Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20145

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
3,836,346	+	cueO	LU632_RS20140	0.52	-0.9
3,836,347	-	cueO	LU632_RS20140	0.52	+2.3
3,836,413	+	cueO	LU632_RS20140	0.56	+0.4
3,836,413	+	cueO	LU632_RS20140	0.56	+1.1
3,836,414	-	cueO	LU632_RS20140	0.56	+1.4
3,836,574	+	cueO	LU632_RS20140	0.66	-2.9
3,836,824	+	cueO	LU632_RS20140	0.81	-0.5
3,836,825	-	cueO	LU632_RS20140	0.81	-1.9
3,836,916	+	cueO	LU632_RS20140	0.87	+2.1
3,836,916	+	cueO	LU632_RS20140	0.87	+0.1
3,836,917	-	cueO	LU632_RS20140	0.87	+0.2
3,836,918	+	cueO	LU632_RS20140	0.87	+2.3
3,836,919	-	cueO	LU632_RS20140	0.87	-1.9
3,836,929	-	cueO	LU632_RS20140	0.88	-0.1
3,836,929	-	cueO	LU632_RS20140	0.88	+1.1
3,836,929	-	cueO	LU632_RS20140	0.88	+2.2
3,836,929	-	cueO	LU632_RS20140	0.88	-0.5
3,837,007	+				+0.7
3,837,221	+				-1.5
3,837,221	+				+0.2
3,837,293	+				-1.3
3,837,312	-				-0.1
3,837,430	-		LU632_RS20145	0.34	-1.3
3,837,524	+		LU632_RS20145	0.61	+1.6
3,837,525	-		LU632_RS20145	0.61	+1.6
3,837,529	-		LU632_RS20145	0.62	+1.4
3,837,529	-		LU632_RS20145	0.62	+3.0
3,837,537	+		LU632_RS20145	0.65	+0.1
3,837,567	+		LU632_RS20145	0.73	-0.5
3,837,567	+		LU632_RS20145	0.73	+1.1
3,837,567	+		LU632_RS20145	0.73	-0.5
3,837,567	+		LU632_RS20145	0.73	+1.3
3,837,568	-		LU632_RS20145	0.74	-1.3
3,837,568	-		LU632_RS20145	0.74	+0.3
3,837,568	-		LU632_RS20145	0.74	+0.8
3,837,658	-				-1.5
3,837,715	+				-1.1
3,837,715	+				-0.2
3,837,716	-				-2.8
3,837,719	+				-1.3
3,837,719	+				+2.9
3,837,720	-				-0.6
3,837,790	+				-2.8
3,837,839	+				-1.5
3,837,845	-				+1.8
3,837,934	-	speE	LU632_RS20150	0.19	-1.8
3,837,955	+	speE	LU632_RS20150	0.22	-0.3
3,838,038	+	speE	LU632_RS20150	0.31	-1.9
3,838,038	+	speE	LU632_RS20150	0.31	-0.9
3,838,038	+	speE	LU632_RS20150	0.31	+0.9
3,838,038	+	speE	LU632_RS20150	0.31	+0.8
3,838,038	+	speE	LU632_RS20150	0.31	+0.6
3,838,038	+	speE	LU632_RS20150	0.31	+1.5
3,838,038	+	speE	LU632_RS20150	0.31	-2.1
3,838,038	+	speE	LU632_RS20150	0.31	-0.8
3,838,039	-	speE	LU632_RS20150	0.31	-1.5
3,838,039	-	speE	LU632_RS20150	0.31	+0.2
3,838,039	-	speE	LU632_RS20150	0.31	+0.6
3,838,039	-	speE	LU632_RS20150	0.31	+1.6
3,838,127	-	speE	LU632_RS20150	0.42	-3.4
3,838,219	-	speE	LU632_RS20150	0.52	-0.3
3,838,403	-	speE	LU632_RS20150	0.74	-1.9
3,838,444	+	speE	LU632_RS20150	0.79	+1.1
3,838,444	+	speE	LU632_RS20150	0.79	-1.5
3,838,445	-	speE	LU632_RS20150	0.79	+0.2
3,838,445	-	speE	LU632_RS20150	0.79	-0.1
3,838,502	+	speE	LU632_RS20150	0.85	-0.5
3,838,503	-	speE	LU632_RS20150	0.86	+1.6
3,838,507	-	speE	LU632_RS20150	0.86	-0.3
3,838,556	-				-1.8
3,838,558	+				-0.4
3,838,558	+				-0.6
3,838,559	-				-0.3
3,838,559	-				-1.3
3,838,559	-				-0.5
3,838,608	-				-3.5