Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS12485 and HMPREF1181_RS12490 are separated by 39 nucleotides HMPREF1181_RS12490 and HMPREF1181_RS12495 are separated by 4 nucleotides
HMPREF1181_RS12485: HMPREF1181_RS12485 - ABC transporter permease, at 498,649 to 499,869
_RS12485
HMPREF1181_RS12490: HMPREF1181_RS12490 - histidine kinase, at 499,909 to 500,973
_RS12490
HMPREF1181_RS12495: HMPREF1181_RS12495 - response regulator transcription factor, at 500,978 to 501,679
_RS12495
Position (kb) 499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 499.053 kb on + strand, within HMPREF1181_RS12485 at 499.092 kb on - strand, within HMPREF1181_RS12485 at 499.109 kb on + strand, within HMPREF1181_RS12485 at 499.109 kb on + strand, within HMPREF1181_RS12485 at 499.110 kb on - strand, within HMPREF1181_RS12485 at 499.130 kb on + strand, within HMPREF1181_RS12485 at 499.231 kb on + strand, within HMPREF1181_RS12485 at 499.231 kb on + strand, within HMPREF1181_RS12485 at 499.232 kb on - strand, within HMPREF1181_RS12485 at 499.265 kb on + strand, within HMPREF1181_RS12485 at 499.266 kb on - strand, within HMPREF1181_RS12485 at 499.323 kb on + strand, within HMPREF1181_RS12485 at 499.436 kb on + strand, within HMPREF1181_RS12485 at 499.491 kb on + strand, within HMPREF1181_RS12485 at 499.558 kb on + strand, within HMPREF1181_RS12485 at 499.558 kb on + strand, within HMPREF1181_RS12485 at 499.562 kb on + strand, within HMPREF1181_RS12485 at 499.744 kb on + strand, within HMPREF1181_RS12485 at 499.744 kb on + strand, within HMPREF1181_RS12485 at 499.744 kb on + strand, within HMPREF1181_RS12485 at 499.745 kb on - strand, within HMPREF1181_RS12485 at 499.746 kb on + strand, within HMPREF1181_RS12485 at 499.749 kb on - strand at 499.785 kb on + strand at 499.857 kb on - strand at 499.959 kb on + strand at 499.959 kb on + strand at 499.979 kb on + strand at 500.038 kb on + strand, within HMPREF1181_RS12490 at 500.082 kb on - strand, within HMPREF1181_RS12490 at 500.095 kb on + strand, within HMPREF1181_RS12490 at 500.096 kb on - strand, within HMPREF1181_RS12490 at 500.307 kb on + strand, within HMPREF1181_RS12490 at 500.308 kb on - strand, within HMPREF1181_RS12490 at 500.465 kb on - strand, within HMPREF1181_RS12490 at 500.507 kb on + strand, within HMPREF1181_RS12490 at 500.571 kb on - strand, within HMPREF1181_RS12490 at 500.599 kb on + strand, within HMPREF1181_RS12490 at 500.600 kb on - strand, within HMPREF1181_RS12490 at 500.766 kb on - strand, within HMPREF1181_RS12490 at 500.768 kb on - strand, within HMPREF1181_RS12490 at 500.768 kb on - strand, within HMPREF1181_RS12490 at 500.793 kb on - strand, within HMPREF1181_RS12490 at 500.871 kb on - strand at 500.871 kb on - strand at 500.893 kb on + strand at 500.924 kb on + strand at 500.924 kb on + strand at 500.925 kb on - strand at 500.925 kb on - strand at 500.925 kb on - strand at 500.946 kb on + strand at 500.947 kb on - strand at 501.001 kb on - strand at 501.039 kb on - strand at 501.039 kb on - strand at 501.190 kb on + strand, within HMPREF1181_RS12495 at 501.237 kb on + strand, within HMPREF1181_RS12495 at 501.248 kb on - strand, within HMPREF1181_RS12495 at 501.248 kb on - strand, within HMPREF1181_RS12495 at 501.266 kb on + strand, within HMPREF1181_RS12495 at 501.267 kb on - strand, within HMPREF1181_RS12495 at 501.287 kb on + strand, within HMPREF1181_RS12495 at 501.445 kb on + strand, within