -1.6
116,764 + -0.7
116,781 + +0.8
116,785 + -0.6
116,785 + -0.0
116,786 - +1.6
116,854 + -1.9
116,854 + -0.7
116,855 - -1.3
116,925 + +1.5
116,926 + +0.6
116,927 - +0.1
116,927 - +0.9
116,954 + HMPREF1181_RS13110 0.11 -1.8
116,954 + HMPREF1181_RS13110 0.11 +0.8
116,955 - HMPREF1181_RS13110 0.11 +2.0
117,065 + HMPREF1181_RS13110 0.18 -0.7
117,065 + HMPREF1181_RS13110 0.18 -1.6
117,066 - HMPREF1181_RS13110 0.18 +0.8
117,169 - HMPREF1181_RS13110 0.24 +2.4
117,202 - HMPREF1181_RS13110 0.26 +1.5
117,228 - HMPREF1181_RS13110 0.28 -1.3
117,273 - HMPREF1181_RS13110 0.30 +0.6
117,332 + HMPREF1181_RS13110 0.34 -1.1
117,360 - HMPREF1181_RS13110 0.36 +0.6
117,373 + HMPREF1181_RS13110 0.37 -0.4
117,386 - HMPREF1181_RS13110 0.37 +2.1
117,426 + HMPREF1181_RS13110 0.40 -1.2
117,465 + HMPREF1181_RS13110 0.42 -2.3
117,465 + HMPREF1181_RS13110 0.42 -0.9
117,466 - HMPREF1181_RS13110 0.42 +0.1
117,494 + HMPREF1181_RS13110 0.44 -1.4
117,532 + HMPREF1181_RS13110 0.47 +0.9
117,532 + HMPREF1181_RS13110 0.47 -1.4
117,533 - HMPREF1181_RS13110 0.47 +0.9
117,535 - HMPREF1181_RS13110 0.47 -0.8
117,538 + HMPREF1181_RS13110 0.47 +0.9
117,538 + HMPREF1181_RS13110 0.47 -2.4
117,538 + HMPREF1181_RS13110 0.47 +0.7
117,539 - HMPREF1181_RS13110 0.47 +1.9
117,540 + HMPREF1181_RS13110 0.47 -0.1
117,563 + HMPREF1181_RS13110 0.48 +0.2
117,564 - HMPREF1181_RS13110 0.48 +1.3
117,585 + HMPREF1181_RS13110 0.50 -0.3
117,676 + HMPREF1181_RS13110 0.55 +0.2
117,688 - HMPREF1181_RS13110 0.56 +1.1
117,690 - HMPREF1181_RS13110 0.56 +0.1
117,701 - HMPREF1181_RS13110 0.57 +0.5
117,743 + HMPREF1181_RS13110 0.60 +1.8
117,743 + HMPREF1181_RS13110 0.60 -0.1
117,744 - HMPREF1181_RS13110 0.60 -0.1
117,753 + HMPREF1181_RS13110 0.60 -2.3
117,753 + HMPREF1181_RS13110 0.60 +0.2
117,757 - HMPREF1181_RS13110 0.60 -1.7
117,757 - HMPREF1181_RS13110 0.60 +1.1
117,776 - HMPREF1181_RS13110 0.62 +2.1
117,880 - HMPREF1181_RS13110 0.68 -1.0
117,906 + HMPREF1181_RS13110 0.70 +0.9
117,910 + HMPREF1181_RS13110 0.70 +0.8
117,921 + HMPREF1181_RS13110 0.71 +0.9
117,921 + HMPREF1181_RS13110 0.71 -1.5
117,921 + HMPREF1181_RS13110 0.71 +1.9
117,922 - HMPREF1181_RS13110 0.71 +0.8
117,927 + HMPREF1181_RS13110 0.71 -0.4
117,986 + HMPREF1181_RS13110 0.75 -0.2
117,991 + HMPREF1181_RS13110 0.75 -0.2
118,000 - HMPREF1181_RS13110 0.75 +1.2
118,000 - HMPREF1181_RS13110 0.75 -1.6
118,013 - HMPREF1181_RS13110 0.76 -0.9
118,048 - HMPREF1181_RS13110 0.78 +0.1
118,068 + HMPREF1181_RS13110 0.80 -0.0
118,105 - HMPREF1181_RS13110 0.82 +0.0
118,109 - HMPREF1181_RS13110 0.82 +1.2
118,150 + HMPREF1181_RS13110 0.85 +1.9
118,151 - HMPREF1181_RS13110 0.85 +1.0
118,151 - HMPREF1181_RS13110 0.85 -1.0
