Experiment: HSDP5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00180 and OHPLBJKB_00181 are separated by 48 nucleotides OHPLBJKB_00181 and OHPLBJKB_00182 are separated by 447 nucleotides
OHPLBJKB_00180: OHPLBJKB_00180 - Inner membrane protein YhjD, at 195,214 to 196,227
_00180
OHPLBJKB_00181: OHPLBJKB_00181 - HTH-type transcriptional regulator DmlR, at 196,276 to 197,247
_00181
OHPLBJKB_00182: OHPLBJKB_00182 - Putative HTH-type transcriptional regulator YhjB, at 197,695 to 198,297
_00182
Position (kb) 196
197
198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 195.383 kb on + strand, within OHPLBJKB_00180 at 195.383 kb on + strand, within OHPLBJKB_00180 at 195.383 kb on + strand, within OHPLBJKB_00180 at 195.384 kb on - strand, within OHPLBJKB_00180 at 195.384 kb on - strand, within OHPLBJKB_00180 at 195.399 kb on + strand, within OHPLBJKB_00180 at 195.418 kb on - strand, within OHPLBJKB_00180 at 195.503 kb on + strand, within OHPLBJKB_00180 at 195.504 kb on - strand, within OHPLBJKB_00180 at 195.586 kb on - strand, within OHPLBJKB_00180 at 195.589 kb on - strand, within OHPLBJKB_00180 at 195.683 kb on + strand, within OHPLBJKB_00180 at 195.683 kb on + strand, within OHPLBJKB_00180 at 195.684 kb on - strand, within OHPLBJKB_00180 at 195.788 kb on + strand, within OHPLBJKB_00180 at 195.826 kb on - strand, within OHPLBJKB_00180 at 195.826 kb on - strand, within OHPLBJKB_00180 at 195.919 kb on + strand, within OHPLBJKB_00180 at 195.919 kb on + strand, within OHPLBJKB_00180 at 195.982 kb on + strand, within OHPLBJKB_00180 at 196.004 kb on + strand, within OHPLBJKB_00180 at 196.004 kb on + strand, within OHPLBJKB_00180 at 196.005 kb on - strand, within OHPLBJKB_00180 at 196.005 kb on - strand, within OHPLBJKB_00180 at 196.077 kb on + strand, within OHPLBJKB_00180 at 196.135 kb on - strand at 196.267 kb on + strand at 196.269 kb on + strand at 196.270 kb on - strand at 196.298 kb on - strand at 196.327 kb on + strand at 196.358 kb on + strand at 196.400 kb on - strand, within OHPLBJKB_00181 at 196.402 kb on + strand, within OHPLBJKB_00181 at 196.402 kb on + strand, within OHPLBJKB_00181 at 196.410 kb on + strand, within OHPLBJKB_00181 at 196.511 kb on - strand, within OHPLBJKB_00181 at 196.534 kb on - strand, within OHPLBJKB_00181 at 196.534 kb on - strand, within OHPLBJKB_00181 at 196.582 kb on + strand, within OHPLBJKB_00181 at 196.583 kb on - strand, within OHPLBJKB_00181 at 196.583 kb on - strand, within OHPLBJKB_00181 at 196.599 kb on + strand, within OHPLBJKB_00181 at 196.599 kb on + strand, within OHPLBJKB_00181 at 196.599 kb on + strand, within OHPLBJKB_00181 at 196.599 kb on + strand, within OHPLBJKB_00181 at 196.599 kb on + strand, within OHPLBJKB_00181 at 196.599 kb on + strand, within OHPLBJKB_00181 at 196.599 kb on + strand, within OHPLBJKB_00181 at 196.599 kb on + strand, within OHPLBJKB_00181 at 196.600 kb on - strand, within OHPLBJKB_00181 at 196.601 kb on + strand, within OHPLBJKB_00181 at 196.601 kb on + strand, within OHPLBJKB_00181 at 196.610 kb on - strand, within OHPLBJKB_00181 at 196.664 kb on + strand, within OHPLBJKB_00181 at 196.665 kb on - strand, within OHPLBJKB_00181 at 196.747 kb on + strand, within OHPLBJKB_00181 at 196.776 kb on + strand, within OHPLBJKB_00181 at 196.777 kb on - strand, within OHPLBJKB_00181 at 196.777 kb on - strand, within OHPLBJKB_00181 at 196.780 