Experiment: Glycogen from bovine liver 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS03460 and HMPREF1181_RS03465 are separated by 93 nucleotides HMPREF1181_RS03465 and HMPREF1181_RS03470 are separated by 45 nucleotides HMPREF1181_RS03470 and HMPREF1181_RS03475 are separated by 431 nucleotides
HMPREF1181_RS03460: HMPREF1181_RS03460 - argininosuccinate synthase, at 875,362 to 876,570
_RS03460
HMPREF1181_RS03465: HMPREF1181_RS03465 - GNAT family N-acetyltransferase, at 876,664 to 877,221
_RS03465
HMPREF1181_RS03470: HMPREF1181_RS03470 - arginine repressor, at 877,267 to 877,740
_RS03470
HMPREF1181_RS03475: HMPREF1181_RS03475 - glycoside hydrolase family 88 protein, at 878,172 to 880,700
_RS03475
Position (kb) 876
877
878 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 875.762 kb on - strand, within HMPREF1181_RS03460 at 875.762 kb on - strand, within HMPREF1181_RS03460 at 875.795 kb on - strand, within HMPREF1181_RS03460 at 875.802 kb on + strand, within HMPREF1181_RS03460 at 876.028 kb on + strand, within HMPREF1181_RS03460 at 876.028 kb on + strand, within HMPREF1181_RS03460 at 876.028 kb on + strand, within HMPREF1181_RS03460 at 876.029 kb on - strand, within HMPREF1181_RS03460 at 876.029 kb on - strand, within HMPREF1181_RS03460 at 876.035 kb on + strand, within HMPREF1181_RS03460 at 876.092 kb on - strand, within HMPREF1181_RS03460 at 876.299 kb on + strand, within HMPREF1181_RS03460 at 876.303 kb on + strand, within HMPREF1181_RS03460 at 876.317 kb on - strand, within HMPREF1181_RS03460 at 876.335 kb on + strand, within HMPREF1181_RS03460 at 876.368 kb on - strand, within HMPREF1181_RS03460 at 876.381 kb on + strand, within HMPREF1181_RS03460 at 876.472 kb on + strand at 876.472 kb on + strand at 876.472 kb on + strand at 876.480 kb on - strand at 876.501 kb on - strand at 876.505 kb on - strand at 876.544 kb on + strand at 876.544 kb on + strand at 876.567 kb on + strand at 876.598 kb on - strand at 876.644 kb on - strand at 876.661 kb on + strand at 876.661 kb on + strand at 876.661 kb on + strand at 876.672 kb on + strand at 876.814 kb on - strand, within HMPREF1181_RS03465 at 876.877 kb on + strand, within HMPREF1181_RS03465 at 876.931 kb on - strand, within HMPREF1181_RS03465 at 876.967 kb on + strand, within HMPREF1181_RS03465 at 876.967 kb on + strand, within HMPREF1181_RS03465 at 876.993 kb on - strand, within HMPREF1181_RS03465 at 876.993 kb on - strand, within HMPREF1181_RS03465 at 877.015 kb on + strand, within HMPREF1181_RS03465 at 877.016 kb on - strand, within HMPREF1181_RS03465 at 877.019 kb on + strand, within HMPREF1181_RS03465 at 877.048 kb on + strand, within HMPREF1181_RS03465 at 877.049 kb on - strand, within HMPREF1181_RS03465 at 877.049 kb on - strand, within HMPREF1181_RS03465 at 877.054 kb on + strand, within HMPREF1181_RS03465 at 877.055 kb on - strand, within HMPREF1181_RS03465 at 877.055 kb on - strand, within HMPREF1181_RS03465 at 877.060 kb on - strand, within HMPREF1181_RS03465 at 877.081 kb on - strand, within HMPREF1181_RS03465 at 877.091 kb on + strand, within HMPREF1181_RS03465 at 877.228 kb on + strand at 877.229 kb on - strand at 877.238 kb on + strand at 877.241 kb on - strand at 877.253 kb on - strand at 877.278 kb on + strand at 877.279 kb on - strand at 877.302 kb on + strand at 877.406 kb on + strand, within HMPREF1181_RS03470 at 877.554 