Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS06960 and HMPREF1181_RS06965 overlap by 1 nucleotides HMPREF1181_RS06965 and HMPREF1181_RS06970 are separated by 169 nucleotides HMPREF1181_RS06970 and HMPREF1181_RS06975 are separated by 90 nucleotides
HMPREF1181_RS06960: HMPREF1181_RS06960 - fumarylacetoacetate hydrolase family protein, at 784,493 to 785,110
_RS06960
HMPREF1181_RS06965: HMPREF1181_RS06965 - redox-sensing transcriptional repressor Rex, at 785,110 to 785,766
_RS06965
HMPREF1181_RS06970: HMPREF1181_RS06970 - translation initiation factor, at 785,936 to 786,295
_RS06970
HMPREF1181_RS06975: HMPREF1181_RS06975 - elongation factor Ts, at 786,386 to 787,378
_RS06975
Position (kb) 785
786
787 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 784.950 kb on + strand, within HMPREF1181_RS06960 at 785.029 kb on + strand, within HMPREF1181_RS06960 at 785.163 kb on - strand at 785.186 kb on - strand, within HMPREF1181_RS06965 at 785.186 kb on - strand, within HMPREF1181_RS06965 at 785.187 kb on + strand, within HMPREF1181_RS06965 at 785.187 kb on + strand, within HMPREF1181_RS06965 at 785.227 kb on + strand, within HMPREF1181_RS06965 at 785.283 kb on + strand, within HMPREF1181_RS06965 at 785.315 kb on + strand, within HMPREF1181_RS06965 at 785.316 kb on - strand, within HMPREF1181_RS06965 at 785.396 kb on - strand, within HMPREF1181_RS06965 at 785.494 kb on - strand, within HMPREF1181_RS06965 at 785.497 kb on + strand, within HMPREF1181_RS06965 at 785.545 kb on + strand, within HMPREF1181_RS06965 at 785.546 kb on - strand, within HMPREF1181_RS06965 at 785.546 kb on - strand, within HMPREF1181_RS06965 at 785.586 kb on - strand, within HMPREF1181_RS06965 at 785.586 kb on - strand, within HMPREF1181_RS06965 at 785.736 kb on + strand at 785.778 kb on + strand at 785.826 kb on + strand at 785.826 kb on + strand at 785.833 kb on + strand at 785.833 kb on + strand at 785.833 kb on + strand at 785.834 kb on - strand at 785.834 kb on - strand at 785.834 kb on - strand at 785.834 kb on - strand at 785.856 kb on + strand at 785.857 kb on - strand at 785.857 kb on - strand at 785.932 kb on - strand at 785.933 kb on + strand at 785.935 kb on + strand at 785.941 kb on + strand at 785.983 kb on - strand, within HMPREF1181_RS06970 at 785.987 kb on + strand, within HMPREF1181_RS06970 at 786.176 kb on - strand, within HMPREF1181_RS06970 at 786.219 kb on + strand, within HMPREF1181_RS06970 at 786.253 kb on - strand, within HMPREF1181_RS06970 at 786.255 kb on + strand, within HMPREF1181_RS06970 at 786.272 kb on - strand at 786.272 kb on - strand at 786.317 kb on + strand at 786.321 kb on - strand at 786.371 kb on + strand at 786.387 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C) remove 784,950 + HMPREF1181_RS06960 0.74 +0.9 785,029 + HMPREF1181_RS06960 0.87 +0.9 785,163 - +0.0 785,186 - HMPREF1181_RS06965 0.12 -1.5 785,186 - HMPREF1181_RS06965 0.12 +1.5 785,187 + HMPREF1181_RS06965 0.12 +2.6 785,187 + HMPREF1181_RS06965 0.12 -1.0 785,227 + HMPREF1181_RS06965 0.18 +5.2 785,283 + HMPREF1181_RS06965 0.26 +3.2 785,315 + HMPREF1181_RS06965 0.31 -0.1 785,316 - HMPREF1181_RS06965 0.31 +0.8 785,396 - HMPREF1181_RS06965 0.44 -1.2 785,494 - HMPREF1181_RS06965 0.58 +0.4 785,497 + HMPREF1181_RS06965 0.59 -0.2 785,545 + HMPREF1181_RS06965 0.66 +3.9 785,546 - HMPREF1181_RS06965 0.66 +2.2 785,546 - HMPREF1181_RS06965 0.66 -1.0 785,586 - HMPREF1181_RS06965 0.72 +2.0 785,586 - HMPREF1181_RS06965 0.72 +0.7 785,736 + +0.9 785,778 + -1.7 785,826 + +0.3 785,826 + +1.5 785,833 + +0.7 785,833 + +0.7 785,833 + -0.3 785,834 - -1.9 785,834 - +0.1 785,834 - +0.8 785,834 - -0.3 785,856 + -1.2 785,857 - +0.1 785,857 - -0.8 785,932 - -1.1 785,933 + -2.3 785,935 + +0.2 785,941 + -1.5 785,983 - HMPREF1181_RS06970 0.13 -1.6 785,987 + HMPREF1181_RS06970 0.14 -2.2 786,176 - HMPREF1181_RS06970 0.67 -1.1 786,219 + HMPREF1181_RS06970 0.79 -0.4 786,253 - HMPREF1181_RS06970 0.88 +0.1 786,255 + HMPREF1181_RS06970 0.89 -0.2 786,272 - -1.0 786,272 - -0.3 786,317 + -0.6 786,321 - -1.3 786,371 + -1.1 786,387 + +0.2
Or see this region's nucleotide sequence