Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23330 and LU632_RS23335 are separated by 9 nucleotides LU632_RS23335 and LU632_RS23340 overlap by 8 nucleotides LU632_RS23340 and sbmA are separated by 58 nucleotides sbmA and LU632_RS23350 are separated by 677 nucleotides
LU632_RS23330: LU632_RS23330 - dihydroxyacetone kinase subunit DhaK, at 4,445,063 to 4,445,956
_RS23330
LU632_RS23335: LU632_RS23335 - hypothetical protein, at 4,445,966 to 4,446,136
_RS23335
LU632_RS23340: LU632_RS23340 - dihydroxyacetone kinase subunit L, at 4,446,129 to 4,446,281
_RS23340
LU632_RS23345: sbmA - peptide antibiotic transporter SbmA, at 4,446,340 to 4,447,539
sbmA
LU632_RS23350: LU632_RS23350 - IS1 family transposase, at 4,448,217 to 4,448,914
_RS23350
Position (kb) 4446
4447
4448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4445.353 kb on - strand, within LU632_RS23330 at 4445.658 kb on + strand, within LU632_RS23330 at 4445.658 kb on + strand, within LU632_RS23330 at 4445.685 kb on + strand, within LU632_RS23330 at 4445.685 kb on + strand, within LU632_RS23330 at 4445.752 kb on - strand, within LU632_RS23330 at 4445.955 kb on - strand at 4445.955 kb on - strand at 4446.027 kb on + strand, within LU632_RS23335 at 4446.115 kb on + strand, within LU632_RS23335 at 4446.116 kb on - strand, within LU632_RS23335 at 4446.128 kb on + strand at 4446.128 kb on + strand at 4446.203 kb on + strand, within LU632_RS23340 at 4446.279 kb on + strand at 4446.280 kb on - strand at 4446.377 kb on - strand at 4446.384 kb on + strand at 4446.386 kb on + strand at 4446.431 kb on + strand at 4446.465 kb on + strand, within sbmA at 4446.507 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.582 kb on - strand, within sbmA at 4446.582 kb on - strand, within sbmA at 4446.903 kb on + strand, within sbmA at 4446.907 kb on - strand, within sbmA at 4446.907 kb on - strand, within sbmA at 4446.992 kb on - strand, within sbmA at 4447.011 kb on + strand, within sbmA at 4447.011 kb on + strand, within sbmA at 4447.012 kb on - strand, within sbmA at 4447.013 kb on + strand, within sbmA at 4447.013 kb on + strand, within sbmA at 4447.013 kb on + strand, within sbmA at 4447.013 kb on + strand, within sbmA at 4447.013 kb on + strand, within sbmA at 4447.013 kb on + strand, within sbmA at 4447.014 kb on - strand, within sbmA at 4447.014 kb on - strand, within sbmA at 4447.014 kb on - strand, within sbmA at 4447.014 kb on - strand, within sbmA at 4447.014 kb on - strand, within sbmA at 4447.068 kb on + strand, within sbmA at 4447.068 kb on + strand, within sbmA at 4447.076 kb on - strand, within sbmA at 4447.104 kb on + strand, within sbmA at 4447.105 kb on - strand, within sbmA at 4447.185 kb on + strand, within sbmA at 4447.187 kb on + strand, within sbmA at 4447.199 kb on + strand, within sbmA at 4447.199 kb on + strand, within sbmA at 4447.300 kb on - strand, within sbmA at 4447.300 kb on - strand, within sbmA at 4447.352 kb on + strand, within sbmA at 4447.352 kb on + strand, within