kb on + strand, within OHPLBJKB_00181 at 196.894 kb on + strand, within OHPLBJKB_00181 at 196.895 kb on - strand, within OHPLBJKB_00181 at 196.900 kb on - strand, within OHPLBJKB_00181 at 196.979 kb on + strand, within OHPLBJKB_00181 at 196.980 kb on - strand, within OHPLBJKB_00181 at 196.982 kb on + strand, within OHPLBJKB_00181 at 196.982 kb on + strand, within OHPLBJKB_00181 at 196.982 kb on + strand, within OHPLBJKB_00181 at 196.982 kb on + strand, within OHPLBJKB_00181 at 196.983 kb on - strand, within OHPLBJKB_00181 at 196.983 kb on - strand, within OHPLBJKB_00181 at 196.983 kb on - strand, within OHPLBJKB_00181 at 196.983 kb on - strand, within OHPLBJKB_00181 at 196.983 kb on - strand, within OHPLBJKB_00181 at 196.983 kb on - strand, within OHPLBJKB_00181 at 197.066 kb on - strand, within OHPLBJKB_00181 at 197.352 kb on + strand at 197.390 kb on + strand at 197.475 kb on + strand at 197.475 kb on + strand at 197.476 kb on - strand at 197.476 kb on - strand at 197.476 kb on - strand at 197.478 kb on + strand at 197.491 kb on - strand at 197.491 kb on - strand at 197.517 kb on + strand at 197.548 kb on - strand at 197.558 kb on - strand at 197.574 kb on - strand at 197.674 kb on + strand at 197.675 kb on - strand at 197.675 kb on - strand at 197.702 kb on + strand at 197.730 kb on + strand at 197.731 kb on - strand at 197.764 kb on - strand, within OHPLBJKB_00182 at 197.778 kb on + strand, within OHPLBJKB_00182 at 197.778 kb on + strand, within OHPLBJKB_00182 at 197.827 kb on + strand, within OHPLBJKB_00182 at 197.840 kb on + strand, within OHPLBJKB_00182 at 197.840 kb on + strand, within OHPLBJKB_00182 at 197.840 kb on + strand, within OHPLBJKB_00182 at 197.841 kb on - strand, within OHPLBJKB_00182 at 197.841 kb on - strand, within OHPLBJKB_00182 at 197.841 kb on - strand, within OHPLBJKB_00182 at 197.841 kb on - strand, within OHPLBJKB_00182 at 197.844 kb on + strand, within OHPLBJKB_00182 at 197.844 kb on + strand, within OHPLBJKB_00182 at 197.844 kb on + strand, within OHPLBJKB_00182 at 197.844 kb on + strand, within OHPLBJKB_00182 at 197.845 kb on - strand, within OHPLBJKB_00182 at 197.979 kb on + strand, within OHPLBJKB_00182 at 197.980 kb on - strand, within OHPLBJKB_00182 at 198.036 kb on - strand, within OHPLBJKB_00182 at 198.040 kb on - strand, within OHPLBJKB_00182 at 198.102 kb on + strand, within OHPLBJKB_00182 at 198.103 kb on - strand, within OHPLBJKB_00182 at 198.143 kb on + strand, within OHPLBJKB_00182 at 198.171 kb on + strand, within OHPLBJKB_00182 at 198.172 kb on - strand, within OHPLBJKB_00182 at 198.172 kb on - strand, within OHPLBJKB_00182 at 198.172 kb on - strand, within OHPLBJKB_00182 at 198.172 kb on - strand, within OHPLBJKB_00182 at 198.196 kb on - strand, within OHPLBJKB_00182
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP5 remove 195,383 + OHPLBJKB_00180 0.17 -0.8 195,383 + OHPLBJKB_00180 0.17 -0.8 195,383 + OHPLBJKB_00180 0.17 -1.6 195,384 - OHPLBJKB_00180 0.17 +0.0 195,384 - OHPLBJKB_00180 0.17 +0.5 195,399 + OHPLBJKB_00180 0.18 -0.8 195,418 - OHPLBJKB_00180 0.20 -0.0 195,503 + OHPLBJKB_00180 0.29 -0.6 195,504 - OHPLBJKB_00180 0.29 -0.3 195,586 - OHPLBJKB_00180 0.37 -0.8 195,589 - OHPLBJKB_00180 0.37 -0.7 195,683 + OHPLBJKB_00180 0.46 +0.9 195,683 + OHPLBJKB_00180 0.46 -0.5 195,684 - OHPLBJKB_00180 0.46 -0.3 195,788 + OHPLBJKB_00180 0.57 -1.4 195,826 - OHPLBJKB_00180 