Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00719

Experiment: HSDP5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00717 and OHPLBJKB_00718 are separated by 11 nucleotidesOHPLBJKB_00718 and OHPLBJKB_00719 are separated by 30 nucleotidesOHPLBJKB_00719 and OHPLBJKB_00720 overlap by 4 nucleotides OHPLBJKB_00717: OHPLBJKB_00717 - hypothetical protein, at 735,012 to 735,836 _00717 OHPLBJKB_00718: OHPLBJKB_00718 - putative protein YtfJ, at 735,848 to 736,408 _00718 OHPLBJKB_00719: OHPLBJKB_00719 - hypothetical protein, at 736,439 to 737,509 _00719 OHPLBJKB_00720: OHPLBJKB_00720 - Lipopolysaccharide export system permease protein LptG, at 737,506 to 738,585 _00720 Position (kb) 736 737 738Strain fitness (log2 ratio) -2 -1 0 1 2at 735.439 kb on - strand, within OHPLBJKB_00717at 735.443 kb on - strand, within OHPLBJKB_00717at 735.471 kb on + strand, within OHPLBJKB_00717at 735.472 kb on - strand, within OHPLBJKB_00717at 735.472 kb on - strand, within OHPLBJKB_00717at 735.502 kb on + strand, within OHPLBJKB_00717at 735.503 kb on - strand, within OHPLBJKB_00717at 735.553 kb on + strand, within OHPLBJKB_00717at 735.572 kb on - strand, within OHPLBJKB_00717at 735.633 kb on - strand, within OHPLBJKB_00717at 735.638 kb on - strand, within OHPLBJKB_00717at 735.638 kb on - strand, within OHPLBJKB_00717at 735.659 kb on + strand, within OHPLBJKB_00717at 735.762 kb on + strandat 735.762 kb on + strandat 735.762 kb on + strandat 735.762 kb on + strandat 735.763 kb on - strandat 735.806 kb on - strandat 735.833 kb on - strandat 735.878 kb on - strandat 735.944 kb on + strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.946 kb on + strand, within OHPLBJKB_00718at 735.947 kb on - strand, within OHPLBJKB_00718at 736.060 kb on + strand, within OHPLBJKB_00718at 736.093 kb on + strand, within OHPLBJKB_00718at 736.094 kb on - strand, within OHPLBJKB_00718at 736.094 kb on - strand, within OHPLBJKB_00718at 736.094 kb on - strand, within OHPLBJKB_00718at 736.181 kb on + strand, within OHPLBJKB_00718at 736.181 kb on + strand, within OHPLBJKB_00718at 736.181 kb on + strand, within OHPLBJKB_00718at 736.182 kb on - strand, within OHPLBJKB_00718at 736.182 kb on - strand, within OHPLBJKB_00718at 736.365 kb on + strandat 736.365 kb on + strandat 736.365 kb on + strandat 736.366 kb on - strandat 736.366 kb on - strandat 736.366 kb on - strandat 736.366 kb on - strandat 736.457 kb on + strandat 736.457 kb on + strandat 736.458 kb on - strandat 736.458 kb on - strandat 736.527 kb on - strandat 736.569 kb on + strand, within OHPLBJKB_00719at 736.569 kb on + strand, within OHPLBJKB_00719at 736.569 kb on + strand, within OHPLBJKB_00719at 736.569 kb on + strand, within OHPLBJKB_00719at 736.570 kb on - strand, within OHPLBJKB_00719at 736.570 kb on - strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.647 