sbmA at 4447.353 kb on - strand, within sbmA at 4447.353 kb on - strand, within sbmA at 4447.534 kb on - strand at 4447.567 kb on + strand at 4447.568 kb on - strand at 4447.569 kb on + strand at 4447.670 kb on - strand at 4447.686 kb on - strand at 4447.890 kb on - strand at 4447.892 kb on - strand at 4447.892 kb on - strand at 4448.043 kb on - strand at 4448.082 kb on - strand at 4448.088 kb on - strand at 4448.130 kb on + strand at 4448.146 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1) remove 4,445,353 - LU632_RS23330 0.32 +6.3 4,445,658 + LU632_RS23330 0.67 -1.8 4,445,658 + LU632_RS23330 0.67 -0.6 4,445,685 + LU632_RS23330 0.70 +0.1 4,445,685 + LU632_RS23330 0.70 -2.6 4,445,752 - LU632_RS23330 0.77 -1.6 4,445,955 - -2.1 4,445,955 - -1.1 4,446,027 + LU632_RS23335 0.36 -0.1 4,446,115 + LU632_RS23335 0.87 +1.1 4,446,116 - LU632_RS23335 0.88 +0.3 4,446,128 + -0.8 4,446,128 + +0.2 4,446,203 + LU632_RS23340 0.48 +1.1 4,446,279 + +1.7 4,446,280 - +1.9 4,446,377 - +0.1 4,446,384 + +0.4 4,446,386 + -2.0 4,446,431 + -0.4 4,446,465 + sbmA LU632_RS23345 0.10 -1.0 4,446,507 + sbmA LU632_RS23345 0.14 +0.5 4,446,581 + sbmA LU632_RS23345 0.20 +1.5 4,446,581 + sbmA LU632_RS23345 0.20 -1.2 4,446,581 + sbmA LU632_RS23345 0.20 -0.3 4,446,581 + sbmA LU632_RS23345 0.20 -3.2 4,446,582 - sbmA LU632_RS23345 0.20 -0.7 4,446,582 - sbmA LU632_RS23345 0.20 +0.5 4,446,903 + sbmA LU632_RS23345 0.47 +1.0 4,446,907 - sbmA LU632_RS23345 0.47 +2.4 4,446,907 - sbmA LU632_RS23345 0.47 +0.6 4,446,992 - sbmA LU632_RS23345 0.54 -0.2 4,447,011 + sbmA LU632_RS23345 0.56 +2.8 4,447,011 + sbmA LU632_RS23345 0.56 +0.2 4,447,012 - sbmA LU632_RS23345 0.56 -2.0 4,447,013 + sbmA LU632_RS23345 0.56 +1.0 4,447,013 + sbmA LU632_RS23345 0.56 +0.2 4,447,013 + sbmA LU632_RS23345 0.56 -0.2 4,447,013 + sbmA LU632_RS23345 0.56 -1.0 4,447,013 + sbmA LU632_RS23345 0.56 -2.0 4,447,013 + sbmA LU632_RS23345 0.56 +0.0 4,447,014 - sbmA LU632_RS23345 0.56 +0.8 4,447,014 - sbmA LU632_RS23345 0.56 +0.1 4,447,014 - sbmA LU632_RS23345 0.56 -0.1 4,447,014 - sbmA LU632_RS23345 0.56 +4.1 4,447,014 - sbmA LU632_RS23345 0.56 +2.8 4,447,068 + sbmA LU632_RS23345 0.61 +1.5 4,447,068 + sbmA LU632_RS23345 0.61 +3.2 4,447,076 - sbmA LU632_RS23345 0.61 +0.2 4,447,104 + sbmA LU632_RS23345 0.64 -1.1 4,447,105 - sbmA LU632_RS23345 0.64 +0.1 4,447,185 + sbmA LU632_RS23345 0.70 +1.8 4,447,187 + sbmA LU632_RS23345 0.71 +0.6 4,447,199 + sbmA LU632_RS23345 0.72 -1.0 4,447,199 + sbmA LU632_RS23345 0.72 +0.2 4,447,300 - sbmA LU632_RS23345 0.80 +1.8 4,447,300 - sbmA LU632_RS23345 0.80 +3.5 4,447,352 + sbmA LU632_RS23345 0.84 -0.1 4,447,352 + sbmA LU632_RS23345 0.84 +2.2 4,447,353 - sbmA LU632_RS23345 0.84 +1.2 4,447,353 - sbmA LU632_RS23345 0.84 -1.8 4,447,534 - +0.2 4,447,567 + +0.8 4,447,568 - -0.7 4,447,569 + -3.0 4,447,670 - +1.2 4,447,686 - +1.0 4,447,890 - +0.1 4,447,892 - -0.6 4,447,892 - +1.9 4,448,043 - +0.9 4,448,082 - +0.4 4,448,088 - +0.7 4,448,130 + +3.3 4,448,146 + -1.0
Or see this region's nucleotide sequence