Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20100

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
3,828,216	+	pcnB	LU632_RS20090	0.83	+2.1
3,828,958	+				-1.3
3,828,958	+				+0.7
3,828,958	+				-2.1
3,828,959	-				-3.2
3,828,974	+				-0.2
3,829,063	+				-1.6
3,829,072	-	panB	LU632_RS20100	0.10	+1.1
3,829,189	+	panB	LU632_RS20100	0.25	-0.7
3,829,189	+	panB	LU632_RS20100	0.25	+1.4
3,829,259	-	panB	LU632_RS20100	0.34	+1.3
3,829,300	-	panB	LU632_RS20100	0.39	+0.8
3,829,317	+	panB	LU632_RS20100	0.41	+1.1
3,829,318	-	panB	LU632_RS20100	0.41	+2.2
3,829,536	+	panB	LU632_RS20100	0.69	+3.4
3,829,574	+	panB	LU632_RS20100	0.73	+1.3
3,829,575	-	panB	LU632_RS20100	0.73	+0.1
3,829,575	-	panB	LU632_RS20100	0.73	-1.6
3,829,575	-	panB	LU632_RS20100	0.73	+1.1
3,829,579	-	panB	LU632_RS20100	0.74	+4.1
3,829,729	+				+0.5
3,829,729	+				-0.9
3,829,730	-				+1.0
3,829,781	-				+0.2
3,829,781	-				+3.6
3,829,869	+				-0.5
3,829,912	-	panC	LU632_RS20105	0.13	+2.1
3,829,912	-	panC	LU632_RS20105	0.13	+0.1
3,829,957	-	panC	LU632_RS20105	0.18	+0.6
3,830,126	+	panC	LU632_RS20105	0.38	-1.1
3,830,257	+	panC	LU632_RS20105	0.53	+0.8
3,830,302	+	panC	LU632_RS20105	0.59	-0.1
3,830,375	-	panC	LU632_RS20105	0.67	+0.5
3,830,472	+	panC	LU632_RS20105	0.78	+0.1
3,830,629	-				-1.3