HMPREF1181_RS12495 at 501.507 kb on + strand, within HMPREF1181_RS12495 at 501.537 kb on + strand, within HMPREF1181_RS12495 at 501.555 kb on - strand, within HMPREF1181_RS12495 at 501.555 kb on - strand, within HMPREF1181_RS12495 at 501.555 kb on - strand, within HMPREF1181_RS12495 at 501.556 kb on + strand, within HMPREF1181_RS12495 at 501.581 kb on - strand, within HMPREF1181_RS12495 at 501.618 kb on - strand at 501.640 kb on + strand at 501.699 kb on + strand at 501.728 kb on - strand at 501.803 kb on - strand at 501.817 kb on - strand at 501.839 kb on - strand at 501.877 kb on + strand at 501.878 kb on - strand at 501.888 kb on + strand at 501.888 kb on + strand at 501.889 kb on - strand at 501.891 kb on + strand at 501.891 kb on + strand at 501.891 kb on + strand at 501.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 499,053 + HMPREF1181_RS12485 0.33 -0.4 499,092 - HMPREF1181_RS12485 0.36 -1.0 499,109 + HMPREF1181_RS12485 0.38 -0.2 499,109 + HMPREF1181_RS12485 0.38 +1.4 499,110 - HMPREF1181_RS12485 0.38 +1.1 499,130 + HMPREF1181_RS12485 0.39 +1.4 499,231 + HMPREF1181_RS12485 0.48 +3.4 499,231 + HMPREF1181_RS12485 0.48 -0.9 499,232 - HMPREF1181_RS12485 0.48 +0.5 499,265 + HMPREF1181_RS12485 0.50 -0.0 499,266 - HMPREF1181_RS12485 0.51 -1.6 499,323 + HMPREF1181_RS12485 0.55 -1.5 499,436 + HMPREF1181_RS12485 0.64 +2.9 499,491 + HMPREF1181_RS12485 0.69 -1.1 499,558 + HMPREF1181_RS12485 0.74 -2.0 499,558 + HMPREF1181_RS12485 0.74 +0.2 499,562 + HMPREF1181_RS12485 0.75 +2.1 499,744 + HMPREF1181_RS12485 0.90 -2.2 499,744 + HMPREF1181_RS12485 0.90 -1.3 499,744 + HMPREF1181_RS12485 0.90 +1.1 499,745 - HMPREF1181_RS12485 0.90 -1.8 499,746 + HMPREF1181_RS12485 0.90 -0.3 499,749 - -1.9 499,785 + -3.2 499,857 - +2.3 499,959 + +1.3 499,959 + -1.2 499,979 + -0.4 500,038 + HMPREF1181_RS12490 0.12 +0.9 500,082 - HMPREF1181_RS12490 0.16 +0.4 500,095 + HMPREF1181_RS12490 0.17 -0.9 500,096 - HMPREF1181_RS12490 0.18 -0.0 500,307 + HMPREF1181_RS12490 0.37 -1.3 500,308 - HMPREF1181_RS12490 0.37 -0.1 500,465 - HMPREF1181_RS12490 0.52 +0.4 500,507 + HMPREF1181_RS12490 0.56 +2.3 500,571 - HMPREF1181_RS12490 0.62 -1.7 500,599 + HMPREF1181_RS12490 0.65 -1.8 500,600 - HMPREF1181_RS12490 0.65 +0.7 500,766 - HMPREF1181_RS12490 0.80 -2.1 500,768 - HMPREF1181_RS12490 0.81 +1.1 500,768 - HMPREF1181_RS12490 0.81 -0.7 500,793 - HMPREF1181_RS12490 0.83 +1.7 500,871 - -1.1 500,871 - -0.6 500,893 + +0.4 500,924 + -1.6 500,924 + -1.7 500,925 - -0.4 500,925 - +0.7 500,925 - -1.5 500,946 + -2.8 500,947 - +0.3 501,001 - +2.4 501,039 - -0.8 501,039 - +1.4 501,190 + HMPREF1181_RS12495 0.30 +1.1 501,237 + HMPREF1181_RS12495 0.37 +1.0 501,248 - HMPREF1181_RS12495 0.38 -1.3 501,248 - HMPREF1181_RS12495 0.38 +1.4 501,266 + HMPREF1181_RS12495 0.41 +0.3 501,267 - HMPREF1181_RS12495 0.41 +2.6 501,287 + HMPREF1181_RS12495 0.44 +0.1 501,445 + HMPREF1181_RS12495 0.67 +1.5 501,507 + HMPREF1181_RS12495 0.75 -2.0 501,537 + HMPREF1181_RS12495 0.80 +0.9 501,555 - HMPREF1181_RS12495 0.82 +2.4 501,555 - HMPREF1181_RS12495 0.82 -0.6 501,555 - HMPREF1181_RS12495 0.82 +1.2 501,556 + HMPREF1181_RS12495 0.82 -1.8 501,581 - HMPREF1181_RS12495 0.86 +1.3 501,618 - -0.7 501,640 + +0.6 501,699 + +0.8 501,728 - +1.2 501,803 - +0.9 501,817 - +0.5 501,839 - +1.2 501,877 + +0.1 501,878 - -1.4 501,888 + +1.0 501,888 + +1.5 501,889 - +1.6 501,891 + -1.1 501,891 + +1.2 501,891 + +0.6 501,905 - +2.8
Or see this region's nucleotide sequence