Experiment: a-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS02895 and HMPREF1181_RS02900 are separated by 374 nucleotides HMPREF1181_RS02900 and HMPREF1181_RS02905 are separated by 32 nucleotides HMPREF1181_RS02905 and HMPREF1181_RS02910 are separated by 338 nucleotides
HMPREF1181_RS02895: HMPREF1181_RS02895 - peptide chain release factor 2, at 722,791 to 723,909
_RS02895
HMPREF1181_RS02900: HMPREF1181_RS02900 - CYTH domain-containing protein, at 724,284 to 724,754
_RS02900
HMPREF1181_RS02905: HMPREF1181_RS02905 - DUF4010 domain-containing protein, at 724,787 to 726,082
_RS02905
HMPREF1181_RS02910: HMPREF1181_RS02910 - glycoside hydrolase family 130 protein, at 726,421 to 727,464
_RS02910
Position (kb) 724
725
726
727 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 723.908 kb on - strand at 723.932 kb on - strand at 724.123 kb on + strand at 724.197 kb on - strand at 724.232 kb on + strand at 724.262 kb on + strand at 724.283 kb on + strand at 724.284 kb on - strand at 724.298 kb on - strand at 724.371 kb on - strand, within HMPREF1181_RS02900 at 724.408 kb on + strand, within HMPREF1181_RS02900 at 724.409 kb on - strand, within HMPREF1181_RS02900 at 724.538 kb on + strand, within HMPREF1181_RS02900 at 724.561 kb on + strand, within HMPREF1181_RS02900 at 724.589 kb on - strand, within HMPREF1181_RS02900 at 724.589 kb on - strand, within HMPREF1181_RS02900 at 724.621 kb on + strand, within HMPREF1181_RS02900 at 724.711 kb on - strand at 724.752 kb on + strand at 724.761 kb on + strand at 724.761 kb on + strand at 724.805 kb on + strand at 724.806 kb on - strand at 724.861 kb on - strand at 724.927 kb on + strand, within HMPREF1181_RS02905 at 725.081 kb on - strand, within HMPREF1181_RS02905 at 725.106 kb on - strand, within HMPREF1181_RS02905 at 725.147 kb on + strand, within HMPREF1181_RS02905 at 725.148 kb on - strand, within HMPREF1181_RS02905 at 725.148 kb on - strand, within HMPREF1181_RS02905 at 725.157 kb on + strand, within HMPREF1181_RS02905 at 725.169 kb on + strand, within HMPREF1181_RS02905 at 725.332 kb on + strand, within HMPREF1181_RS02905 at 725.333 kb on - strand, within HMPREF1181_RS02905 at 725.333 kb on - strand, within HMPREF1181_RS02905 at 725.335 kb on - strand, within HMPREF1181_RS02905 at 725.335 kb on - strand, within HMPREF1181_RS02905 at 725.335 kb on - strand, within HMPREF1181_RS02905 at 725.393 kb on + strand, within HMPREF1181_RS02905 at 725.394 kb on - strand, within HMPREF1181_RS02905 at 725.398 kb on - strand, within HMPREF1181_RS02905 at 725.433 kb on + strand, within HMPREF1181_RS02905 at 725.444 kb on + strand, within HMPREF1181_RS02905 at 725.445 kb on - strand, within HMPREF1181_RS02905 at 725.581 kb on - strand, within HMPREF1181_RS02905 at 725.625 kb on + strand, within HMPREF1181_RS02905 at 725.686 kb on + strand, within HMPREF1181_RS02905 at 725.943 kb on + strand, within HMPREF1181_RS02905 at 725.962 kb on + strand at 726.080 kb on + strand at 726.081 kb on + strand at 726.144 kb on + strand at 726.145 kb on - strand at 726.145 kb on - strand at 726.176 kb on + strand at 726.176 kb on + strand at 726.177 kb on - strand at 726.182 kb on - strand at 726.190 kb on - strand at 726.200 kb on - strand at 726.200 kb on - strand at 726.200 kb on - strand at 726.221 kb on - strand at 726.265 kb on - strand at 726.303 kb on + strand at 726.353 kb on - strand at 726.358 kb on - strand at 726.368 kb on + strand at 726.383 kb on + strand at 726.400 kb on + strand at 726.421 kb on - strand at 726.427 kb on - strand at 726.428 kb on + strand at 726.428 kb on + strand at 726.429 kb on - strand at 726.486 kb on - strand at 726.500 kb on + strand at 726.578 kb on + strand, within HMPREF1181_RS02910 at 726.578 kb on + strand, within HMPREF1181_RS02910 at 726.598 kb on - strand, within HMPREF1181_RS02910 at 726.607 kb on - strand, within HMPREF1181_RS02910 at 726.609 kb on - strand, within