Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS07825 and HMPREF1181_RS07830 are separated by 174 nucleotides HMPREF1181_RS07830 and HMPREF1181_RS17825 overlap by 4 nucleotides HMPREF1181_RS17825 and HMPREF1181_RS07835 are separated by 186 nucleotides
HMPREF1181_RS07825: HMPREF1181_RS07825 - carbohydate-binding domain-containing protein, at 59,432 to 61,933
_RS07825
HMPREF1181_RS07830: HMPREF1181_RS07830 - NADP-dependent malic enzyme, at 62,108 to 64,396
_RS07830
HMPREF1181_RS17825: HMPREF1181_RS17825 - hypothetical protein, at 64,393 to 64,566
_RS17825
HMPREF1181_RS07835: HMPREF1181_RS07835 - NADP-specific glutamate dehydrogenase, at 64,753 to 66,090
_RS07835
Position (kb) 62
63
64
65 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 61.155 kb on + strand, within HMPREF1181_RS07825 at 61.158 kb on + strand, within HMPREF1181_RS07825 at 61.159 kb on - strand, within HMPREF1181_RS07825 at 61.242 kb on + strand, within HMPREF1181_RS07825 at 61.370 kb on + strand, within HMPREF1181_RS07825 at 61.370 kb on + strand, within HMPREF1181_RS07825 at 61.371 kb on - strand, within HMPREF1181_RS07825 at 61.373 kb on - strand, within HMPREF1181_RS07825 at 61.373 kb on - strand, within HMPREF1181_RS07825 at 61.373 kb on - strand, within HMPREF1181_RS07825 at 61.649 kb on - strand, within HMPREF1181_RS07825 at 61.728 kb on + strand at 61.729 kb on - strand at 61.791 kb on + strand at 61.811 kb on - strand at 61.811 kb on - strand at 62.015 kb on + strand at 62.104 kb on + strand at 62.197 kb on + strand at 62.279 kb on + strand at 62.281 kb on + strand at 62.307 kb on + strand at 62.353 kb on - strand, within HMPREF1181_RS07830 at 62.409 kb on - strand, within HMPREF1181_RS07830 at 62.424 kb on + strand, within HMPREF1181_RS07830 at 62.425 kb on - strand, within HMPREF1181_RS07830 at 62.573 kb on - strand, within HMPREF1181_RS07830 at 62.647 kb on - strand, within HMPREF1181_RS07830 at 62.723 kb on + strand, within HMPREF1181_RS07830 at 62.926 kb on - strand, within HMPREF1181_RS07830 at 62.971 kb on + strand, within HMPREF1181_RS07830 at 62.982 kb on + strand, within HMPREF1181_RS07830 at 62.983 kb on - strand, within HMPREF1181_RS07830 at 62.987 kb on + strand, within HMPREF1181_RS07830 at 62.987 kb on + strand, within HMPREF1181_RS07830 at 63.018 kb on + strand, within HMPREF1181_RS07830 at 63.018 kb on + strand, within HMPREF1181_RS07830 at 63.019 kb on - strand, within HMPREF1181_RS07830 at 63.029 kb on - strand, within HMPREF1181_RS07830 at 63.083 kb on - strand, within HMPREF1181_RS07830 at 63.083 kb on - strand, within HMPREF1181_RS07830 at 63.203 kb on + strand, within HMPREF1181_RS07830 at 63.203 kb on + strand, within HMPREF1181_RS07830 at 63.204 kb on - strand, within HMPREF1181_RS07830 at 63.236 kb on + strand, within HMPREF1181_RS07830 at 63.466 kb on + strand, within HMPREF1181_RS07830 at 63.503 kb on - strand, within HMPREF1181_RS07830 at 63.678 kb on - strand, within HMPREF1181_RS07830 at 63.780 kb on - strand, within HMPREF1181_RS07830 at 63.810 kb on + strand, within HMPREF1181_RS07830 at 64.001 kb on + strand, within HMPREF1181_RS07830 at 64.061 kb on + strand, within HMPREF1181_RS07830 at 64.061 kb on + strand, within HMPREF1181_RS07830 at 64.077 kb on - strand, within HMPREF1181_RS07830 at 64.189 kb on + strand at 64.224 kb on - strand at 64.330 kb on + strand at 64.336 kb on - strand at 64.350 kb on + strand at 64.456 kb on + strand, within HMPREF1181_RS17825 at 64.461 kb on - strand, within HMPREF1181_RS17825 at 64.461 kb on - strand, within HMPREF1181_RS17825 at 64.463 kb on + strand, within HMPREF1181_RS17825 at 64.542 kb on - strand, within HMPREF1181_RS17825 at 64.660 kb on + strand at 64.719 kb on + strand at 64.738 kb on + strand at 64.738 kb on + strand at 64.752 kb on + strand at 64.770 kb on - strand at 64.773 kb on - strand at 64.773 kb on - strand at 64.773 kb on - strand at 64.824 kb on - strand at 64.855 kb on + strand at 64.856 kb on - strand at 64.961 kb on + strand, within HMPREF1181_RS07835 at 64.962 kb on - strand, within HMPREF1181_RS07835 at 65.101 kb on - strand, within HMPREF1181_RS07835 at 65.288 kb on - strand, within HMPREF1181_RS07835 at 65.390 kb on - strand, within HMPREF1181_RS07835
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 61,155 + HMPREF1181_RS07825 0.69 -1.4 61,158 + HMPREF1181_RS07825 0.69 -1.3 61,159 - HMPREF1181_RS07825 0.69 -1.1 61,242 + HMPREF1181_RS07825 0.72 +1.4 61,370 + HMPREF1181_RS07825 0.77 +1.2 61,370 + HMPREF1181_RS07825 0.77 -1.4 61,371 - HMPREF1181_RS07825 0.77 +0.1 61,373 - HMPREF1181_RS07825 0.78 -1.1 61,373 - HMPREF1181_RS07825 0.78 +2.5 61,373 - HMPREF1181_RS07825 0.78 -0.5 61,649 - HMPREF1181_RS07825 0.89 -0.7 61,728 + +1.5 61,729 - -1.3 61,791 + +1.2 61,811 - +1.4 61,811 - -1.5 62,015 + -0.9 62,104 + -2.5 62,197 + -2.1 62,279 + -3.0 62,281 + -1.2 62,307 + +0.9 62,353 - HMPREF1181_RS07830 0.11 -3.2 62,409 - HMPREF1181_RS07830 0.13 -0.9 62,424 + HMPREF1181_RS07830 0.14 -2.1 62,425 - HMPREF1181_RS07830 0.14 -2.2 62,573 - HMPREF1181_RS07830 0.20 -2.0 62,647 - HMPREF1181_RS07830 0.24 -1.3 62,723 + HMPREF1181_RS07830 0.27 -1.8 62,926 - HMPREF1181_RS07830 0.36 -1.9 62,971 + HMPREF1181_RS07830 0.38 -2.3 62,982 + HMPREF1181_RS07830 0.38 -1.3 62,983 - HMPREF1181_RS07830 0.38 -2.9 62,987 + HMPREF1181_RS07830 0.38 -2.3 62,987 + HMPREF1181_RS07830 0.38 -2.7 63,018 + HMPREF1181_RS07830 0.40 -2.4 63,018 + HMPREF1181_RS07830 0.40 +0.3 63,019 - HMPREF1181_RS07830 0.40 -2.4 63,029 - HMPREF1181_RS07830 0.40 -1.7 63,083 - HMPREF1181_RS07830 0.43 -0.9 63,083 - HMPREF1181_RS07830 0.43 -1.4 63,203 + HMPREF1181_RS07830 0.48 -4.4 63,203 + HMPREF1181_RS07830 0.48 -0.8 63,204 - HMPREF1181_RS07830 0.48 -2.1 63,236 + HMPREF1181_RS07830 0.49 -2.3 63,466 + HMPREF1181_RS07830 0.59 -1.1 63,503 - HMPREF1181_RS07830 0.61 -1.7 63,678 - HMPREF1181_RS07830 0.69 -2.0 63,780 - HMPREF1181_RS07830 0.73 -2.7 63,810 + HMPREF1181_RS07830 0.74 -1.6 64,001 + HMPREF1181_RS07830 0.83 -1.0 64,061 + HMPREF1181_RS07830 0.85 -1.5 64,061 + HMPREF1181_RS07830 0.85 -2.6 64,077 - HMPREF1181_RS07830 0.86 -3.1 64,189 + -1.9 64,224 - -3.0 64,330 + -2.6 64,336 - -1.2 64,350 + -1.9 64,456 + HMPREF1181_RS17825 0.36 +0.4 64,461 - HMPREF1181_RS17825 0.39 -1.3 64,461 - HMPREF1181_RS17825 0.39 -2.0 64,463 + HMPREF1181_RS17825 0.40 +1.1 64,542 - HMPREF1181_RS17825 0.86 -1.8 64,660 + -0.8 64,719 + -0.2 64,738 + -1.1 64,738 + -0.4 64,752 + -2.0 64,770 - -1.5 64,773 - -0.6 64,773 - -1.7 64,773 - -1.7 64,824 - -2.7 64,855 + -1.4 64,856 - -0.1 64,961 + HMPREF1181_RS07835 0.16 -0.9 64,962 - HMPREF1181_RS07835 0.16 -1.9 65,101 - HMPREF1181_RS07835 0.26 -2.3 65,288 - HMPREF1181_RS07835 0.40 -2.0 65,390 - HMPREF1181_RS07835 0.48 -1.3
Or see this region's nucleotide sequence