Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00453

Experiment: HSDP5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00452 and OHPLBJKB_00453 are separated by 151 nucleotidesOHPLBJKB_00453 and OHPLBJKB_00454 are separated by 304 nucleotides OHPLBJKB_00452: OHPLBJKB_00452 - putative acrylyl-CoA reductase AcuI, at 462,855 to 463,829 _00452 OHPLBJKB_00453: OHPLBJKB_00453 - RNase E specificity factor CsrD, at 463,981 to 465,921 _00453 OHPLBJKB_00454: OHPLBJKB_00454 - Rod shape-determining protein MreB, at 466,226 to 467,269 _00454 Position (kb) 463 464 465 466Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 463.055 kb on + strand, within OHPLBJKB_00452at 463.055 kb on + strand, within OHPLBJKB_00452at 463.064 kb on + strand, within OHPLBJKB_00452at 463.064 kb on + strand, within OHPLBJKB_00452at 463.133 kb on - strand, within OHPLBJKB_00452at 463.261 kb on - strand, within OHPLBJKB_00452at 463.273 kb on + strand, within OHPLBJKB_00452at 463.273 kb on + strand, within OHPLBJKB_00452at 463.273 kb on + strand, within OHPLBJKB_00452at 463.273 kb on + strand, within OHPLBJKB_00452at 463.273 kb on + strand, within OHPLBJKB_00452at 463.274 kb on - strand, within OHPLBJKB_00452at 463.283 kb on + strand, within OHPLBJKB_00452at 463.325 kb on + strand, within OHPLBJKB_00452at 463.326 kb on - strand, within OHPLBJKB_00452at 463.579 kb on - strand, within OHPLBJKB_00452at 463.623 kb on + strand, within OHPLBJKB_00452at 463.706 kb on + strand, within OHPLBJKB_00452at 463.707 kb on - strand, within OHPLBJKB_00452at 463.708 kb on + strand, within OHPLBJKB_00452at 463.709 kb on - strand, within OHPLBJKB_00452at 463.709 kb on - strand, within OHPLBJKB_00452at 463.780 kb on - strandat 463.813 kb on - strandat 463.813 kb on - strandat 463.829 kb on + strandat 463.829 kb on + strandat 463.829 kb on + strandat 463.829 kb on + strandat 463.830 kb on - strandat 463.830 kb on - strandat 463.830 kb on - strandat 463.830 kb on - strandat 463.830 kb on - strandat 463.877 kb on + strandat 463.877 kb on + strandat 463.877 kb on + strandat 463.877 kb on + strandat 463.877 kb on + strandat 463.877 kb on + strandat 463.878 kb on - strandat 463.878 kb on - strandat 463.878 kb on - strandat 463.879 kb on + strandat 463.880 kb on - strandat 463.916 kb on + strandat 463.943 kb on - strandat 463.943 kb on - strandat 463.943 kb on - strandat 463.943 kb on - strandat 463.945 kb on + strandat 463.946 kb on - strandat 463.946 kb on - strandat 463.971 kb on + strandat 464.071 kb on + strandat 464.071 kb on + strandat 464.072 kb on - strandat 464.087 kb on - strandat 464.088 kb on + strandat 464.088 kb on + strandat 464.088 kb on + strandat 464.088 kb on + strandat 464.089 kb on - strandat 464.089 kb on - strandat 464.089 kb on - strandat 