kb on - strand, within OHPLBJKB_00719at 736.647 kb on - strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.680 kb on - strand, within OHPLBJKB_00719at 736.680 kb on - strand, within OHPLBJKB_00719at 736.680 kb on - strand, within OHPLBJKB_00719at 736.737 kb on - strand, within OHPLBJKB_00719at 736.737 kb on - strand, within OHPLBJKB_00719at 736.768 kb on - strand, within OHPLBJKB_00719at 736.772 kb on - strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.815 kb on - strand, within OHPLBJKB_00719at 736.826 kb on + strand, within OHPLBJKB_00719at 736.826 kb on + strand, within OHPLBJKB_00719at 736.826 kb on + strand, within OHPLBJKB_00719at 736.827 kb on - strand, within OHPLBJKB_00719at 736.888 kb on + strand, within OHPLBJKB_00719at 736.894 kb on + strand, within OHPLBJKB_00719at 736.895 kb on - strand, within OHPLBJKB_00719at 736.942 kb on + strand, within OHPLBJKB_00719at 736.942 kb on + strand, within OHPLBJKB_00719at 736.943 kb on - strand, within OHPLBJKB_00719at 736.967 kb on + strand, within OHPLBJKB_00719at 736.975 kb on + strand, within OHPLBJKB_00719at 736.975 kb on + strand, within OHPLBJKB_00719at 736.976 kb on - strand, within OHPLBJKB_00719at 736.976 kb on - strand, within OHPLBJKB_00719at 737.050 kb on + strand, within OHPLBJKB_00719at 737.050 kb on + strand, within OHPLBJKB_00719at 737.051 kb on - strand, within OHPLBJKB_00719at 737.051 kb on - strand, within OHPLBJKB_00719at 737.051 kb on - strand, within OHPLBJKB_00719at 737.114 kb on + strand, within OHPLBJKB_00719at 737.114 kb on + strand, within OHPLBJKB_00719at 737.130 kb on + strand, within OHPLBJKB_00719at 737.130 kb on + strand, within OHPLBJKB_00719at 737.130 kb on + strand, within OHPLBJKB_00719at 737.131 kb on - strand, within OHPLBJKB_00719at 737.131 kb on - strand, within OHPLBJKB_00719at 737.131 kb on - strand, within OHPLBJKB_00719at 737.131 kb on - strand, within OHPLBJKB_00719at 737.328 kb on + strand, within OHPLBJKB_00719at 737.448 kb on + strandat 737.525 kb on - strandat 737.525 kb on - strandat 737.528 kb on + strandat 737.528 kb on + strandat 737.529 kb on - strandat 737.949 kb on + strand, within OHPLBJKB_00720at 737.949 kb on + strand, within OHPLBJKB_00720at 737.950 kb on - strand, within OHPLBJKB_00720at 738.064 kb on + strand, within OHPLBJKB_00720at 738.070 kb on + strand, within OHPLBJKB_00720at 738.070 kb on + strand, within OHPLBJKB_00720at 738.070 kb on + strand, within OHPLBJKB_00720at 738.070 kb on + strand, within OHPLBJKB_00720at 738.071 kb on - strand, within OHPLBJKB_00720at 738.071 kb on - strand, within OHPLBJKB_00720at 738.071 kb on - strand, within OHPLBJKB_00720at 738.071 kb on - strand, within OHPLBJKB_00720at 738.091 kb on - strand, within OHPLBJKB_00720at 738.171 kb on + strand, within OHPLBJKB_00720at 738.172 kb on - strand, within OHPLBJKB_00720at 