Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01885

Experiment: HSDP5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01881 and OHPLBJKB_01882 are separated by 66 nucleotidesOHPLBJKB_01882 and OHPLBJKB_01883 overlap by 87 nucleotidesOHPLBJKB_01883 and OHPLBJKB_01884 are separated by 36 nucleotidesOHPLBJKB_01884 and OHPLBJKB_01885 are separated by 59 nucleotidesOHPLBJKB_01885 and OHPLBJKB_01886 are separated by 208 nucleotides OHPLBJKB_01881: OHPLBJKB_01881 - hypothetical protein, at 1,960,902 to 1,961,192 _01881 OHPLBJKB_01882: OHPLBJKB_01882 - Protein YebF, at 1,961,259 to 1,961,615 _01882 OHPLBJKB_01883: OHPLBJKB_01883 - hypothetical protein, at 1,961,529 to 1,961,735 _01883 OHPLBJKB_01884: OHPLBJKB_01884 - hypothetical protein, at 1,961,772 to 1,961,882 _01884 OHPLBJKB_01885: OHPLBJKB_01885 - Inner membrane protein YebE, at 1,961,942 to 1,962,601 _01885 OHPLBJKB_01886: OHPLBJKB_01886 - Protease 2, at 1,962,810 to 1,964,870 _01886 Position (kb) 1961 1962 1963Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1960.984 kb on - strand, within OHPLBJKB_01881at 1960.984 kb on - strand, within OHPLBJKB_01881at 1961.131 kb on + strand, within OHPLBJKB_01881at 1961.131 kb on + strand, within OHPLBJKB_01881at 1961.218 kb on + strandat 1961.219 kb on - strandat 1961.513 kb on + strand, within OHPLBJKB_01882at 1961.513 kb on + strand, within OHPLBJKB_01882at 1961.514 kb on - strand, within OHPLBJKB_01882at 1961.543 kb on + strandat 1961.556 kb on - strandat 1961.602 kb on - strandat 1961.763 kb on + strandat 1961.763 kb on + strandat 1961.763 kb on + strandat 1961.796 kb on + strand, within OHPLBJKB_01884at 1961.796 kb on + strand, within OHPLBJKB_01884at 1961.796 kb on + strand, within OHPLBJKB_01884at 1961.796 kb on + strand, within OHPLBJKB_01884at 1961.797 kb on - strand, within OHPLBJKB_01884at 1961.797 kb on - strand, within OHPLBJKB_01884at 1961.797 kb on - strand, within OHPLBJKB_01884at 1961.797 kb on - strand, within OHPLBJKB_01884at 1961.802 kb on - strand, within OHPLBJKB_01884at 1961.802 kb on - strand, within OHPLBJKB_01884at 1961.802 kb on - strand, within OHPLBJKB_01884at 1961.802 kb on - strand, within OHPLBJKB_01884at 1961.805 kb on + strand, within OHPLBJKB_01884at 1961.805 kb on + strand, within OHPLBJKB_01884at 1961.853 kb on + strand, within OHPLBJKB_01884at 1961.878 kb on + strandat 1961.878 kb on + strandat 1961.878 kb on + strandat 1961.879 kb on - strandat 1961.879 kb on - strandat 1961.908 kb on + strandat 1961.908 kb on + strandat 1961.909 kb on - strandat 1961.909 kb on - strandat 1961.918 kb on - strandat 1961.941 kb on + strandat 1961.941 kb on + strandat 1961.942 kb on - strandat 1962.049 kb on - strand, within OHPLBJKB_01885at 