464.095 kb on - strandat 464.095 kb on - strandat 464.160 kb on - strandat 464.160 kb on - strandat 464.162 kb on + strandat 464.163 kb on - strandat 464.163 kb on - strandat 464.183 kb on + strand, within OHPLBJKB_00453at 464.183 kb on + strand, within OHPLBJKB_00453at 464.184 kb on - strand, within OHPLBJKB_00453at 464.200 kb on - strand, within OHPLBJKB_00453at 464.239 kb on + strand, within OHPLBJKB_00453at 464.239 kb on + strand, within OHPLBJKB_00453at 464.239 kb on + strand, within OHPLBJKB_00453at 464.239 kb on + strand, within OHPLBJKB_00453at 464.239 kb on + strand, within OHPLBJKB_00453at 464.240 kb on - strand, within OHPLBJKB_00453at 464.240 kb on - strand, within OHPLBJKB_00453at 464.240 kb on - strand, within OHPLBJKB_00453at 464.240 kb on - strand, within OHPLBJKB_00453at 464.240 kb on - strand, within OHPLBJKB_00453at 464.241 kb on + strand, within OHPLBJKB_00453at 464.241 kb on + strand, within OHPLBJKB_00453at 464.242 kb on - strand, within OHPLBJKB_00453at 464.242 kb on - strand, within OHPLBJKB_00453at 464.259 kb on + strand, within OHPLBJKB_00453at 464.260 kb on - strand, within OHPLBJKB_00453at 464.260 kb on - strand, within OHPLBJKB_00453at 464.264 kb on - strand, within OHPLBJKB_00453at 464.315 kb on + strand, within OHPLBJKB_00453at 464.348 kb on - strand, within OHPLBJKB_00453at 464.368 kb on + strand, within OHPLBJKB_00453at 464.369 kb on - strand, within OHPLBJKB_00453at 464.427 kb on + strand, within OHPLBJKB_00453at 464.503 kb on - strand, within OHPLBJKB_00453at 464.503 kb on - strand, within OHPLBJKB_00453at 464.508 kb on - strand, within OHPLBJKB_00453at 464.526 kb on + strand, within OHPLBJKB_00453at 464.527 kb on - strand, within OHPLBJKB_00453at 464.527 kb on - strand, within OHPLBJKB_00453at 464.527 kb on - strand, within OHPLBJKB_00453at 464.545 kb on + strand, within OHPLBJKB_00453at 464.546 kb on - strand, within OHPLBJKB_00453at 464.546 kb on - strand, within OHPLBJKB_00453at 464.546 kb on - strand, within OHPLBJKB_00453at 464.546 kb on - strand, within OHPLBJKB_00453at 464.546 kb on - strand, within OHPLBJKB_00453at 464.546 kb on - strand, within OHPLBJKB_00453at 464.546 kb on - strand, within OHPLBJKB_00453at 464.546 kb on - strand, within OHPLBJKB_00453at 464.632 kb on - strand, within OHPLBJKB_00453at 464.647 kb on + strand, within OHPLBJKB_00453at 464.735 kb on + strand, within OHPLBJKB_00453at 464.735 kb on + strand, within OHPLBJKB_00453at 464.735 kb on + strand, within OHPLBJKB_00453at 464.736 kb on - strand, within OHPLBJKB_00453at 464.736 kb on - strand, within OHPLBJKB_00453at 464.736 kb on - strand, within OHPLBJKB_00453at 464.781 kb on + strand, within OHPLBJKB_00453at 464.781 kb on + strand, within OHPLBJKB_00453at 464.781 kb on + strand, within