0.60 +0.5 195,826 - OHPLBJKB_00180 0.60 -0.1 195,919 + OHPLBJKB_00180 0.70 -2.2 195,919 + OHPLBJKB_00180 0.70 -0.3 195,982 + OHPLBJKB_00180 0.76 +0.4 196,004 + OHPLBJKB_00180 0.78 +0.7 196,004 + OHPLBJKB_00180 0.78 +0.0 196,005 - OHPLBJKB_00180 0.78 -0.8 196,005 - OHPLBJKB_00180 0.78 -1.3 196,077 + OHPLBJKB_00180 0.85 -1.2 196,135 - -1.5 196,267 + +0.1 196,269 + -1.2 196,270 - -0.5 196,298 - -0.2 196,327 + +1.5 196,358 + -1.7 196,400 - OHPLBJKB_00181 0.13 -1.0 196,402 + OHPLBJKB_00181 0.13 -0.1 196,402 + OHPLBJKB_00181 0.13 -0.2 196,410 + OHPLBJKB_00181 0.14 +0.9 196,511 - OHPLBJKB_00181 0.24 -1.8 196,534 - OHPLBJKB_00181 0.27 -0.5 196,534 - OHPLBJKB_00181 0.27 +1.8 196,582 + OHPLBJKB_00181 0.31 +0.2 196,583 - OHPLBJKB_00181 0.32 -2.0 196,583 - OHPLBJKB_00181 0.32 +0.3 196,599 + OHPLBJKB_00181 0.33 +1.2 196,599 + OHPLBJKB_00181 0.33 +0.2 196,599 + OHPLBJKB_00181 0.33 +0.8 196,599 + OHPLBJKB_00181 0.33 -0.1 196,599 + OHPLBJKB_00181 0.33 +0.8 196,599 + OHPLBJKB_00181 0.33 +0.0 196,599 + OHPLBJKB_00181 0.33 +0.5 196,599 + OHPLBJKB_00181 0.33 -0.1 196,600 - OHPLBJKB_00181 0.33 +0.3 196,601 + OHPLBJKB_00181 0.33 -0.9 196,601 + OHPLBJKB_00181 0.33 +0.7 196,610 - OHPLBJKB_00181 0.34 -1.2 196,664 + OHPLBJKB_00181 0.40 -0.2 196,665 - OHPLBJKB_00181 0.40 -0.7 196,747 + OHPLBJKB_00181 0.48 -1.2 196,776 + OHPLBJKB_00181 0.51 +0.7 196,777 - OHPLBJKB_00181 0.52 +0.2 196,777 - OHPLBJKB_00181 0.52 +1.4 196,780 + OHPLBJKB_00181 0.52 -0.9 196,894 + OHPLBJKB_00181 0.64 -1.9 196,895 - OHPLBJKB_00181 0.64 -0.8 196,900 - OHPLBJKB_00181 0.64 +0.0 196,979 + OHPLBJKB_00181 0.72 +0.5 196,980 - OHPLBJKB_00181 0.72 -0.3 196,982 + OHPLBJKB_00181 0.73 +0.5 196,982 + OHPLBJKB_00181 0.73 +0.2 196,982 + OHPLBJKB_00181 0.73 -0.4 196,982 + OHPLBJKB_00181 0.73 -0.5 196,983 - OHPLBJKB_00181 0.73 -0.6 196,983 - OHPLBJKB_00181 0.73 +0.3 196,983 - OHPLBJKB_00181 0.73 -0.1 196,983 - OHPLBJKB_00181 0.73 +0.4 196,983 - OHPLBJKB_00181 0.73 +0.8 196,983 - OHPLBJKB_00181 0.73 -1.2 197,066 - OHPLBJKB_00181 0.81 -1.7 197,352 + -0.3 197,390 + -1.5 197,475 + -0.1 197,475 + +2.2 197,476 - -1.6 197,476 - -0.1 197,476 - -0.8 197,478 + +0.2 197,491 - +1.2 197,491 - +1.5 197,517 + +1.8 197,548 - -0.2 197,558 - -0.1 197,574 - -0.4 197,674 + -1.4 197,675 - +0.1 197,675 - +0.7 197,702 + -0.9 197,730 + +0.5 197,731 - +0.4 197,764 - OHPLBJKB_00182 0.11 +0.8 197,778 + OHPLBJKB_00182 0.14 +1.5 197,778 + OHPLBJKB_00182 0.14 -1.7 197,827 + OHPLBJKB_00182 0.22 +2.5 197,840 + OHPLBJKB_00182 0.24 -1.9 197,840 + OHPLBJKB_00182 0.24 +0.1 197,840 + OHPLBJKB_00182 0.24 -0.2 197,841 - OHPLBJKB_00182 0.24 +0.0 197,841 - OHPLBJKB_00182 0.24 -0.7 197,841 - OHPLBJKB_00182 0.24 -0.3 197,841 - OHPLBJKB_00182 0.24 -0.2 197,844 + OHPLBJKB_00182 0.25 -0.3 197,844 + OHPLBJKB_00182 0.25 -0.2 197,844 + OHPLBJKB_00182 0.25 +0.2 197,844 + OHPLBJKB_00182 0.25 +1.4 197,845 - OHPLBJKB_00182 0.25 -1.9 197,979 + OHPLBJKB_00182 0.47 -0.4 197,980 - OHPLBJKB_00182 0.47 -0.6 198,036 - OHPLBJKB_00182 0.57 -0.3 198,040 - OHPLBJKB_00182 0.57 +0.0 198,102 + OHPLBJKB_00182 0.67 +0.6 198,103 - OHPLBJKB_00182 0.68 -0.1 198,143 + OHPLBJKB_00182 0.74 +0.2 198,171 + OHPLBJKB_00182 0.79 +0.7 198,172 - OHPLBJKB_00182 0.79 +0.1 198,172 - OHPLBJKB_00182 0.79 -0.1 198,172 - OHPLBJKB_00182 0.79 +0.4 198,172 - OHPLBJKB_00182 0.79 +0.3 198,196 - OHPLBJKB_00182 0.83 -0.7
Or see this region's nucleotide sequence