Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS09045 and HMPREF1181_RS09050 are separated by 92 nucleotides HMPREF1181_RS09050 and HMPREF1181_RS18090 are separated by 183 nucleotides HMPREF1181_RS18090 and HMPREF1181_RS09055 are separated by 139 nucleotides
HMPREF1181_RS09045: HMPREF1181_RS09045 - NADH-quinone oxidoreductase subunit N, at 410,785 to 412,224
_RS09045
HMPREF1181_RS09050: HMPREF1181_RS09050 - helix-turn-helix domain-containing protein, at 412,317 to 413,186
_RS09050
HMPREF1181_RS18090: HMPREF1181_RS18090 - hypothetical protein, at 413,370 to 413,528
_RS18090
HMPREF1181_RS09055: HMPREF1181_RS09055 - mannonate dehydratase, at 413,668 to 414,855
_RS09055
Position (kb) 412
413
414 Strain fitness (log2 ratio) -1
0
1
2 at 411.337 kb on + strand, within HMPREF1181_RS09045 at 411.338 kb on - strand, within HMPREF1181_RS09045 at 411.338 kb on - strand, within HMPREF1181_RS09045 at 411.405 kb on + strand, within HMPREF1181_RS09045 at 411.483 kb on - strand, within HMPREF1181_RS09045 at 411.754 kb on - strand, within HMPREF1181_RS09045 at 411.770 kb on - strand, within HMPREF1181_RS09045 at 411.850 kb on - strand, within HMPREF1181_RS09045 at 411.875 kb on - strand, within HMPREF1181_RS09045 at 411.889 kb on - strand, within HMPREF1181_RS09045 at 411.889 kb on - strand, within HMPREF1181_RS09045 at 411.934 kb on - strand, within HMPREF1181_RS09045 at 412.075 kb on + strand, within HMPREF1181_RS09045 at 412.076 kb on - strand, within HMPREF1181_RS09045 at 412.120 kb on - strand at 412.123 kb on + strand at 412.174 kb on - strand at 412.219 kb on - strand at 412.240 kb on - strand at 412.318 kb on + strand at 412.326 kb on + strand at 412.470 kb on + strand, within HMPREF1181_RS09050 at 412.470 kb on + strand, within HMPREF1181_RS09050 at 412.595 kb on - strand, within HMPREF1181_RS09050 at 412.629 kb on - strand, within HMPREF1181_RS09050 at 412.660 kb on + strand, within HMPREF1181_RS09050 at 412.735 kb on - strand, within HMPREF1181_RS09050 at 412.948 kb on + strand, within HMPREF1181_RS09050 at 412.995 kb on + strand, within HMPREF1181_RS09050 at 413.022 kb on + strand, within HMPREF1181_RS09050 at 413.023 kb on - strand, within HMPREF1181_RS09050 at 413.023 kb on - strand, within HMPREF1181_RS09050 at 413.122 kb on + strand at 413.125 kb on + strand at 413.125 kb on + strand at 413.175 kb on + strand at 413.260 kb on + strand at 413.263 kb on + strand at 413.269 kb on + strand at 413.269 kb on + strand at 413.270 kb on - strand at 413.379 kb on - strand at 413.401 kb on - strand, within HMPREF1181_RS18090 at 413.401 kb on - strand, within HMPREF1181_RS18090 at 413.436 kb on - strand, within HMPREF1181_RS18090 at 413.457 kb on + strand, within HMPREF1181_RS18090 at 413.485 kb on - strand, within HMPREF1181_RS18090 at 413.494 kb on + strand, within HMPREF1181_RS18090 at 413.495 kb on - strand, within HMPREF1181_RS18090 at 413.496 kb on + strand, within HMPREF1181_RS18090 at 413.496 kb on + strand, within