OHPLBJKB_00453at 464.782 kb on - strand, within OHPLBJKB_00453at 464.856 kb on + strand, within OHPLBJKB_00453at 464.856 kb on + strand, within OHPLBJKB_00453at 464.856 kb on + strand, within OHPLBJKB_00453at 464.856 kb on + strand, within OHPLBJKB_00453at 464.856 kb on + strand, within OHPLBJKB_00453at 464.857 kb on - strand, within OHPLBJKB_00453at 464.933 kb on + strand, within OHPLBJKB_00453at 464.963 kb on + strand, within OHPLBJKB_00453at 464.980 kb on - strand, within OHPLBJKB_00453at 464.995 kb on - strand, within OHPLBJKB_00453at 465.015 kb on + strand, within OHPLBJKB_00453at 465.030 kb on + strand, within OHPLBJKB_00453at 465.031 kb on - strand, within OHPLBJKB_00453at 465.068 kb on + strand, within OHPLBJKB_00453at 465.096 kb on + strand, within OHPLBJKB_00453at 465.097 kb on - strand, within OHPLBJKB_00453at 465.097 kb on - strand, within OHPLBJKB_00453at 465.120 kb on + strand, within OHPLBJKB_00453at 465.121 kb on - strand, within OHPLBJKB_00453at 465.121 kb on - strand, within OHPLBJKB_00453at 465.129 kb on + strand, within OHPLBJKB_00453at 465.134 kb on - strand, within OHPLBJKB_00453at 465.134 kb on - strand, within OHPLBJKB_00453at 465.224 kb on - strand, within OHPLBJKB_00453at 465.241 kb on - strand, within OHPLBJKB_00453at 465.295 kb on - strand, within OHPLBJKB_00453at 465.306 kb on + strand, within OHPLBJKB_00453at 465.319 kb on + strand, within OHPLBJKB_00453at 465.319 kb on + strand, within OHPLBJKB_00453at 465.319 kb on + strand, within OHPLBJKB_00453at 465.319 kb on + strand, within OHPLBJKB_00453at 465.319 kb on + strand, within OHPLBJKB_00453at 465.319 kb on + strand, within OHPLBJKB_00453at 465.319 kb on + strand, within OHPLBJKB_00453at 465.319 kb on + strand, within OHPLBJKB_00453at 465.320 kb on - strand, within OHPLBJKB_00453at 465.320 kb on - strand, within OHPLBJKB_00453at 465.320 kb on - strand, within OHPLBJKB_00453at 465.320 kb on - strand, within OHPLBJKB_00453at 465.320 kb on - strand, within OHPLBJKB_00453at 465.320 kb on - strand, within OHPLBJKB_00453at 465.320 kb on - strand, within OHPLBJKB_00453at 465.322 kb on - strand, within OHPLBJKB_00453at 465.322 kb on - strand, within OHPLBJKB_00453at 465.322 kb on - strand, within OHPLBJKB_00453at 465.358 kb on + strand, within OHPLBJKB_00453at 465.359 kb on - strand, within OHPLBJKB_00453at 465.359 kb on - strand, within OHPLBJKB_00453at 465.359 kb on - strand, within OHPLBJKB_00453at 465.384 kb on + strand, within OHPLBJKB_00453at 465.385 kb on - strand, within OHPLBJKB_00453at 465.518 kb on + strand, within OHPLBJKB_00453at 465.522 kb on + strand, within OHPLBJKB_00453at 465.522 kb on + strand, within OHPLBJKB_00453at 465.522 kb on + strand, within OHPLBJKB_00453at 465.545 kb on + strand, within OHPLBJKB_00453at 465.545 kb