738.218 kb on + strand, within OHPLBJKB_00720at 738.234 kb on + strand, within OHPLBJKB_00720at 738.234 kb on + strand, within OHPLBJKB_00720at 738.256 kb on - strand, within OHPLBJKB_00720at 738.262 kb on + strand, within OHPLBJKB_00720at 738.262 kb on + strand, within OHPLBJKB_00720at 738.262 kb on + strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.271 kb on + strand, within OHPLBJKB_00720at 738.272 kb on - strand, within OHPLBJKB_00720at 738.444 kb on - strand, within OHPLBJKB_00720at 738.488 kb on + strandat 738.488 kb on + strandat 738.489 kb on - strandat 738.489 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction HSDP5
remove
735,439 - OHPLBJKB_00717 0.52 -1.7
735,443 - OHPLBJKB_00717 0.52 +1.0
735,471 + OHPLBJKB_00717 0.56 +0.8
735,472 - OHPLBJKB_00717 0.56 -0.4
735,472 - OHPLBJKB_00717 0.56 -0.6
735,502 + OHPLBJKB_00717 0.59 -0.1
735,503 - OHPLBJKB_00717 0.60 +0.2
735,553 + OHPLBJKB_00717 0.66 -0.7
735,572 - OHPLBJKB_00717 0.68 +0.2
735,633 - OHPLBJKB_00717 0.75 +1.1
735,638 - OHPLBJKB_00717 0.76 +1.0
735,638 - OHPLBJKB_00717 0.76 -0.2
735,659 + OHPLBJKB_00717 0.78 -0.4
735,762 + -1.6
735,762 + -0.4
735,762 + +0.8
735,762 + -0.1
735,763 - -0.4
735,806 - +0.2
735,833 - -0.2
735,878 - +0.5
735,944 + OHPLBJKB_00718 0.17 -0.6
735,945 - OHPLBJKB_00718 0.17 -1.0
735,945 - OHPLBJKB_00718 0.17 +0.3
735,945 - OHPLBJKB_00718 0.17 -2.0
735,945 - OHPLBJKB_00718 0.17 -0.1
735,945 - OHPLBJKB_00718 0.17 -0.0
735,946 + OHPLBJKB_00718 0.17 -0.4
735,947 - OHPLBJKB_00718 0.18 +0.6
736,060 + OHPLBJKB_00718 0.38 +0.4
736,093 + OHPLBJKB_00718 0.44 +0.5
736,094 - OHPLBJKB_00718 0.44 +0.6
736,094 - OHPLBJKB_00718 0.44 +0.5
736,094 - OHPLBJKB_00718 0.44 +0.1
736,181 + OHPLBJKB_00718 0.59 -0.3
736,181 + OHPLBJKB_00718 0.59 +0.4
736,181 + OHPLBJKB_00718 0.59 -0.3
736,182 - OHPLBJKB_00718 0.60 -0.1
736,182 - OHPLBJKB_00718 0.60 +1.7
736,365 + +1.5
736,365 + +0.4
736,365 + +0.4
736,366 - -0.1
736,366 - +0.1
736,366 - +0.5
736,366 - +1.1
736,457 + +0.6
736,457 + +0.7
736,458 - +0.2
736,458 - +1.1
736,527 - +0.3
736,569 + OHPLBJKB_00719 0.12 -0.6
736,569 + OHPLBJKB_00719 0.12 +0.4
736,569 + OHPLBJKB_00719 0.12 +0.0
736,569 + OHPLBJKB_00719 0.12 -1.8
736,570 - OHPLBJKB_00719 0.12 +0.7
736,570 - OHPLBJKB_00719 0.12 -1.1
736,646 + OHPLBJKB_00719 0.19 +0.2
736,646 + OHPLBJKB_00719 0.19 -0.3
736,646 + OHPLBJKB_00719 0.19 +0.1
736,646 + OHPLBJKB_00719 0.19 +0.4
736,646 + OHPLBJKB_00719 0.19 -0.3
736,646 + OHPLBJKB_00719 0.19 -0.2
736,646 + OHPLBJKB_00719 0.19 -0.3
736,646 + OHPLBJKB_00719 0.19 +0.5
736,647 - OHPLBJKB_00719 0.19 -0.8
736,647 - OHPLBJKB_00719 0.19 +0.0
736,679 + OHPLBJKB_00719 0.22 +0.4
736,679 + OHPLBJKB_00719 0.22 +0.4
736,679 + OHPLBJKB_00719 0.22 -0.1
736,679 + OHPLBJKB_00719 0.22 +1.1
736,680 - OHPLBJKB_00719 0.23 +1.2
736,680 - OHPLBJKB_00719 0.23 +0.8
736,680 - OHPLBJKB_00719 0.23 +0.4
