Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS14855 and HMPREF1181_RS14860 are separated by 181 nucleotides HMPREF1181_RS14860 and HMPREF1181_RS14865 are separated by 11 nucleotides HMPREF1181_RS14865 and HMPREF1181_RS14870 are separated by 21 nucleotides HMPREF1181_RS14870 and HMPREF1181_RS14875 are separated by 47 nucleotides
HMPREF1181_RS14855: HMPREF1181_RS14855 - transglycosylase domain-containing protein, at 154,591 to 156,918
_RS14855
HMPREF1181_RS14860: HMPREF1181_RS14860 - hypothetical protein, at 157,100 to 157,795
_RS14860
HMPREF1181_RS14865: HMPREF1181_RS14865 - tyrosine-protein kinase, at 157,807 to 160,233
_RS14865
HMPREF1181_RS14870: HMPREF1181_RS14870 - polysaccharide biosynthesis/export family protein, at 160,255 to 161,052
_RS14870
HMPREF1181_RS14875: HMPREF1181_RS14875 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 161,100 to 162,239
_RS14875
Position (kb) 157
158
159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 157.206 kb on + strand, within HMPREF1181_RS14860 at 157.206 kb on + strand, within HMPREF1181_RS14860 at 157.207 kb on - strand, within HMPREF1181_RS14860 at 157.207 kb on - strand, within HMPREF1181_RS14860 at 157.207 kb on - strand, within HMPREF1181_RS14860 at 157.207 kb on - strand, within HMPREF1181_RS14860 at 157.207 kb on - strand, within HMPREF1181_RS14860 at 157.207 kb on - strand, within HMPREF1181_RS14860 at 157.257 kb on + strand, within HMPREF1181_RS14860 at 157.296 kb on + strand, within HMPREF1181_RS14860 at 157.337 kb on - strand, within HMPREF1181_RS14860 at 157.338 kb on + strand, within HMPREF1181_RS14860 at 157.339 kb on - strand, within HMPREF1181_RS14860 at 157.344 kb on + strand, within HMPREF1181_RS14860 at 157.373 kb on - strand, within HMPREF1181_RS14860 at 157.395 kb on + strand, within HMPREF1181_RS14860 at 157.395 kb on + strand, within HMPREF1181_RS14860 at 157.396 kb on - strand, within HMPREF1181_RS14860 at 157.449 kb on - strand, within HMPREF1181_RS14860 at 157.513 kb on + strand, within HMPREF1181_RS14860 at 157.513 kb on + strand, within HMPREF1181_RS14860 at 157.514 kb on - strand, within HMPREF1181_RS14860 at 157.515 kb on + strand, within HMPREF1181_RS14860 at 157.535 kb on + strand, within HMPREF1181_RS14860 at 157.551 kb on + strand, within HMPREF1181_RS14860 at 157.551 kb on + strand, within HMPREF1181_RS14860 at 157.552 kb on - strand, within HMPREF1181_RS14860 at 157.568 kb on - strand, within HMPREF1181_RS14860 at 157.694 kb on + strand, within HMPREF1181_RS14860 at 157.796 kb on - strand at 157.801 kb on + strand at 157.912 kb on + strand at 157.917 kb on - strand at 157.945 kb on - strand at 158.020 kb on + strand at 158.024 kb on + strand at 158.025 kb on - strand at 158.025 kb on - strand at 158.025 kb on - strand at 158.078 kb on + strand, within HMPREF1181_RS14865 at 158.079 kb on - strand, within HMPREF1181_RS14865 at 158.101 kb on - strand, within HMPREF1181_RS14865 at 158.102 kb on + strand, within HMPREF1181_RS14865 at 158.108 kb on + strand, within HMPREF1181_RS14865 at 158.108 kb on + strand, within HMPREF1181_RS14865 at 158.109 kb on - strand, within HMPREF1181_RS14865 at 158.194 kb on - strand, within HMPREF1181_RS14865 at 158.194 kb on - strand, within HMPREF1181_RS14865 at 158.194 kb on - strand, within HMPREF1181_RS14865 at 158.194 kb on - strand, within HMPREF1181_RS14865 at 158.267 kb on + strand, within HMPREF1181_RS14865 at 158.293 kb on - strand, within HMPREF1181_RS14865 at 158.296 kb on + strand, within HMPREF1181_RS14865 at 158.297 kb on - strand, within HMPREF1181_RS14865 at 158.350 kb on + strand, within HMPREF1181_RS14865 at 158.356 kb on + strand, within HMPREF1181_RS14865 at 158.397 kb on + strand, within HMPREF1181_RS14865 at 158.560 kb on - strand, within HMPREF1181_RS14865 at 158.679 kb on + strand, within HMPREF1181_RS14865 at 158.758 kb on + strand, within HMPREF1181_RS14865 at 158.758 kb on + strand, within HMPREF1181_RS14865 at 158.759 kb on - strand, within HMPREF1181_RS14865 at 158.759 kb on - strand, within HMPREF1181_RS14865 at 158.845 kb on + strand, within HMPREF1181_RS14865 at 158.863 kb on + strand, within HMPREF1181_RS14865 at 158.870 kb on - strand, within HMPREF1181_RS14865 at 158.870 kb on - strand, within HMPREF1181_RS14865 at 158.876 kb on + strand, within HMPREF1181_RS14865 at 158.908 kb on - strand, within HMPREF1181_RS14865 at 158.908 kb on - strand, within HMPREF1181_RS14865 at 158.951 kb on - strand, within HMPREF1181_RS14865 at 159.052 kb on - strand, within HMPREF1181_RS14865 at 159.052 kb on - strand, within HMPREF1181_RS14865 at 159.124 kb on - strand, within HMPREF1181_RS14865 at 159.124 kb on - strand, within HMPREF1181_RS14865 at 159.130 kb on + strand, within HMPREF1181_RS14865 at 159.131 kb on - strand, within HMPREF1181_RS14865 at 159.182 kb on + strand, within HMPREF1181_RS14865 at 159.192 kb on + strand, within HMPREF1181_RS14865 at 159.192 kb on + strand, within HMPREF1181_RS14865 at 159.194 kb on + strand, within HMPREF1181_RS14865 at 159.194 kb on + strand, within HMPREF1181_RS14865 at 159.195 kb on - strand, within HMPREF1181_RS14865 at 159.207 kb on + strand, within HMPREF1181_RS14865 at 159.208 kb on - strand, within HMPREF1181_RS14865 at 159.264 kb on - strand, within HMPREF1181_RS14865 at 159.312 kb on - strand, within HMPREF1181_RS14865 at 159.388 kb on - strand, within HMPREF1181_RS14865 at 159.392 kb on - strand, within HMPREF1181_RS14865 at 159.431 kb on + strand, within HMPREF1181_RS14865 at 159.454 kb on + strand, within HMPREF1181_RS14865 at 159.546 kb on + strand, within