HMPREF1181_RS18090 at 413.502 kb on - strand, within HMPREF1181_RS18090 at 413.548 kb on - strand at 413.613 kb on + strand at 413.718 kb on + strand at 413.748 kb on - strand at 413.818 kb on + strand, within HMPREF1181_RS09055 at 413.818 kb on + strand, within HMPREF1181_RS09055 at 413.819 kb on - strand, within HMPREF1181_RS09055 at 413.819 kb on - strand, within HMPREF1181_RS09055 at 413.958 kb on - strand, within HMPREF1181_RS09055 at 413.966 kb on + strand, within HMPREF1181_RS09055 at 413.966 kb on + strand, within HMPREF1181_RS09055 at 413.971 kb on + strand, within HMPREF1181_RS09055 at 413.971 kb on + strand, within HMPREF1181_RS09055 at 413.999 kb on + strand, within HMPREF1181_RS09055 at 414.116 kb on - strand, within HMPREF1181_RS09055
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C) remove 411,337 + HMPREF1181_RS09045 0.38 +0.6 411,338 - HMPREF1181_RS09045 0.38 +0.1 411,338 - HMPREF1181_RS09045 0.38 +0.3 411,405 + HMPREF1181_RS09045 0.43 +0.1 411,483 - HMPREF1181_RS09045 0.48 +0.4 411,754 - HMPREF1181_RS09045 0.67 +0.3 411,770 - HMPREF1181_RS09045 0.68 -0.1 411,850 - HMPREF1181_RS09045 0.74 +0.2 411,875 - HMPREF1181_RS09045 0.76 +1.8 411,889 - HMPREF1181_RS09045 0.77 +0.1 411,889 - HMPREF1181_RS09045 0.77 -0.5 411,934 - HMPREF1181_RS09045 0.80 +0.5 412,075 + HMPREF1181_RS09045 0.90 +0.1 412,076 - HMPREF1181_RS09045 0.90 -0.4 412,120 - +0.5 412,123 + -0.6 412,174 - -0.2 412,219 - +0.2 412,240 - -0.1 412,318 + +0.1 412,326 + +0.2 412,470 + HMPREF1181_RS09050 0.18 -1.1 412,470 + HMPREF1181_RS09050 0.18 -0.6 412,595 - HMPREF1181_RS09050 0.32 -0.7 412,629 - HMPREF1181_RS09050 0.36 +0.5 412,660 + HMPREF1181_RS09050 0.39 -0.2 412,735 - HMPREF1181_RS09050 0.48 -1.1 412,948 + HMPREF1181_RS09050 0.73 -0.5 412,995 + HMPREF1181_RS09050 0.78 -0.5 413,022 + HMPREF1181_RS09050 0.81 -0.6 413,023 - HMPREF1181_RS09050 0.81 +0.4 413,023 - HMPREF1181_RS09050 0.81 +0.2 413,122 + -0.2 413,125 + -0.7 413,125 + +0.4 413,175 + -0.3 413,260 + -0.4 413,263 + -0.2 413,269 + -0.5 413,269 + -0.1 413,270 - +0.5 413,379 - -0.0 413,401 - HMPREF1181_RS18090 0.19 +0.4 413,401 - HMPREF1181_RS18090 0.19 -0.1 413,436 - HMPREF1181_RS18090 0.42 -0.0 413,457 + HMPREF1181_RS18090 0.55 -0.2 413,485 - HMPREF1181_RS18090 0.72 +0.1 413,494 + HMPREF1181_RS18090 0.78 +0.1 413,495 - HMPREF1181_RS18090 0.79 +0.0 413,496 + HMPREF1181_RS18090 0.79 +0.6 413,496 + HMPREF1181_RS18090 0.79 -1.3 413,502 - HMPREF1181_RS18090 0.83 +0.8 413,548 - +1.0 413,613 + -0.0 413,718 + -0.6 413,748 - -0.0 413,818 + HMPREF1181_RS09055 0.13 -0.7 413,818 + HMPREF1181_RS09055 0.13 -1.0 413,819 - HMPREF1181_RS09055 0.13 -0.7 413,819 - HMPREF1181_RS09055 0.13 +0.2 413,958 - HMPREF1181_RS09055 0.24 -0.4 413,966 + HMPREF1181_RS09055 0.25 +0.5 413,966 + HMPREF1181_RS09055 0.25 -1.2 413,971 + HMPREF1181_RS09055 0.26 +0.2 413,971 + HMPREF1181_RS09055 0.26 +0.0 413,999 + HMPREF1181_RS09055 0.28 -0.3 414,116 - HMPREF1181_RS09055 0.38 -0.7
Or see this region's nucleotide sequence