736,737 - OHPLBJKB_00719 0.28 -2.0
736,737 - OHPLBJKB_00719 0.28 +0.1
736,768 - OHPLBJKB_00719 0.31 +0.5
736,772 - OHPLBJKB_00719 0.31 -0.2
736,796 + OHPLBJKB_00719 0.33 +2.7
736,796 + OHPLBJKB_00719 0.33 +1.1
736,796 + OHPLBJKB_00719 0.33 +0.4
736,796 + OHPLBJKB_00719 0.33 -0.5
736,797 - OHPLBJKB_00719 0.33 -0.6
736,797 - OHPLBJKB_00719 0.33 +0.1
736,797 - OHPLBJKB_00719 0.33 +0.5
736,797 - OHPLBJKB_00719 0.33 -0.1
736,797 - OHPLBJKB_00719 0.33 +0.2
736,797 - OHPLBJKB_00719 0.33 -0.9
736,815 - OHPLBJKB_00719 0.35 +1.4
736,826 + OHPLBJKB_00719 0.36 -1.2
736,826 + OHPLBJKB_00719 0.36 -0.6
736,826 + OHPLBJKB_00719 0.36 -0.6
736,827 - OHPLBJKB_00719 0.36 -0.6
736,888 + OHPLBJKB_00719 0.42 -0.8
736,894 + OHPLBJKB_00719 0.42 +0.4
736,895 - OHPLBJKB_00719 0.43 -0.1
736,942 + OHPLBJKB_00719 0.47 +1.1
736,942 + OHPLBJKB_00719 0.47 -0.2
736,943 - OHPLBJKB_00719 0.47 +1.1
736,967 + OHPLBJKB_00719 0.49 +0.7
736,975 + OHPLBJKB_00719 0.50 -0.1
736,975 + OHPLBJKB_00719 0.50 -0.2
736,976 - OHPLBJKB_00719 0.50 +0.8
736,976 - OHPLBJKB_00719 0.50 -0.5
737,050 + OHPLBJKB_00719 0.57 +0.4
737,050 + OHPLBJKB_00719 0.57 -0.0
737,051 - OHPLBJKB_00719 0.57 -0.4
737,051 - OHPLBJKB_00719 0.57 +1.1
737,051 - OHPLBJKB_00719 0.57 -0.2
737,114 + OHPLBJKB_00719 0.63 +0.9
737,114 + OHPLBJKB_00719 0.63 -1.6
737,130 + OHPLBJKB_00719 0.65 +0.7
737,130 + OHPLBJKB_00719 0.65 +0.5
737,130 + OHPLBJKB_00719 0.65 -0.5
737,131 - OHPLBJKB_00719 0.65 -0.3
737,131 - OHPLBJKB_00719 0.65 +0.7
737,131 - OHPLBJKB_00719 0.65 +0.4
737,131 - OHPLBJKB_00719 0.65 -0.2
737,328 + OHPLBJKB_00719 0.83 -0.2
737,448 + +1.0
737,525 - +0.1
737,525 - +0.4
737,528 + +1.1
737,528 + -0.0
737,529 - +1.3
737,949 + OHPLBJKB_00720 0.41 +0.8
737,949 + OHPLBJKB_00720 0.41 -0.6
737,950 - OHPLBJKB_00720 0.41 -0.2
738,064 + OHPLBJKB_00720 0.52 -0.5
738,070 + OHPLBJKB_00720 0.52 +0.8
738,070 + OHPLBJKB_00720 0.52 -1.0
738,070 + OHPLBJKB_00720 0.52 -0.2
738,070 + OHPLBJKB_00720 0.52 +0.2
738,071 - OHPLBJKB_00720 0.52 -0.6
738,071 - OHPLBJKB_00720 0.52 -0.8
738,071 - OHPLBJKB_00720 0.52 +0.7
738,071 - OHPLBJKB_00720 0.52 +1.8
738,091 - OHPLBJKB_00720 0.54 -0.4
738,171 + OHPLBJKB_00720 0.62 -1.1
738,172 - OHPLBJKB_00720 0.62 -0.3
738,218 + OHPLBJKB_00720 0.66 -1.0
738,234 + OHPLBJKB_00720 0.67 -0.3
738,234 + OHPLBJKB_00720 0.67 -2.3
738,256 - OHPLBJKB_00720 0.69 +1.1
738,262 + OHPLBJKB_00720 0.70 -1.3
738,262 + OHPLBJKB_00720 0.70 -1.8
738,262 + OHPLBJKB_00720 0.70 +0.8
738,263 - OHPLBJKB_00720 0.70 +1.1
738,263 - OHPLBJKB_00720 0.70 -0.8
738,263 - OHPLBJKB_00720 0.70 +1.1
738,263 - OHPLBJKB_00720 0.70 -1.6
738,263 - OHPLBJKB_00720 0.70 -1.0
738,271 + OHPLBJKB_00720 0.71 +0.7
738,272 - OHPLBJKB_00720 0.71 +1.0
738,444 - OHPLBJKB_00720 0.87 +0.2
738,488 + -0.1
738,488 + -0.2
738,489 - +0.0
738,489 - +0.4

Or see this region's nucleotide sequence