kb on - strand, within HMPREF1181_RS03470 at 877.554 kb on - strand, within HMPREF1181_RS03470 at 877.555 kb on + strand, within HMPREF1181_RS03470 at 877.555 kb on + strand, within HMPREF1181_RS03470 at 877.555 kb on + strand, within HMPREF1181_RS03470 at 877.559 kb on + strand, within HMPREF1181_RS03470 at 877.559 kb on + strand, within HMPREF1181_RS03470 at 877.560 kb on - strand, within HMPREF1181_RS03470 at 877.615 kb on + strand, within HMPREF1181_RS03470 at 877.616 kb on - strand, within HMPREF1181_RS03470 at 877.749 kb on - strand at 877.750 kb on + strand at 877.825 kb on + strand at 877.825 kb on + strand at 877.826 kb on - strand at 877.829 kb on - strand at 877.876 kb on + strand at 877.906 kb on - strand at 877.937 kb on - strand at 878.017 kb on + strand at 878.018 kb on - strand at 878.114 kb on - strand at 878.145 kb on + strand at 878.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C) remove 875,762 - HMPREF1181_RS03460 0.33 -3.5 875,762 - HMPREF1181_RS03460 0.33 -7.0 875,795 - HMPREF1181_RS03460 0.36 -6.1 875,802 + HMPREF1181_RS03460 0.36 -4.2 876,028 + HMPREF1181_RS03460 0.55 -1.4 876,028 + HMPREF1181_RS03460 0.55 -1.9 876,028 + HMPREF1181_RS03460 0.55 -4.4 876,029 - HMPREF1181_RS03460 0.55 -5.2 876,029 - HMPREF1181_RS03460 0.55 -1.9 876,035 + HMPREF1181_RS03460 0.56 -5.8 876,092 - HMPREF1181_RS03460 0.60 -5.4 876,299 + HMPREF1181_RS03460 0.78 -5.9 876,303 + HMPREF1181_RS03460 0.78 -2.1 876,317 - HMPREF1181_RS03460 0.79 -2.8 876,335 + HMPREF1181_RS03460 0.80 -2.8 876,368 - HMPREF1181_RS03460 0.83 -3.4 876,381 + HMPREF1181_RS03460 0.84 -5.9 876,472 + -3.5 876,472 + -1.4 876,472 + -6.8 876,480 - -6.2 876,501 - -5.0 876,505 - -4.5 876,544 + -2.3 876,544 + -4.4 876,567 + -5.8 876,598 - +0.6 876,644 - +0.1 876,661 + -5.4 876,661 + -4.6 876,661 + -3.8 876,672 + -2.8 876,814 - HMPREF1181_RS03465 0.27 -5.5 876,877 + HMPREF1181_RS03465 0.38 -3.3 876,931 - HMPREF1181_RS03465 0.48 -4.2 876,967 + HMPREF1181_RS03465 0.54 -3.9 876,967 + HMPREF1181_RS03465 0.54 -5.5 876,993 - HMPREF1181_RS03465 0.59 -3.8 876,993 - HMPREF1181_RS03465 0.59 -4.9 877,015 + HMPREF1181_RS03465 0.63 -2.6 877,016 - HMPREF1181_RS03465 0.63 -5.2 877,019 + HMPREF1181_RS03465 0.64 -4.7 877,048 + HMPREF1181_RS03465 0.69 -5.9 877,049 - HMPREF1181_RS03465 0.69 -3.4 877,049 - HMPREF1181_RS03465 0.69 -3.0 877,054 + HMPREF1181_RS03465 0.70 -3.7 877,055 - HMPREF1181_RS03465 0.70 -3.3 877,055 - HMPREF1181_RS03465 0.70 -3.8 877,060 - HMPREF1181_RS03465 0.71 -4.3 877,081 - HMPREF1181_RS03465 0.75 -1.9 877,091 + HMPREF1181_RS03465 0.77 -1.9 877,228 + -2.4 877,229 - -2.1 877,238 + -1.8 877,241 - -0.4 877,253 - +0.4 877,278 + -4.7 877,279 - +1.0 877,302 + -5.6 877,406 + HMPREF1181_RS03470 0.29 -2.7 877,554 - HMPREF1181_RS03470 0.61 +0.9 877,554 - HMPREF1181_RS03470 0.61 +0.7 877,555 + HMPREF1181_RS03470 0.61 -3.9 877,555 + HMPREF1181_RS03470 0.61 -3.1 877,555 + HMPREF1181_RS03470 0.61 -6.3 877,559 + HMPREF1181_RS03470 0.62 -1.6 877,559 + HMPREF1181_RS03470 0.62 -2.4 877,560 - HMPREF1181_RS03470 0.62 +0.8 877,615 + HMPREF1181_RS03470 0.73 -4.8 877,616 - HMPREF1181_RS03470 0.74 +1.1 877,749 - +1.3 877,750 + -2.8 877,825 + +0.4 877,825 + -0.7 877,826 - +0.1 877,829 - +0.7 877,876 + +0.0 877,906 - +0.2 877,937 - -0.2 878,017 + +0.2 878,018 - +0.5 878,114 - +0.3 878,145 + -0.5 878,151 + +1.6
Or see this region's nucleotide sequence