Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS01515

Experiment: Glycogen from bovine liver 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS01510 and HMPREF1181_RS01515 overlap by 8 nucleotidesHMPREF1181_RS01515 and HMPREF1181_RS01520 are separated by 37 nucleotides HMPREF1181_RS01510: HMPREF1181_RS01510 - DNA-protecting protein DprA, at 366,534 to 367,652 _RS01510 HMPREF1181_RS01515: HMPREF1181_RS01515 - acyl-CoA thioesterase, at 367,645 to 368,052 _RS01515 HMPREF1181_RS01520: HMPREF1181_RS01520 - U32 family peptidase, at 368,090 to 369,382 _RS01520 Position (kb) 367 368 369Strain fitness (log2 ratio) -1 0 1at 366.682 kb on - strand, within HMPREF1181_RS01510at 366.684 kb on - strand, within HMPREF1181_RS01510at 366.684 kb on - strand, within HMPREF1181_RS01510at 367.011 kb on - strand, within HMPREF1181_RS01510at 367.011 kb on - strand, within HMPREF1181_RS01510at 367.026 kb on - strand, within HMPREF1181_RS01510at 367.085 kb on + strand, within HMPREF1181_RS01510at 367.085 kb on + strand, within HMPREF1181_RS01510at 367.103 kb on - strand, within HMPREF1181_RS01510at 367.106 kb on + strand, within HMPREF1181_RS01510at 367.107 kb on - strand, within HMPREF1181_RS01510at 367.146 kb on - strand, within HMPREF1181_RS01510at 367.146 kb on - strand, within HMPREF1181_RS01510at 367.146 kb on - strand, within HMPREF1181_RS01510at 367.146 kb on - strand, within HMPREF1181_RS01510at 367.206 kb on + strand, within HMPREF1181_RS01510at 367.298 kb on + strand, within HMPREF1181_RS01510at 367.299 kb on - strand, within HMPREF1181_RS01510at 367.299 kb on - strand, within HMPREF1181_RS01510at 367.407 kb on - strand, within HMPREF1181_RS01510at 367.407 kb on - strand, within HMPREF1181_RS01510at 367.487 kb on + strand, within HMPREF1181_RS01510at 367.533 kb on - strand, within HMPREF1181_RS01510at 367.573 kb on - strandat 367.617 kb on - strandat 367.721 kb on - strand, within HMPREF1181_RS01515at 367.752 kb on + strand, within HMPREF1181_RS01515at 367.782 kb on - strand, within HMPREF1181_RS01515at 367.782 kb on - strand, within HMPREF1181_RS01515at 367.790 kb on + strand, within HMPREF1181_RS01515at 367.790 kb on + strand, within HMPREF1181_RS01515at 367.790 kb on + strand, within HMPREF1181_RS01515at 367.791 kb on - strand, within HMPREF1181_RS01515at 367.866 kb on + strand, within HMPREF1181_RS01515at 367.867 kb on - strand, within HMPREF1181_RS01515at 367.953 kb on + strand, within HMPREF1181_RS01515at 368.040 kb on - strandat 368.046 kb on - strandat 368.053 kb on + strandat 368.058 kb on + strandat 368.092 kb on - strandat 368.177 kb on + strandat 368.177 kb on + strandat 368.177 kb on + strandat 368.178 kb on - strandat 368.260 kb on + strand, within HMPREF1181_RS01520at 368.365 kb on - strand, within HMPREF1181_RS01520at 368.415 kb on + strand, within HMPREF1181_RS01520at 368.510 kb on + strand, within HMPREF1181_RS01520at 368.511 kb on - strand, within HMPREF1181_RS01520at 368.525 kb on - strand, within HMPREF1181_RS01520at 368.561 kb on - strand, within HMPREF1181_RS01520at 368.561 kb on - strand, within HMPREF1181_RS01520at 368.578 kb on + strand, within HMPREF1181_RS01520at 368.686 kb on + strand, within HMPREF1181_RS01520at 368.686 kb on + strand, within HMPREF1181_RS01520at 368.687 kb on - strand, within HMPREF1181_RS01520at 368.691 kb on + strand, within HMPREF1181_RS01520at 368.691 kb on + strand, within HMPREF1181_RS01520at 368.702 kb on + strand, within HMPREF1181_RS01520at 368.765 kb on - strand, within HMPREF1181_RS01520at 368.863 kb on + strand, within HMPREF1181_RS01520at 368.863 kb on + strand, within HMPREF1181_RS01520at 368.867 kb on + strand, within HMPREF1181_RS01520at 368.867 kb on + strand, within HMPREF1181_RS01520at 368.982 kb on + strand, within HMPREF1181_RS01520

