Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cpxA and trmL are separated by 42 nucleotides trmL and cysE overlap by 4 nucleotides cysE and gpsA are separated by 65 nucleotides
LU632_RS21860: cpxA - envelope stress sensor histidine kinase CpxA, at 4,176,086 to 4,177,462
cpxA
LU632_RS21865: trmL - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 4,177,505 to 4,177,981
trmL
LU632_RS21870: cysE - serine O-acetyltransferase, at 4,177,978 to 4,178,799
cysE
LU632_RS21875: gpsA - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 4,178,865 to 4,179,884
gpsA
Position (kb) 4177
4178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4176.507 kb on - strand, within cpxA at 4176.515 kb on + strand, within cpxA at 4176.553 kb on + strand, within cpxA at 4176.585 kb on + strand, within cpxA at 4176.604 kb on - strand, within cpxA at 4176.604 kb on - strand, within cpxA at 4176.604 kb on - strand, within cpxA at 4176.607 kb on + strand, within cpxA at 4176.834 kb on + strand, within cpxA at 4176.907 kb on - strand, within cpxA at 4176.907 kb on - strand, within cpxA at 4176.907 kb on - strand, within cpxA at 4176.915 kb on + strand, within cpxA at 4176.915 kb on + strand, within cpxA at 4176.916 kb on - strand, within cpxA at 4176.982 kb on + strand, within cpxA at 4176.982 kb on + strand, within cpxA at 4176.983 kb on - strand, within cpxA at 4176.983 kb on - strand, within cpxA at 4176.983 kb on - strand, within cpxA at 4177.084 kb on + strand, within cpxA at 4177.085 kb on - strand, within cpxA at 4177.085 kb on - strand, within cpxA at 4177.086 kb on + strand, within cpxA at 4177.086 kb on + strand, within cpxA at 4177.087 kb on - strand, within cpxA at 4177.116 kb on - strand, within cpxA at 4177.116 kb on - strand, within cpxA at 4177.225 kb on + strand, within cpxA at 4177.470 kb on + strand at 4177.471 kb on - strand at 4177.471 kb on - strand at 4177.487 kb on + strand at 4177.488 kb on - strand at 4177.555 kb on + strand, within trmL at 4177.556 kb on - strand, within trmL at 4177.556 kb on - strand, within trmL at 4177.556 kb on - strand, within trmL at 4177.573 kb on + strand, within trmL at 4177.577 kb on - strand, within trmL at 4177.577 kb on - strand, within trmL at 4177.597 kb on + strand, within trmL at 4177.598 kb on - strand, within trmL at 4177.598 kb on - strand, within trmL at 4177.598 kb on - strand, within trmL at 4177.599 kb on + strand, within trmL at 4177.600 kb on - strand, within trmL at 4177.600 kb on - strand, within trmL at 4177.628 kb on - strand, within trmL at 4177.655 kb on + strand, within trmL at 4177.692 kb on - strand, within trmL at 4177.692 kb on - strand, within trmL at 4177.874 kb on - strand, within trmL at 4177.874 kb on - strand, within trmL at 4177.928 kb on + strand, within trmL at 4177.928 kb on + strand, within trmL at 4177.928 kb on + strand, within trmL at 4177.929 kb on - strand, within trmL at 4177.929 kb on - strand, within trmL at 4177.952 kb