on + strand, within OHPLBJKB_00453at 465.545 kb on + strand, within OHPLBJKB_00453at 465.546 kb on - strand, within OHPLBJKB_00453at 465.546 kb on - strand, within OHPLBJKB_00453at 465.555 kb on + strand, within OHPLBJKB_00453at 465.555 kb on + strand, within OHPLBJKB_00453at 465.555 kb on + strand, within OHPLBJKB_00453at 465.556 kb on - strand, within OHPLBJKB_00453at 465.556 kb on - strand, within OHPLBJKB_00453at 465.556 kb on - strand, within OHPLBJKB_00453at 465.556 kb on - strand, within OHPLBJKB_00453at 465.567 kb on - strand, within OHPLBJKB_00453at 465.567 kb on - strand, within OHPLBJKB_00453at 465.567 kb on - strand, within OHPLBJKB_00453at 465.567 kb on - strand, within OHPLBJKB_00453at 465.567 kb on - strand, within OHPLBJKB_00453at 465.584 kb on + strand, within OHPLBJKB_00453at 465.638 kb on + strand, within OHPLBJKB_00453at 465.639 kb on - strand, within OHPLBJKB_00453at 465.642 kb on + strand, within OHPLBJKB_00453at 465.643 kb on - strand, within OHPLBJKB_00453at 465.643 kb on - strand, within OHPLBJKB_00453at 465.663 kb on + strand, within OHPLBJKB_00453at 465.664 kb on - strand, within OHPLBJKB_00453at 465.837 kb on + strandat 465.883 kb on - strandat 465.885 kb on + strandat 465.886 kb on - strandat 465.910 kb on + strandat 465.951 kb on + strandat 466.010 kb on + strandat 466.011 kb on - strandat 466.011 kb on - strandat 466.011 kb on - strandat 466.011 kb on - strandat 466.028 kb on + strandat 466.067 kb on + strandat 466.097 kb on + strandat 466.098 kb on - strandat 466.131 kb on + strandat 466.132 kb on - strandat 466.132 kb on - strandat 466.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP5
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463,055 + OHPLBJKB_00452 0.21 +0.8
463,055 + OHPLBJKB_00452 0.21 +0.9
463,064 + OHPLBJKB_00452 0.21 -1.6
463,064 + OHPLBJKB_00452 0.21 -0.4
463,133 - OHPLBJKB_00452 0.29 -0.0
463,261 - OHPLBJKB_00452 0.42 -0.4
463,273 + OHPLBJKB_00452 0.43 -0.7
463,273 + OHPLBJKB_00452 0.43 -0.1
463,273 + OHPLBJKB_00452 0.43 +0.4
463,273 + OHPLBJKB_00452 0.43 +0.1
463,273 + OHPLBJKB_00452 0.43 +0.7
463,274 - OHPLBJKB_00452 0.43 -1.7
463,283 + OHPLBJKB_00452 0.44 -0.5
463,325 + OHPLBJKB_00452 0.48 -0.1
463,326 - OHPLBJKB_00452 0.48 -0.8
463,579 - OHPLBJKB_00452 0.74 -0.3
463,623 + OHPLBJKB_00452 0.79 -1.0
463,706 + OHPLBJKB_00452 0.87 +0.9
463,707 - OHPLBJKB_00452 0.87 -0.4
463,708 + OHPLBJKB_00452 0.87 -0.4
463,709 - OHPLBJKB_00452 0.88 -1.0
463,709 - OHPLBJKB_00452 0.88 -0.5
463,780 - -0.1
463,813 - -0.1
463,813 - +0.8
463,829 + -0.3
463,829 + -0.1
463,829 + -0.2
463,829 + -0.7
463,830 - +0.1
463,830 - -0.1
463,830 - +0.4
463,830 - -0.4
463,830 - -0.1
463,877 + -1.6
463,877 + -0.3
463,877 + -0.0
463,877 + +0.1
463,877 + -1.2
463,877 + +1.0
463,878 - -0.5