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C)
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366,682 - HMPREF1181_RS01510 0.13 -0.1
366,684 - HMPREF1181_RS01510 0.13 -0.1
366,684 - HMPREF1181_RS01510 0.13 +0.1
367,011 - HMPREF1181_RS01510 0.43 -0.3
367,011 - HMPREF1181_RS01510 0.43 -0.1
367,026 - HMPREF1181_RS01510 0.44 -0.5
367,085 + HMPREF1181_RS01510 0.49 +0.2
367,085 + HMPREF1181_RS01510 0.49 +0.8
367,103 - HMPREF1181_RS01510 0.51 -0.4
367,106 + HMPREF1181_RS01510 0.51 -1.7
367,107 - HMPREF1181_RS01510 0.51 -0.1
367,146 - HMPREF1181_RS01510 0.55 -0.1
367,146 - HMPREF1181_RS01510 0.55 -0.3
367,146 - HMPREF1181_RS01510 0.55 -1.0
367,146 - HMPREF1181_RS01510 0.55 +0.1
367,206 + HMPREF1181_RS01510 0.60 +0.7
367,298 + HMPREF1181_RS01510 0.68 -0.4
367,299 - HMPREF1181_RS01510 0.68 +0.3
367,299 - HMPREF1181_RS01510 0.68 -0.2
367,407 - HMPREF1181_RS01510 0.78 -1.1
367,407 - HMPREF1181_RS01510 0.78 +0.2
367,487 + HMPREF1181_RS01510 0.85 +1.1
367,533 - HMPREF1181_RS01510 0.89 -0.3
367,573 - +0.4
367,617 - -0.3
367,721 - HMPREF1181_RS01515 0.19 -0.5
367,752 + HMPREF1181_RS01515 0.26 -0.9
367,782 - HMPREF1181_RS01515 0.34 -0.3
367,782 - HMPREF1181_RS01515 0.34 +0.6
367,790 + HMPREF1181_RS01515 0.36 -1.6
367,790 + HMPREF1181_RS01515 0.36 -0.6
367,790 + HMPREF1181_RS01515 0.36 -0.5
367,791 - HMPREF1181_RS01515 0.36 +0.6
367,866 + HMPREF1181_RS01515 0.54 -0.5
367,867 - HMPREF1181_RS01515 0.54 -0.5
367,953 + HMPREF1181_RS01515 0.75 -0.8
368,040 - -1.2
368,046 - -0.1
368,053 + -0.2
368,058 + -0.5
368,092 - -0.4
368,177 + -0.5
368,177 + +0.6
368,177 + -0.7
368,178 - -0.1
368,260 + HMPREF1181_RS01520 0.13 -1.1
368,365 - HMPREF1181_RS01520 0.21 -0.8
368,415 + HMPREF1181_RS01520 0.25 -0.1
368,510 + HMPREF1181_RS01520 0.32 -1.6
368,511 - HMPREF1181_RS01520 0.33 -1.1
368,525 - HMPREF1181_RS01520 0.34 +0.7
368,561 - HMPREF1181_RS01520 0.36 +0.7
368,561 - HMPREF1181_RS01520 0.36 -0.4
368,578 + HMPREF1181_RS01520 0.38 -0.5
368,686 + HMPREF1181_RS01520 0.46 -1.0
368,686 + HMPREF1181_RS01520 0.46 -0.4
368,687 - HMPREF1181_RS01520 0.46 -0.7
368,691 + HMPREF1181_RS01520 0.46 -1.4
368,691 + HMPREF1181_RS01520 0.46 -0.5
368,702 + HMPREF1181_RS01520 0.47 +0.3
368,765 - HMPREF1181_RS01520 0.52 -0.8
368,863 + HMPREF1181_RS01520 0.60 -1.3
368,863 + HMPREF1181_RS01520 0.60 -0.3
368,867 + HMPREF1181_RS01520 0.60 -1.6
368,867 + HMPREF1181_RS01520 0.60 -1.1
368,982 + HMPREF1181_RS01520 0.69 -0.7

Or see this region's nucleotide sequence