Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS02440 and HMPREF1181_RS02445 are separated by 112 nucleotides HMPREF1181_RS02445 and HMPREF1181_RS02450 are separated by 99 nucleotides HMPREF1181_RS02450 and HMPREF1181_RS02455 are separated by 19 nucleotides
HMPREF1181_RS02440: HMPREF1181_RS02440 - 4-phosphoerythronate dehydrogenase PdxB, at 613,199 to 614,248
_RS02440
HMPREF1181_RS02445: HMPREF1181_RS02445 - ORF6N domain-containing protein, at 614,361 to 614,909
_RS02445
HMPREF1181_RS02450: HMPREF1181_RS02450 - hypothetical protein, at 615,009 to 615,725
_RS02450
HMPREF1181_RS02455: HMPREF1181_RS02455 - hypothetical protein, at 615,745 to 616,497
_RS02455
Position (kb) 614
615 Strain fitness (log2 ratio) -2
-1
0
1 at 614.311 kb on + strand at 614.314 kb on + strand at 614.315 kb on - strand at 614.347 kb on - strand at 614.357 kb on - strand at 614.357 kb on - strand at 614.389 kb on + strand at 614.406 kb on - strand at 614.455 kb on - strand, within HMPREF1181_RS02445 at 614.521 kb on - strand, within HMPREF1181_RS02445 at 614.523 kb on - strand, within HMPREF1181_RS02445 at 614.631 kb on + strand, within HMPREF1181_RS02445 at 614.634 kb on - strand, within HMPREF1181_RS02445 at 614.813 kb on + strand, within HMPREF1181_RS02445 at 614.872 kb on + strand at 614.873 kb on - strand at 614.907 kb on + strand at 614.993 kb on + strand at 614.997 kb on + strand at 615.559 kb on + strand, within HMPREF1181_RS02450 at 615.559 kb on + strand, within HMPREF1181_RS02450 at 615.668 kb on + strand at 615.684 kb on + strand at 615.728 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/mL (C) remove 614,311 + -1.4 614,314 + +0.3 614,315 - +0.3 614,347 - -0.9 614,357 - +1.3 614,357 - -1.4 614,389 + +0.1 614,406 - +0.6 614,455 - HMPREF1181_RS02445 0.17 +0.4 614,521 - HMPREF1181_RS02445 0.29 +0.4 614,523 - HMPREF1181_RS02445 0.30 -0.4 614,631 + HMPREF1181_RS02445 0.49 +0.2 614,634 - HMPREF1181_RS02445 0.50 -1.4 614,813 + HMPREF1181_RS02445 0.82 +0.1 614,872 + +0.6 614,873 - +0.5 614,907 + +1.7 614,993 + -1.0 614,997 + +1.2 615,559 + HMPREF1181_RS02450 0.77 -2.2 615,559 + HMPREF1181_RS02450 0.77 -0.4 615,668 + -1.2 615,684 + -0.0 615,728 + +0.9
Or see this region's nucleotide sequence