118,154 + HMPREF1181_RS13110 0.85 +0.1
118,174 + HMPREF1181_RS13110 0.86 +0.3
118,175 - HMPREF1181_RS13110 0.86 -1.0
118,175 - HMPREF1181_RS13110 0.86 +0.9
118,246 - +1.4
118,246 - +0.9
118,271 - +0.4
118,273 + -0.9
118,275 + -0.3
118,275 + +0.5
118,275 + -1.8
118,275 + +0.9
118,276 - +1.2
118,276 - +2.3
118,311 + -0.3
118,325 - -1.1
118,382 + +1.7
118,383 - +1.7
118,383 - -1.6
118,385 - -2.3
118,423 + -1.8
118,424 - -1.6
118,431 - -4.1
118,438 - -0.4
118,447 - +2.1
118,493 + -2.4
118,505 + +1.9
118,517 - -0.8
118,517 - +2.1
118,618 + +0.6
118,621 + +1.3
118,622 - -0.6
118,634 + -0.2
118,660 - -0.3
118,729 + HMPREF1181_RS13115 0.12 -0.3
118,735 + HMPREF1181_RS13115 0.12 +0.8
118,735 + HMPREF1181_RS13115 0.12 -1.2
118,736 - HMPREF1181_RS13115 0.12 +0.3
118,736 - HMPREF1181_RS13115 0.12 +0.1
118,736 - HMPREF1181_RS13115 0.12 +1.1
118,736 - HMPREF1181_RS13115 0.12 +0.8
118,736 - HMPREF1181_RS13115 0.12 +1.4
118,767 - HMPREF1181_RS13115 0.13 -2.0
118,767 - HMPREF1181_RS13115 0.13 -1.6
118,771 + HMPREF1181_RS13115 0.13 +0.9
118,772 - HMPREF1181_RS13115 0.13 -1.3
118,790 + HMPREF1181_RS13115 0.14 +1.3
118,847 + HMPREF1181_RS13115 0.16 +0.7
118,848 - HMPREF1181_RS13115 0.16 -0.7
118,871 + HMPREF1181_RS13115 0.17 -1.5
118,873 + HMPREF1181_RS13115 0.17 +1.6
118,875 + HMPREF1181_RS13115 0.17 +0.5
118,875 + HMPREF1181_RS13115 0.17 -2.0
118,875 + HMPREF1181_RS13115 0.17 +0.9
118,875 + HMPREF1181_RS13115 0.17 -1.4
118,875 + HMPREF1181_RS13115 0.17 +1.1
118,876 - HMPREF1181_RS13115 0.17 -0.8
118,876 - HMPREF1181_RS13115 0.17 -1.2
118,876 - HMPREF1181_RS13115 0.17 +0.7
118,941 + HMPREF1181_RS13115 0.20 +0.1
118,983 - HMPREF1181_RS13115 0.21 +0.1
119,019 + HMPREF1181_RS13115 0.23 +0.5
119,025 - HMPREF1181_RS13115 0.23 -2.1
119,025 - HMPREF1181_RS13115 0.23 +0.9
119,025 - HMPREF1181_RS13115 0.23 -0.0
119,096 - HMPREF1181_RS13115 0.25 +1.4
119,107 + HMPREF1181_RS13115 0.26 +0.0
119,107 + HMPREF1181_RS13115 0.26 -0.1
119,134 + HMPREF1181_RS13115 0.27 -1.8
119,145 + HMPREF1181_RS13115 0.27 -2.5
119,152 + HMPREF1181_RS13115 0.28 +0.0
119,153 - HMPREF1181_RS13115 0.28 -0.7
119,164 + HMPREF1181_RS13115 0.28 -1.9
119,165 - HMPREF1181_RS13115 0.28 +1.5
119,289 + HMPREF1181_RS13115 0.33 -1.0
119,295 + HMPREF1181_RS13115 0.33 -1.1
119,336 - HMPREF1181_RS13115 0.34 -1.2
119,357 + HMPREF1181_RS13115 0.35 +1.0
119,357 + HMPREF1181_RS13115 0.35 +0.6
119,358 - HMPREF1181_RS13115 0.35 +2.3
119,359 + HMPREF1181_RS13115 0.35 +0.7
119,359 + HMPREF1181_RS13115 0.35 +1.2
119,363 + HMPREF1181_RS13115 0.35 -3.0
119,380 + HMPREF1181_RS13115 0.36 +1.7
119,380 + HMPREF1181_RS13115 0.36 +0.3

Or see this region's nucleotide sequence