1962.092 kb on - strand, within OHPLBJKB_01885at 1962.107 kb on + strand, within OHPLBJKB_01885at 1962.170 kb on + strand, within OHPLBJKB_01885at 1962.170 kb on + strand, within OHPLBJKB_01885at 1962.170 kb on + strand, within OHPLBJKB_01885at 1962.171 kb on - strand, within OHPLBJKB_01885at 1962.179 kb on - strand, within OHPLBJKB_01885at 1962.179 kb on - strand, within OHPLBJKB_01885at 1962.245 kb on - strand, within OHPLBJKB_01885at 1962.295 kb on + strand, within OHPLBJKB_01885at 1962.367 kb on - strand, within OHPLBJKB_01885at 1962.631 kb on + strandat 1962.631 kb on + strandat 1962.691 kb on - strandat 1962.712 kb on + strandat 1962.713 kb on - strandat 1962.713 kb on - strandat 1962.726 kb on + strandat 1962.727 kb on - strandat 1962.727 kb on - strandat 1962.727 kb on - strandat 1962.778 kb on + strandat 1962.779 kb on - strandat 1962.780 kb on + strandat 1962.780 kb on + strandat 1962.780 kb on + strandat 1962.781 kb on - strandat 1962.781 kb on - strandat 1962.781 kb on - strandat 1962.781 kb on - strandat 1962.807 kb on - strandat 1962.876 kb on + strandat 1962.877 kb on - strandat 1962.880 kb on - strandat 1962.941 kb on + strandat 1962.941 kb on + strandat 1962.941 kb on + strandat 1962.941 kb on + strandat 1962.942 kb on - strandat 1962.994 kb on + strandat 1963.041 kb on + strand, within OHPLBJKB_01886at 1963.042 kb on - strand, within OHPLBJKB_01886at 1963.075 kb on - strand, within OHPLBJKB_01886at 1963.075 kb on - strand, within OHPLBJKB_01886at 1963.092 kb on + strand, within OHPLBJKB_01886at 1963.093 kb on - strand, within OHPLBJKB_01886at 1963.093 kb on - strand, within OHPLBJKB_01886at 1963.098 kb on - strand, within OHPLBJKB_01886at 1963.101 kb on + strand, within OHPLBJKB_01886at 1963.101 kb on + strand, within OHPLBJKB_01886at 1963.102 kb on - strand, within OHPLBJKB_01886at 1963.102 kb on - strand, within OHPLBJKB_01886at 1963.102 kb on - strand, within OHPLBJKB_01886at 1963.147 kb on + strand, within OHPLBJKB_01886at 1963.230 kb on - strand, within OHPLBJKB_01886at 1963.299 kb on - strand, within OHPLBJKB_01886at 1963.368 kb on + strand, within OHPLBJKB_01886at 1963.369 kb on - strand, within OHPLBJKB_01886at 1963.371 kb on + strand, within OHPLBJKB_01886at 1963.371 kb on + strand, within OHPLBJKB_01886at 1963.372 kb on - strand, within OHPLBJKB_01886at 1963.372 kb on - strand, within OHPLBJKB_01886at 1963.458 kb on + strand, within OHPLBJKB_01886at 1963.459 kb on - strand, within OHPLBJKB_01886at 1963.479 kb on + strand, within OHPLBJKB_01886at 1963.479 kb on + strand, within OHPLBJKB_01886at 1963.479 kb on + strand, within OHPLBJKB_01886at 1963.479 kb on + strand, within OHPLBJKB_01886at 1963.479 kb on + strand, within