HMPREF1181_RS14865 at 159.546 kb on + strand, within HMPREF1181_RS14865 at 159.546 kb on + strand, within HMPREF1181_RS14865 at 159.547 kb on - strand, within HMPREF1181_RS14865 at 159.547 kb on - strand, within HMPREF1181_RS14865 at 159.547 kb on - strand, within HMPREF1181_RS14865 at 159.547 kb on - strand, within HMPREF1181_RS14865 at 159.547 kb on - strand, within HMPREF1181_RS14865 at 159.587 kb on + strand, within HMPREF1181_RS14865 at 159.587 kb on + strand, within HMPREF1181_RS14865 at 159.667 kb on - strand, within HMPREF1181_RS14865 at 159.781 kb on + strand, within HMPREF1181_RS14865 at 159.781 kb on + strand, within HMPREF1181_RS14865 at 159.781 kb on + strand, within HMPREF1181_RS14865 at 159.782 kb on - strand, within HMPREF1181_RS14865 at 159.782 kb on - strand, within HMPREF1181_RS14865 at 159.834 kb on + strand, within HMPREF1181_RS14865 at 159.834 kb on + strand, within HMPREF1181_RS14865 at 159.836 kb on + strand, within HMPREF1181_RS14865 at 159.870 kb on + strand, within HMPREF1181_RS14865 at 159.872 kb on + strand, within HMPREF1181_RS14865 at 159.872 kb on + strand, within HMPREF1181_RS14865 at 159.873 kb on - strand, within HMPREF1181_RS14865 at 159.879 kb on + strand, within HMPREF1181_RS14865 at 159.892 kb on + strand, within HMPREF1181_RS14865 at 159.928 kb on - strand, within HMPREF1181_RS14865 at 159.949 kb on + strand, within HMPREF1181_RS14865 at 160.137 kb on - strand at 160.266 kb on + strand at 160.267 kb on - strand at 160.282 kb on + strand at 160.311 kb on + strand at 160.315 kb on + strand at 160.315 kb on + strand at 160.316 kb on - strand at 160.374 kb on - strand, within HMPREF1181_RS14870 at 160.378 kb on + strand, within HMPREF1181_RS14870 at 160.398 kb on - strand, within HMPREF1181_RS14870 at 160.401 kb on - strand, within HMPREF1181_RS14870 at 160.418 kb on - strand, within HMPREF1181_RS14870 at 160.484 kb on - strand, within HMPREF1181_RS14870 at 160.485 kb on + strand, within HMPREF1181_RS14870 at 160.603 kb on + strand, within HMPREF1181_RS14870 at 160.660 kb on + strand, within HMPREF1181_RS14870 at 160.679 kb on + strand, within HMPREF1181_RS14870 at 160.680 kb on - strand, within HMPREF1181_RS14870 at 160.812 kb on + strand, within HMPREF1181_RS14870 at 160.816 kb on + strand, within HMPREF1181_RS14870 at 160.816 kb on + strand, within HMPREF1181_RS14870 at 160.828 kb on + strand, within HMPREF1181_RS14870 at 160.828 kb on + strand, within HMPREF1181_RS14870 at 160.872 kb on + strand, within HMPREF1181_RS14870 at 161.009 kb on - strand at 161.009 kb on - strand at 161.012 kb on - strand at 161.012 kb on - strand at 161.020 kb on + strand at 161.021 kb on - strand at 161.024 kb on + strand at 161.025 kb on - strand at 161.030 kb on + strand at 161.053 kb on - strand at 161.053 kb on - strand at 161.147 kb on + strand at 161.187 kb on + strand at 161.188 kb on - strand at 161.