463,878 - +1.3
463,878 - -0.1
463,879 + +0.9
463,880 - -1.8
463,916 + -0.3
463,943 - +1.8
463,943 - -1.1
463,943 - -0.1
463,943 - +0.3
463,945 + +0.2
463,946 - -0.7
463,946 - +0.0
463,971 + -1.0
464,071 + +2.9
464,071 + -1.3
464,072 - +0.4
464,087 - +1.1
464,088 + -0.4
464,088 + +0.7
464,088 + +1.4
464,088 + +0.2
464,089 - -0.4
464,089 - +0.7
464,089 - -0.1
464,095 - +0.6
464,095 - +0.6
464,160 - -1.2
464,160 - -0.2
464,162 + +0.4
464,163 - -0.3
464,163 - -1.6
464,183 + OHPLBJKB_00453 0.10 +1.1
464,183 + OHPLBJKB_00453 0.10 +0.5
464,184 - OHPLBJKB_00453 0.10 +1.1
464,200 - OHPLBJKB_00453 0.11 -1.2
464,239 + OHPLBJKB_00453 0.13 +0.7
464,239 + OHPLBJKB_00453 0.13 -0.8
464,239 + OHPLBJKB_00453 0.13 -0.4
464,239 + OHPLBJKB_00453 0.13 -2.2
464,239 + OHPLBJKB_00453 0.13 +0.3
464,240 - OHPLBJKB_00453 0.13 -1.5
464,240 - OHPLBJKB_00453 0.13 +0.3
464,240 - OHPLBJKB_00453 0.13 -0.6
464,240 - OHPLBJKB_00453 0.13 -0.7
464,240 - OHPLBJKB_00453 0.13 +0.1
464,241 + OHPLBJKB_00453 0.13 -0.0
464,241 + OHPLBJKB_00453 0.13 -0.8
464,242 - OHPLBJKB_00453 0.13 +1.4
464,242 - OHPLBJKB_00453 0.13 +0.7
464,259 + OHPLBJKB_00453 0.14 -0.1
464,260 - OHPLBJKB_00453 0.14 +0.2
464,260 - OHPLBJKB_00453 0.14 -0.8
464,264 - OHPLBJKB_00453 0.15 -0.0
464,315 + OHPLBJKB_00453 0.17 +0.1
464,348 - OHPLBJKB_00453 0.19 -0.2
464,368 + OHPLBJKB_00453 0.20 +0.1
464,369 - OHPLBJKB_00453 0.20 +0.3
464,427 + OHPLBJKB_00453 0.23 +1.3
464,503 - OHPLBJKB_00453 0.27 -0.3
464,503 - OHPLBJKB_00453 0.27 -0.1
464,508 - OHPLBJKB_00453 0.27 +0.7
464,526 + OHPLBJKB_00453 0.28 -0.3
464,527 - OHPLBJKB_00453 0.28 +0.2
464,527 - OHPLBJKB_00453 0.28 +0.9
464,527 - OHPLBJKB_00453 0.28 +0.4
464,545 + OHPLBJKB_00453 0.29 -1.3
464,546 - OHPLBJKB_00453 0.29 -1.9
464,546 - OHPLBJKB_00453 0.29 +0.7
464,546 - OHPLBJKB_00453 0.29 -0.5
464,546 - OHPLBJKB_00453 0.29 +1.7
464,546 - OHPLBJKB_00453 0.29 +0.2
464,546 - OHPLBJKB_00453 0.29 -0.1
464,546 - OHPLBJKB_00453 0.29 +1.0
464,546 - OHPLBJKB_00453 0.29 -0.1
464,632 - OHPLBJKB_00453 0.34 +0.4
464,647 + OHPLBJKB_00453 0.34 +0.1
464,735 + OHPLBJKB_00453 0.39 -0.9
464,735 + OHPLBJKB_00453 0.39 +0.4
464,735 + OHPLBJKB_00453 0.39 -0.6
464,736 - OHPLBJKB_00453 0.39 -0.9
464,736 - OHPLBJKB_00453 0.39 +0.4
464,736 - OHPLBJKB_00453 0.39 +0.2
464,781 + OHPLBJKB_00453 0.41 -0.5
464,781 + OHPLBJKB_00453 0.41 +2.4
464,781 + OHPLBJKB_00453 0.41 +0.0
464,782 - OHPLBJKB_00453 0.41 +0.1
464,856 + OHPLBJKB_00453 0.45 +0.1
464,856 + OHPLBJKB_00453 0.45 +0.4
464,856 + OHPLBJKB_00453 0.45 +0.3
464,856 + OHPLBJKB_00453 0.45 +0.7
464,856 + OHPLBJKB_00453 0.45 -0.8
464,857 - OHPLBJKB_00453 0.45 -0.9
464,933 + OHPLBJKB_00453 0.49 +0.4
464,963 + OHPLBJKB_00453 0.51 +1.2
464,980 - OHPLBJKB_00453 0.51 -0.4
464,995 - OHPLBJKB_00453 0.52 -0.5
465,015 + OHPLBJKB_00453 0.53 +0.7