OHPLBJKB_01886at 1963.479 kb on + strand, within OHPLBJKB_01886at 1963.480 kb on - strand, within OHPLBJKB_01886at 1963.480 kb on - strand, within OHPLBJKB_01886at 1963.480 kb on - strand, within OHPLBJKB_01886at 1963.480 kb on - strand, within OHPLBJKB_01886at 1963.482 kb on + strand, within OHPLBJKB_01886at 1963.482 kb on + strand, within OHPLBJKB_01886at 1963.483 kb on - strand, within OHPLBJKB_01886at 1963.496 kb on + strand, within OHPLBJKB_01886at 1963.515 kb on + strand, within OHPLBJKB_01886at 1963.515 kb on + strand, within OHPLBJKB_01886at 1963.516 kb on - strand, within OHPLBJKB_01886at 1963.519 kb on + strand, within OHPLBJKB_01886at 1963.519 kb on + strand, within OHPLBJKB_01886at 1963.519 kb on + strand, within OHPLBJKB_01886at 1963.519 kb on + strand, within OHPLBJKB_01886at 1963.519 kb on + strand, within OHPLBJKB_01886at 1963.519 kb on + strand, within OHPLBJKB_01886at 1963.519 kb on + strand, within OHPLBJKB_01886at 1963.520 kb on - strand, within OHPLBJKB_01886at 1963.520 kb on - strand, within OHPLBJKB_01886at 1963.520 kb on - strand, within OHPLBJKB_01886at 1963.520 kb on - strand, within OHPLBJKB_01886at 1963.520 kb on - strand, within OHPLBJKB_01886

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP5
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1,960,984 - OHPLBJKB_01881 0.28 +1.1
1,960,984 - OHPLBJKB_01881 0.28 +0.7
1,961,131 + OHPLBJKB_01881 0.79 -0.3
1,961,131 + OHPLBJKB_01881 0.79 +0.5
1,961,218 + -0.3
1,961,219 - -1.0
1,961,513 + OHPLBJKB_01882 0.71 -1.4
1,961,513 + OHPLBJKB_01882 0.71 +0.6
1,961,514 - OHPLBJKB_01882 0.71 +0.2
1,961,543 + +0.2
1,961,556 - -0.1
1,961,602 - +0.3
1,961,763 + +0.3
1,961,763 + -1.4
1,961,763 + +1.9
1,961,796 + OHPLBJKB_01884 0.22 +1.9
1,961,796 + OHPLBJKB_01884 0.22 +0.9
1,961,796 + OHPLBJKB_01884 0.22 -0.4
1,961,796 + OHPLBJKB_01884 0.22 +0.2
1,961,797 - OHPLBJKB_01884 0.23 -1.2
1,961,797 - OHPLBJKB_01884 0.23 -0.5
1,961,797 - OHPLBJKB_01884 0.23 -2.0
1,961,797 - OHPLBJKB_01884 0.23 -0.5
1,961,802 - OHPLBJKB_01884 0.27 +0.3
1,961,802 - OHPLBJKB_01884 0.27 +1.2
1,961,802 - OHPLBJKB_01884 0.27 -0.5
1,961,802 - OHPLBJKB_01884 0.27 +1.5
1,961,805 + OHPLBJKB_01884 0.30 -0.3
1,961,805 + OHPLBJKB_01884 0.30 -0.5
1,961,853 + OHPLBJKB_01884 0.73 +0.9
1,961,878 + +0.7
1,961,878 + +0.5
1,961,878 + +2.5
1,961,879 - -0.1
1,961,879 - -0.2
1,961,908 + -0.3
1,961,908 + -0.3
1,961,909 - +0.0
1,961,909 - +0.4
1,961,918 - -0.1
1,961,941 + -0.9
1,961,941 + -0.3
1,961,942 - +1.1
1,962,049 - OHPLBJKB_01885 0.16 -1.1
1,962,092 - OHPLBJKB_01885 0.23 -0.2
1,962,107 + OHPLBJKB_01885 0.25 -1.1
1,962,170 + OHPLBJKB_01885 0.35 -0.3
1,962,170 + OHPLBJKB_01885 0.35 -0.5
1,962,170 + OHPLBJKB_01885 0.35 -0.3
