Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS05630 and HMPREF1181_RS05635 are separated by 157 nucleotides HMPREF1181_RS05635 and HMPREF1181_RS05640 are separated by 25 nucleotides HMPREF1181_RS05640 and HMPREF1181_RS05645 are separated by 14 nucleotides
HMPREF1181_RS05630: HMPREF1181_RS05630 - excinuclease ABC subunit UvrA, at 434,670 to 437,441
_RS05630
HMPREF1181_RS05635: HMPREF1181_RS05635 - hypothetical protein, at 437,599 to 438,078
_RS05635
HMPREF1181_RS05640: HMPREF1181_RS05640 - hypothetical protein, at 438,104 to 438,328
_RS05640
HMPREF1181_RS05645: HMPREF1181_RS05645 - carbon starvation protein A, at 438,343 to 439,758
_RS05645
Position (kb) 437
438
439 Strain fitness (log2 ratio) -2
-1
0
1
2 at 436.663 kb on + strand, within HMPREF1181_RS05630 at 436.719 kb on + strand, within HMPREF1181_RS05630 at 436.719 kb on + strand, within HMPREF1181_RS05630 at 436.724 kb on - strand, within HMPREF1181_RS05630 at 436.742 kb on - strand, within HMPREF1181_RS05630 at 436.786 kb on - strand, within HMPREF1181_RS05630 at 436.962 kb on - strand, within HMPREF1181_RS05630 at 436.965 kb on + strand, within HMPREF1181_RS05630 at 437.073 kb on + strand, within HMPREF1181_RS05630 at 437.074 kb on - strand, within HMPREF1181_RS05630 at 437.074 kb on - strand, within HMPREF1181_RS05630 at 437.075 kb on + strand, within HMPREF1181_RS05630 at 437.076 kb on - strand, within HMPREF1181_RS05630 at 437.139 kb on + strand, within HMPREF1181_RS05630 at 437.142 kb on + strand, within HMPREF1181_RS05630 at 437.150 kb on + strand, within HMPREF1181_RS05630 at 437.251 kb on + strand at 437.289 kb on - strand at 437.289 kb on - strand at 437.297 kb on - strand at 437.356 kb on - strand at 437.406 kb on + strand at 437.439 kb on + strand at 437.473 kb on + strand at 437.484 kb on - strand at 437.762 kb on + strand, within HMPREF1181_RS05635 at 437.794 kb on + strand, within HMPREF1181_RS05635 at 437.813 kb on + strand, within HMPREF1181_RS05635 at 437.841 kb on - strand, within HMPREF1181_RS05635 at 437.868 kb on + strand, within HMPREF1181_RS05635 at 437.958 kb on + strand, within HMPREF1181_RS05635 at 438.106 kb on - strand at 438.121 kb on + strand at 438.185 kb on + strand, within HMPREF1181_RS05640 at 438.213 kb on - strand, within HMPREF1181_RS05640 at 438.217 kb on - strand, within HMPREF1181_RS05640 at 438.283 kb on + strand, within HMPREF1181_RS05640 at 438.284 kb on - strand, within HMPREF1181_RS05640 at 438.380 kb on - strand at 438.464 kb on + strand at 438.464 kb on + strand at 438.464 kb on + strand at 438.465 kb on - strand at 438.465 kb on - strand at 438.604 kb on + strand, within HMPREF1181_RS05645 at 438.604 kb on + strand, within HMPREF1181_RS05645 at 438.605 kb on - strand, within HMPREF1181_RS05645 at 438.605 kb on - strand, within HMPREF1181_RS05645 at 438.638 kb on + strand, within HMPREF1181_RS05645 at 438.682 kb on - strand, within HMPREF1181_RS05645 at 438.682 kb on - strand, within HMPREF1181_RS05645 at 438.683 kb on + strand, within HMPREF1181_RS05645 at 438.684 kb on - strand, within HMPREF1181_RS05645 at 438.918 kb on + strand, within HMPREF1181_RS05645 at 438.958 kb on + strand, within HMPREF1181_RS05645 at 438.958 kb on + strand, within HMPREF1181_RS05645 at 439.070 kb on - strand, within HMPREF1181_RS05645
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 436,663 + HMPREF1181_RS05630 0.72 -1.1 436,719 + HMPREF1181_RS05630 0.74 +1.4 436,719 + HMPREF1181_RS05630 0.74 -0.6 436,724 - HMPREF1181_RS05630 0.74 -0.0 436,742 - HMPREF1181_RS05630 0.75 +0.8 436,786 - HMPREF1181_RS05630 0.76 -0.6 436,962 - HMPREF1181_RS05630 0.83 +1.0 436,965 + HMPREF1181_RS05630 0.83 +1.5 437,073 + HMPREF1181_RS05630 0.87 -1.3 437,074 - HMPREF1181_RS05630 0.87 -1.5 437,074 - HMPREF1181_RS05630 0.87 -1.8 437,075 + HMPREF1181_RS05630 0.87 +1.0 437,076 - HMPREF1181_RS05630 0.87 +1.0 437,139 + HMPREF1181_RS05630 0.89 -2.0 437,142 + HMPREF1181_RS05630 0.89 -1.6 437,150 + HMPREF1181_RS05630 0.89 -0.5 437,251 + -0.4 437,289 - -0.0 437,289 - -0.3 437,297 - -1.6 437,356 - +1.5 437,406 + +0.4 437,439 + -0.0 437,473 + -1.8 437,484 - -0.1 437,762 + HMPREF1181_RS05635 0.34 -0.6 437,794 + HMPREF1181_RS05635 0.41 +2.6 437,813 + HMPREF1181_RS05635 0.45 +2.2 437,841 - HMPREF1181_RS05635 0.50 -0.6 437,868 + HMPREF1181_RS05635 0.56 +0.1 437,958 + HMPREF1181_RS05635 0.75 -1.9 438,106 - -1.8 438,121 + +0.1 438,185 + HMPREF1181_RS05640 0.36 +0.8 438,213 - HMPREF1181_RS05640 0.48 +0.1 438,217 - HMPREF1181_RS05640 0.50 -2.5 438,283 + HMPREF1181_RS05640 0.80 +1.7 438,284 - HMPREF1181_RS05640 0.80 +1.6 438,380 - -0.7 438,464 + +2.0 438,464 + +0.4 438,464 + -1.9 438,465 - -1.0 438,465 - -2.5 438,604 + HMPREF1181_RS05645 0.18 -0.7 438,604 + HMPREF1181_RS05645 0.18 -2.0 438,605 - HMPREF1181_RS05645 0.19 -1.9 438,605 - HMPREF1181_RS05645 0.19 -1.8 438,638 + HMPREF1181_RS05645 0.21 +0.4 438,682 - HMPREF1181_RS05645 0.24 -2.4 438,682 - HMPREF1181_RS05645 0.24 -0.0 438,683 + HMPREF1181_RS05645 0.24 -0.4 438,684 - HMPREF1181_RS05645 0.24 -0.9 438,918 + HMPREF1181_RS05645 0.41 +1.4 438,958 + HMPREF1181_RS05645 0.43 -0.1 438,958 + HMPREF1181_RS05645 0.43 +0.8 439,070 - HMPREF1181_RS05645 0.51 -1.3
Or see this region's nucleotide sequence