465,030 + OHPLBJKB_00453 0.54 -1.7
465,031 - OHPLBJKB_00453 0.54 -0.5
465,068 + OHPLBJKB_00453 0.56 -1.5
465,096 + OHPLBJKB_00453 0.57 -0.1
465,097 - OHPLBJKB_00453 0.57 -0.8
465,097 - OHPLBJKB_00453 0.57 -0.1
465,120 + OHPLBJKB_00453 0.59 +1.7
465,121 - OHPLBJKB_00453 0.59 -0.0
465,121 - OHPLBJKB_00453 0.59 -1.0
465,129 + OHPLBJKB_00453 0.59 -1.4
465,134 - OHPLBJKB_00453 0.59 +0.2
465,134 - OHPLBJKB_00453 0.59 +0.6
465,224 - OHPLBJKB_00453 0.64 -1.4
465,241 - OHPLBJKB_00453 0.65 -0.8
465,295 - OHPLBJKB_00453 0.68 +2.1
465,306 + OHPLBJKB_00453 0.68 +0.1
465,319 + OHPLBJKB_00453 0.69 -0.8
465,319 + OHPLBJKB_00453 0.69 +0.1
465,319 + OHPLBJKB_00453 0.69 -0.3
465,319 + OHPLBJKB_00453 0.69 -0.4
465,319 + OHPLBJKB_00453 0.69 -0.1
465,319 + OHPLBJKB_00453 0.69 -0.4
465,319 + OHPLBJKB_00453 0.69 -0.1
465,319 + OHPLBJKB_00453 0.69 +1.2
465,320 - OHPLBJKB_00453 0.69 -0.7
465,320 - OHPLBJKB_00453 0.69 -0.3
465,320 - OHPLBJKB_00453 0.69 +2.4
465,320 - OHPLBJKB_00453 0.69 +1.1
465,320 - OHPLBJKB_00453 0.69 +6.4
465,320 - OHPLBJKB_00453 0.69 -1.5
465,320 - OHPLBJKB_00453 0.69 +1.4
465,322 - OHPLBJKB_00453 0.69 +0.8
465,322 - OHPLBJKB_00453 0.69 +0.7
465,322 - OHPLBJKB_00453 0.69 +0.9
465,358 + OHPLBJKB_00453 0.71 +1.0
465,359 - OHPLBJKB_00453 0.71 +0.8
465,359 - OHPLBJKB_00453 0.71 -0.9
465,359 - OHPLBJKB_00453 0.71 +0.5
465,384 + OHPLBJKB_00453 0.72 +0.6
465,385 - OHPLBJKB_00453 0.72 -0.4
465,518 + OHPLBJKB_00453 0.79 -0.3
465,522 + OHPLBJKB_00453 0.79 -0.3
465,522 + OHPLBJKB_00453 0.79 -1.3
465,522 + OHPLBJKB_00453 0.79 -0.0
465,545 + OHPLBJKB_00453 0.81 -0.6
465,545 + OHPLBJKB_00453 0.81 +1.0
465,545 + OHPLBJKB_00453 0.81 -0.0
465,546 - OHPLBJKB_00453 0.81 +0.6
465,546 - OHPLBJKB_00453 0.81 +0.7
465,555 + OHPLBJKB_00453 0.81 +1.7
465,555 + OHPLBJKB_00453 0.81 -0.4
465,555 + OHPLBJKB_00453 0.81 -0.7
465,556 - OHPLBJKB_00453 0.81 +0.7
465,556 - OHPLBJKB_00453 0.81 -0.4
465,556 - OHPLBJKB_00453 0.81 +0.2
465,556 - OHPLBJKB_00453 0.81 +0.7
465,567 - OHPLBJKB_00453 0.82 -2.5
465,567 - OHPLBJKB_00453 0.82 -0.3
465,567 - OHPLBJKB_00453 0.82 +1.1
465,567 - OHPLBJKB_00453 0.82 -0.4
465,567 - OHPLBJKB_00453 0.82 +1.4
465,584 + OHPLBJKB_00453 0.83 +0.9
465,638 + OHPLBJKB_00453 0.85 +1.1
465,639 - OHPLBJKB_00453 0.85 -0.2
465,642 + OHPLBJKB_00453 0.86 +0.5
465,643 - OHPLBJKB_00453 0.86 -0.4
465,643 - OHPLBJKB_00453 0.86 +2.7
465,663 + OHPLBJKB_00453 0.87 -1.1
465,664 - OHPLBJKB_00453 0.87 +0.6
465,837 + -1.5
465,883 - +0.8
465,885 + -0.5
465,886 - -0.2
465,910 + +1.2
465,951 + +0.3
466,010 + -0.5
466,011 - +0.9
466,011 - -0.4
466,011 - -0.6
466,011 - -0.6
466,028 + +0.2
466,067 + -1.7
466,097 + -0.2
466,098 - +0.4
466,131 + +0.4
466,132 - -0.1
466,132 - +0.7
466,132 - -0.7

Or see this region's nucleotide sequence