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C) remove 157,206 + HMPREF1181_RS14860 0.15 +0.0 157,206 + HMPREF1181_RS14860 0.15 -2.5 157,207 - HMPREF1181_RS14860 0.15 -0.2 157,207 - HMPREF1181_RS14860 0.15 -1.9 157,207 - HMPREF1181_RS14860 0.15 -0.5 157,207 - HMPREF1181_RS14860 0.15 -0.9 157,207 - HMPREF1181_RS14860 0.15 -0.2 157,207 - HMPREF1181_RS14860 0.15 -1.8 157,257 + HMPREF1181_RS14860 0.23 +0.2 157,296 + HMPREF1181_RS14860 0.28 -1.6 157,337 - HMPREF1181_RS14860 0.34 -0.0 157,338 + HMPREF1181_RS14860 0.34 -0.7 157,339 - HMPREF1181_RS14860 0.34 -0.2 157,344 + HMPREF1181_RS14860 0.35 -1.7 157,373 - HMPREF1181_RS14860 0.39 -2.4 157,395 + HMPREF1181_RS14860 0.42 -1.1 157,395 + HMPREF1181_RS14860 0.42 -0.3 157,396 - HMPREF1181_RS14860 0.43 +0.2 157,449 - HMPREF1181_RS14860 0.50 +0.3 157,513 + HMPREF1181_RS14860 0.59 +0.1 157,513 + HMPREF1181_RS14860 0.59 -0.7 157,514 - HMPREF1181_RS14860 0.59 +1.3 157,515 + HMPREF1181_RS14860 0.60 -2.2 157,535 + HMPREF1181_RS14860 0.62 +1.0 157,551 + HMPREF1181_RS14860 0.65 -2.8 157,551 + HMPREF1181_RS14860 0.65 -0.4 157,552 - HMPREF1181_RS14860 0.65 -0.9 157,568 - HMPREF1181_RS14860 0.67 -0.9 157,694 + HMPREF1181_RS14860 0.85 -0.5 157,796 - -1.5 157,801 + -1.1 157,912 + -1.4 157,917 - +0.1 157,945 - -0.8 158,020 + -1.4 158,024 + -2.1 158,025 - -1.3 158,025 - -2.3 158,025 - -0.3 158,078 + HMPREF1181_RS14865 0.11 -0.3 158,079 - HMPREF1181_RS14865 0.11 -1.3 158,101 - HMPREF1181_RS14865 0.12 -0.3 158,102 + HMPREF1181_RS14865 0.12 -2.1 158,108 + HMPREF1181_RS14865 0.12 -1.8 158,108 + HMPREF1181_RS14865 0.12 -0.7 158,109 - HMPREF1181_RS14865 0.12 -2.4 158,194 - HMPREF1181_RS14865 0.16 -1.0 158,194 - HMPREF1181_RS14865 0.16 -2.5 158,194 - HMPREF1181_RS14865 0.16 -0.8 158,194 - HMPREF1181_RS14865 0.16 -2.3 158,267 + HMPREF1181_RS14865 0.19 -2.1 158,293 - HMPREF1181_RS14865 0.20 -0.2 158,296 + HMPREF1181_RS14865 0.20 -1.2 158,297 - HMPREF1181_RS14865 0.20 -2.9 158,350 + HMPREF1181_RS14865 0.22 +0.2 158,356 + HMPREF1181_RS14865 0.23 -0.0 158,397 + HMPREF1181_RS14865 0.24 -0.7 158,560 - HMPREF1181_RS14865 0.31 -0.8 158,679 + HMPREF1181_RS14865 0.36 -1.1 158,758 + HMPREF1181_RS14865 0.39 +0.3 158,758 + HMPREF1181_RS14865 0.39 -1.2 158,759 - HMPREF1181_RS14865 0.39 -0.6 158,759 - HMPREF1181_RS14865 0.39 +1.5 158,845 + HMPREF1181_RS14865 0.43 -1.2 158,863 + HMPREF1181_RS14865 0.44 -2.1 158,870 - HMPREF1181_RS14865 0.44 -0.5 158,870 - HMPREF1181_RS14865 0.44 -1.8 158,876 + HMPREF1181_RS14865 0.44 -1.6 158,908 - HMPREF1181_RS14865 0.45 -2.1 158,908 - HMPREF1181_RS14865 0.45 -2.5 158,951 - HMPREF1181_RS14865 0.47 +0.3 159,052 - HMPREF1181_RS14865 0.51 -2.0 159,052 - HMPREF1181_RS14865 0.51 -2.5 159,124 - HMPREF1181_RS14865 