on + strand at 4177.969 kb on + strand at 4178.820 kb on - strand at 4178.820 kb on - strand at 4178.844 kb on - strand at 4178.844 kb on - strand at 4178.911 kb on - strand at 4178.911 kb on - strand at 4178.947 kb on - strand at 4178.947 kb on - strand at 4178.966 kb on + strand at 4178.967 kb on - strand, within gpsA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1) remove 4,176,507 - cpxA LU632_RS21860 0.31 -0.0 4,176,515 + cpxA LU632_RS21860 0.31 +0.3 4,176,553 + cpxA LU632_RS21860 0.34 -0.2 4,176,585 + cpxA LU632_RS21860 0.36 -0.9 4,176,604 - cpxA LU632_RS21860 0.38 -1.9 4,176,604 - cpxA LU632_RS21860 0.38 +1.5 4,176,604 - cpxA LU632_RS21860 0.38 -3.3 4,176,607 + cpxA LU632_RS21860 0.38 -1.7 4,176,834 + cpxA LU632_RS21860 0.54 +1.4 4,176,907 - cpxA LU632_RS21860 0.60 +1.0 4,176,907 - cpxA LU632_RS21860 0.60 +0.5 4,176,907 - cpxA LU632_RS21860 0.60 +0.5 4,176,915 + cpxA LU632_RS21860 0.60 +0.6 4,176,915 + cpxA LU632_RS21860 0.60 +2.1 4,176,916 - cpxA LU632_RS21860 0.60 -1.8 4,176,982 + cpxA LU632_RS21860 0.65 +0.5 4,176,982 + cpxA LU632_RS21860 0.65 +1.3 4,176,983 - cpxA LU632_RS21860 0.65 +3.1 4,176,983 - cpxA LU632_RS21860 0.65 +1.0 4,176,983 - cpxA LU632_RS21860 0.65 +1.0 4,177,084 + cpxA LU632_RS21860 0.72 +2.2 4,177,085 - cpxA LU632_RS21860 0.73 -0.8 4,177,085 - cpxA LU632_RS21860 0.73 +0.1 4,177,086 + cpxA LU632_RS21860 0.73 +0.1 4,177,086 + cpxA LU632_RS21860 0.73 +0.8 4,177,087 - cpxA LU632_RS21860 0.73 +0.5 4,177,116 - cpxA LU632_RS21860 0.75 -3.1 4,177,116 - cpxA LU632_RS21860 0.75 +0.1 4,177,225 + cpxA LU632_RS21860 0.83 +1.3 4,177,470 + +5.3 4,177,471 - +0.5 4,177,471 - -1.5 4,177,487 + -1.7 4,177,488 - +0.7 4,177,555 + trmL LU632_RS21865 0.10 -2.2 4,177,556 - trmL LU632_RS21865 0.11 -0.1 4,177,556 - trmL LU632_RS21865 0.11 -2.5 4,177,556 - trmL LU632_RS21865 0.11 -0.7 4,177,573 + trmL LU632_RS21865 0.14 -1.0 4,177,577 - trmL LU632_RS21865 0.15 -0.6 4,177,577 - trmL LU632_RS21865 0.15 +2.8 4,177,597 + trmL LU632_RS21865 0.19 -0.9 4,177,598 - trmL LU632_RS21865 0.19 -0.2 4,177,598 - trmL LU632_RS21865 0.19 -0.3 4,177,598 - trmL LU632_RS21865 0.19 -2.3 4,177,599 + trmL LU632_RS21865 0.20 -1.2 4,177,600 - trmL LU632_RS21865 0.20 -0.8 4,177,600 - trmL LU632_RS21865 0.20 +2.3 4,177,628 - trmL LU632_RS21865 0.26 +0.4 4,177,655 + trmL LU632_RS21865 0.31 -0.5 4,177,692 - trmL LU632_RS21865 0.39 +0.1 4,177,692 - trmL LU632_RS21865 0.39 +1.4 4,177,874 - trmL LU632_RS21865 0.77 -0.5 4,177,874 - trmL LU632_RS21865 0.77 +1.1 4,177,928 + trmL LU632_RS21865 0.89 -1.5 4,177,928 + trmL LU632_RS21865 0.89 +0.9 4,177,928 + trmL LU632_RS21865 0.89 -1.7 4,177,929 - trmL LU632_RS21865 0.89 -0.9 4,177,929 - trmL LU632_RS21865 0.89 +1.1 4,177,952 + +1.1 4,177,969 + +0.1 4,178,820 - +0.9 4,178,820 - -0.4 4,178,844 - -0.9 4,178,844 - +0.3 4,178,911 - -1.7 4,178,911 - -1.4 4,178,947 - -1.7 4,178,947 - +0.8 4,178,966 + +1.8 4,178,967 - gpsA LU632_RS21875 0.10 -3.2
Or see this region's nucleotide sequence