HMPREF1181_RS02910 at 726.611 kb on - strand, within HMPREF1181_RS02910 at 726.611 kb on - strand, within HMPREF1181_RS02910 at 726.611 kb on - strand, within HMPREF1181_RS02910 at 726.611 kb on - strand, within HMPREF1181_RS02910 at 726.611 kb on - strand, within HMPREF1181_RS02910 at 726.624 kb on + strand, within HMPREF1181_RS02910 at 726.731 kb on + strand, within HMPREF1181_RS02910 at 726.732 kb on - strand, within HMPREF1181_RS02910 at 726.732 kb on - strand, within HMPREF1181_RS02910 at 726.918 kb on + strand, within HMPREF1181_RS02910 at 726.953 kb on + strand, within HMPREF1181_RS02910 at 726.966 kb on + strand, within HMPREF1181_RS02910 at 726.967 kb on - strand, within HMPREF1181_RS02910 at 726.969 kb on + strand, within HMPREF1181_RS02910 at 726.998 kb on + strand, within HMPREF1181_RS02910 at 727.051 kb on - strand, within HMPREF1181_RS02910 at 727.055 kb on - strand, within HMPREF1181_RS02910 at 727.056 kb on + strand, within HMPREF1181_RS02910
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/mL (C) remove 723,908 - -0.4 723,932 - +1.4 724,123 + +0.7 724,197 - +0.3 724,232 + -1.0 724,262 + +1.6 724,283 + +1.5 724,284 - +0.4 724,298 - +0.1 724,371 - HMPREF1181_RS02900 0.18 -1.1 724,408 + HMPREF1181_RS02900 0.26 -0.1 724,409 - HMPREF1181_RS02900 0.27 -0.8 724,538 + HMPREF1181_RS02900 0.54 -0.6 724,561 + HMPREF1181_RS02900 0.59 -0.4 724,589 - HMPREF1181_RS02900 0.65 -0.9 724,589 - HMPREF1181_RS02900 0.65 -1.0 724,621 + HMPREF1181_RS02900 0.72 -2.2 724,711 - -0.7 724,752 + +0.2 724,761 + -1.8 724,761 + -1.5 724,805 + +1.9 724,806 - -0.9 724,861 - -1.6 724,927 + HMPREF1181_RS02905 0.11 -1.5 725,081 - HMPREF1181_RS02905 0.23 -1.5 725,106 - HMPREF1181_RS02905 0.25 +0.4 725,147 + HMPREF1181_RS02905 0.28 -0.0 725,148 - HMPREF1181_RS02905 0.28 -1.7 725,148 - HMPREF1181_RS02905 0.28 -2.3 725,157 + HMPREF1181_RS02905 0.29 +0.9 725,169 + HMPREF1181_RS02905 0.29 -1.0 725,332 + HMPREF1181_RS02905 0.42 +0.2 725,333 - HMPREF1181_RS02905 0.42 +1.0 725,333 - HMPREF1181_RS02905 0.42 -3.5 725,335 - HMPREF1181_RS02905 0.42 +0.4 725,335 - HMPREF1181_RS02905 0.42 -1.4 725,335 - HMPREF1181_RS02905 0.42 +0.7 725,393 + HMPREF1181_RS02905 0.47 -1.2 725,394 - HMPREF1181_RS02905 0.47 -1.8 725,398 - HMPREF1181_RS02905 0.47 +1.7 725,433 + HMPREF1181_RS02905 0.50 +1.4 725,444 + HMPREF1181_RS02905 0.51 +0.4 725,445 - HMPREF1181_RS02905 0.51 -0.6 725,581 - HMPREF1181_RS02905 0.61 -0.8 725,625 + HMPREF1181_RS02905 0.65 -0.7 725,686 + HMPREF1181_RS02905 0.69 -1.3 725,943 + HMPREF1181_RS02905 0.89 -0.9 725,962 + +2.3 726,080 + -0.3 726,081 + +1.6 726,144 + -1.5 726,145 - -2.1 726,145 - -0.2 726,176 + -2.1 726,176 + -0.8 726,177 - +0.5 726,182 - -2.8 726,190 - +1.4 726,200 - +0.0 726,200 - -1.0 726,200 - +0.7 726,221 - -1.1 726,265 - -0.2 726,303 + +1.7 726,353 - +0.6 726,358 - +0.2 726,368 + +1.1 726,383 + +1.0 726,400 + -0.3 726,421 - -1.2 726,427 - -0.2 726,428 + -1.1 726,428 + +0.4 726,429 - -0.4 726,486 - +0.7 726,500 + +2.4 726,578 + HMPREF1181_RS02910 0.15 -0.8 726,578 + HMPREF1181_RS02910 0.15 -2.4 726,598 - HMPREF1181_RS02910 0.17 +1.3 726,607 - HMPREF1181_RS02910 0.18 -2.2 726,609 - HMPREF1181_RS02910 0.18 -1.4 726,611 - HMPREF1181_RS02910 0.18 +0.9 726,611 - HMPREF1181_RS02910 0.18 +0.7 726,611 - HMPREF1181_RS02910 0.18 -1.1 726,611 - HMPREF1181_RS02910 0.18 +1.7 726,611 - HMPREF1181_RS02910 0.18 -2.0 726,624 + HMPREF1181_RS02910 0.19 +0.6 726,731 + HMPREF1181_RS02910 0.30 -0.6 726,732 - HMPREF1181_RS02910 0.30 +3.4 726,732 - HMPREF1181_RS02910 0.30 +1.1 726,918 + HMPREF1181_RS02910 0.48 +0.2 726,953 + HMPREF1181_RS02910 0.51 +0.9 726,966 + HMPREF1181_RS02910 0.52 +0.2 726,967 - HMPREF1181_RS02910 0.52 -1.0 726,969 + HMPREF1181_RS02910 0.52 -1.0 726,998 + HMPREF1181_RS02910 0.55 -1.4 727,051 - HMPREF1181_RS02910 0.60 +1.5 727,055 - HMPREF1181_RS02910 0.61 +1.2 727,056 + HMPREF1181_RS02910 0.61 -1.5
Or see this region's nucleotide sequence