0.54 -1.3 159,124 - HMPREF1181_RS14865 0.54 -0.7 159,130 + HMPREF1181_RS14865 0.55 -1.8 159,131 - HMPREF1181_RS14865 0.55 -1.6 159,182 + HMPREF1181_RS14865 0.57 -1.8 159,192 + HMPREF1181_RS14865 0.57 -3.0 159,192 + HMPREF1181_RS14865 0.57 -2.8 159,194 + HMPREF1181_RS14865 0.57 -0.9 159,194 + HMPREF1181_RS14865 0.57 -0.3 159,195 - HMPREF1181_RS14865 0.57 -2.2 159,207 + HMPREF1181_RS14865 0.58 +0.3 159,208 - HMPREF1181_RS14865 0.58 -0.8 159,264 - HMPREF1181_RS14865 0.60 -0.2 159,312 - HMPREF1181_RS14865 0.62 -0.2 159,388 - HMPREF1181_RS14865 0.65 -2.0 159,392 - HMPREF1181_RS14865 0.65 +0.5 159,431 + HMPREF1181_RS14865 0.67 -2.4 159,454 + HMPREF1181_RS14865 0.68 -1.3 159,546 + HMPREF1181_RS14865 0.72 -0.9 159,546 + HMPREF1181_RS14865 0.72 -0.3 159,546 + HMPREF1181_RS14865 0.72 -1.3 159,547 - HMPREF1181_RS14865 0.72 -2.4 159,547 - HMPREF1181_RS14865 0.72 +0.6 159,547 - HMPREF1181_RS14865 0.72 -1.6 159,547 - HMPREF1181_RS14865 0.72 -0.9 159,547 - HMPREF1181_RS14865 0.72 +0.5 159,587 + HMPREF1181_RS14865 0.73 -2.9 159,587 + HMPREF1181_RS14865 0.73 -1.2 159,667 - HMPREF1181_RS14865 0.77 -2.7 159,781 + HMPREF1181_RS14865 0.81 -2.3 159,781 + HMPREF1181_RS14865 0.81 -1.6 159,781 + HMPREF1181_RS14865 0.81 -2.7 159,782 - HMPREF1181_RS14865 0.81 -0.8 159,782 - HMPREF1181_RS14865 0.81 -2.7 159,834 + HMPREF1181_RS14865 0.84 -0.7 159,834 + HMPREF1181_RS14865 0.84 -1.2 159,836 + HMPREF1181_RS14865 0.84 -0.8 159,870 + HMPREF1181_RS14865 0.85 -0.4 159,872 + HMPREF1181_RS14865 0.85 -2.8 159,872 + HMPREF1181_RS14865 0.85 -1.3 159,873 - HMPREF1181_RS14865 0.85 -0.8 159,879 + HMPREF1181_RS14865 0.85 +0.6 159,892 + HMPREF1181_RS14865 0.86 -1.5 159,928 - HMPREF1181_RS14865 0.87 -2.0 159,949 + HMPREF1181_RS14865 0.88 -2.7 160,137 - -1.1 160,266 + -1.2 160,267 - -1.0 160,282 + -1.1 160,311 + -0.9 160,315 + -1.7 160,315 + +0.1 160,316 - -2.3 160,374 - HMPREF1181_RS14870 0.15 -2.5 160,378 + HMPREF1181_RS14870 0.15 -1.2 160,398 - HMPREF1181_RS14870 0.18 -0.1 160,401 - HMPREF1181_RS14870 0.18 -1.6 160,418 - HMPREF1181_RS14870 0.20 -2.2 160,484 - HMPREF1181_RS14870 0.29 +0.3 160,485 + HMPREF1181_RS14870 0.29 -1.8 160,603 + HMPREF1181_RS14870 0.44 -0.8 160,660 + HMPREF1181_RS14870 0.51 -0.3 160,679 + HMPREF1181_RS14870 0.53 -1.7 160,680 - HMPREF1181_RS14870 0.53 -0.4 160,812 + HMPREF1181_RS14870 0.70 -1.6 160,816 + HMPREF1181_RS14870 0.70 +0.2 160,816 + HMPREF1181_RS14870 0.70 -0.9 160,828 + HMPREF1181_RS14870 0.72 -0.1 160,828 + HMPREF1181_RS14870 0.72 -1.8 160,872 + HMPREF1181_RS14870 0.77 +0.4 161,009 - -1.8 161,009 - -0.7 161,012 - -1.4 161,012 - -3.0 161,020 + -1.1 161,021 - -0.4 161,024 + -0.5 161,025 - -1.2 161,030 + -1.1 161,053 - -2.0 161,053 - -0.4 161,147 + -0.1 161,187 + -1.3 161,188 - -0.8 161,213 + -1.1
Or see this region's nucleotide sequence