1,962,171 - OHPLBJKB_01885 0.35 +3.5
1,962,179 - OHPLBJKB_01885 0.36 +0.5
1,962,179 - OHPLBJKB_01885 0.36 -0.1
1,962,245 - OHPLBJKB_01885 0.46 -0.1
1,962,295 + OHPLBJKB_01885 0.53 +1.8
1,962,367 - OHPLBJKB_01885 0.64 +0.0
1,962,631 + -0.1
1,962,631 + -0.7
1,962,691 - -0.2
1,962,712 + +0.8
1,962,713 - +1.5
1,962,713 - -0.2
1,962,726 + +0.2
1,962,727 - +1.7
1,962,727 - +0.2
1,962,727 - -1.8
1,962,778 + -0.7
1,962,779 - +1.0
1,962,780 + -0.2
1,962,780 + +0.2
1,962,780 + +0.2
1,962,781 - -1.3
1,962,781 - +0.8
1,962,781 - +0.7
1,962,781 - -0.3
1,962,807 - +1.3
1,962,876 + -0.3
1,962,877 - +2.2
1,962,880 - +0.9
1,962,941 + +0.7
1,962,941 + -0.3
1,962,941 + +0.4
1,962,941 + +0.9
1,962,942 - +0.2
1,962,994 + +0.2
1,963,041 + OHPLBJKB_01886 0.11 +0.6
1,963,042 - OHPLBJKB_01886 0.11 -1.6
1,963,075 - OHPLBJKB_01886 0.13 +0.9
1,963,075 - OHPLBJKB_01886 0.13 -0.0
1,963,092 + OHPLBJKB_01886 0.14 +0.6
1,963,093 - OHPLBJKB_01886 0.14 +0.3
1,963,093 - OHPLBJKB_01886 0.14 -1.5
1,963,098 - OHPLBJKB_01886 0.14 -0.3
1,963,101 + OHPLBJKB_01886 0.14 +0.5
1,963,101 + OHPLBJKB_01886 0.14 -0.8
1,963,102 - OHPLBJKB_01886 0.14 +0.3
1,963,102 - OHPLBJKB_01886 0.14 +0.0
1,963,102 - OHPLBJKB_01886 0.14 -1.0
1,963,147 + OHPLBJKB_01886 0.16 -0.3
1,963,230 - OHPLBJKB_01886 0.20 -1.3
1,963,299 - OHPLBJKB_01886 0.24 +1.5
1,963,368 + OHPLBJKB_01886 0.27 +1.1
1,963,369 - OHPLBJKB_01886 0.27 +0.9
1,963,371 + OHPLBJKB_01886 0.27 +0.4
1,963,371 + OHPLBJKB_01886 0.27 -1.2
1,963,372 - OHPLBJKB_01886 0.27 -0.7
1,963,372 - OHPLBJKB_01886 0.27 +0.5
1,963,458 + OHPLBJKB_01886 0.31 +0.5
1,963,459 - OHPLBJKB_01886 0.31 -0.5
1,963,479 + OHPLBJKB_01886 0.32 +0.9
1,963,479 + OHPLBJKB_01886 0.32 +2.0
1,963,479 + OHPLBJKB_01886 0.32 -0.3
1,963,479 + OHPLBJKB_01886 0.32 +0.6
1,963,479 + OHPLBJKB_01886 0.32 -1.1
1,963,479 + OHPLBJKB_01886 0.32 -1.3
1,963,480 - OHPLBJKB_01886 0.33 -0.8
1,963,480 - OHPLBJKB_01886 0.33 +0.1
1,963,480 - OHPLBJKB_01886 0.33 +0.9
1,963,480 - OHPLBJKB_01886 0.33 -0.4
1,963,482 + OHPLBJKB_01886 0.33 +0.9
1,963,482 + OHPLBJKB_01886 0.33 +2.3
1,963,483 - OHPLBJKB_01886 0.33 -2.3
1,963,496 + OHPLBJKB_01886 0.33 +0.8
1,963,515 + OHPLBJKB_01886 0.34 -0.0
1,963,515 + OHPLBJKB_01886 0.34 -0.6
1,963,516 - OHPLBJKB_01886 0.34 -0.9
1,963,519 + OHPLBJKB_01886 0.34 -0.3
1,963,519 + OHPLBJKB_01886 0.34 +0.0
1,963,519 + OHPLBJKB_01886 0.34 -0.7
1,963,519 + OHPLBJKB_01886 0.34 -0.8
1,963,519 + OHPLBJKB_01886 0.34 +2.0
1,963,519 + OHPLBJKB_01886 0.34 +0.2
1,963,519 + OHPLBJKB_01886 0.34 +1.7
1,963,520 - OHPLBJKB_01886 0.34 +0.1
1,963,520 - OHPLBJKB_01886 0.34 +1.3
1,963,520 - OHPLBJKB_01886 0.34 +0.5
1,963,520 - OHPLBJKB_01886 0.34 -0.3
1,963,520 - OHPLBJKB_01886 0.34 -0.5

Or see this region's nucleotide sequence